BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0003.p (205 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLJ8.1 B1DLJ8_9BACL NUDIX hydrolase 290 6e-77 B3KGV6.1 B3KGV6_9BACI NUDIX hydrolase 264 4e-69 A7Z1X3.1 A7Z1X3_BACA2 YjhB 262 1e-68 A6CK65.1 A6CK65_9BACI Mutator MutT protein 252 2e-65 C2N7Q4.1 C2N7Q4_BACCE Mutator MutT protein 248 2e-64 >B1DLJ8.1 B1DLJ8_9BACL NUDIX hydrolase Length = 194 Score = 290 bits (742), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 133/194 (68%), Positives = 160/194 (82%) Query: 12 IQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAGEEGYSTPKVDV 71 +QAIAQTGL YA DVYDIERY+ALR++S++ILA YT S E+I LAFA + GY+TPK D+ Sbjct: 1 MQAIAQTGLTYATDVYDIERYEALRQMSIEILAEYTSVSHEQIALAFASDNGYTTPKTDI 60 Query: 72 RGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQAEALRLLAVLD 131 R V+F + KILLV+EK+DG W++PGGW+DIG SP+E+AVKE EE+GF A+RLLAVLD Sbjct: 61 RAVVFRDNKILLVQEKIDGGWSMPGGWSDIGYSPKEIAVKETQEEAGFDTSAIRLLAVLD 120 Query: 132 KKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSEERNTREQLRIM 191 KKFH+HPP PYHVYKMFILC I GG AA GVET+ V FF DELPELS ERNT EQ+++M Sbjct: 121 KKFHNHPPSPYHVYKMFILCEIIGGEAAAGVETSDVGFFGIDELPELSIERNTVEQVKLM 180 Query: 192 FEYLRNPEKPVILD 205 FEYL NP K VI+D Sbjct: 181 FEYLHNPSKEVIID 194 >B3KGV6.1 B3KGV6_9BACI NUDIX hydrolase Length = 205 Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 134/205 (65%), Positives = 157/205 (76%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 M KWL WAKE+QAI+Q GL Y +DVYD ER++ LRELS+ I+ YT +EKIR FA Sbjct: 1 MTIKWLAWAKEMQAISQAGLEYTRDVYDKERFEQLRELSIQIMQEYTEAGEEKIRTLFAS 60 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E GY TPKVDVRGVIF + K+LLV+EK DG WALPGGWADIGLSP EV VKE+ EE+G+ Sbjct: 61 ETGYQTPKVDVRGVIFQDGKLLLVKEKADGAWALPGGWADIGLSPAEVVVKEVKEEAGYD 120 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 A RLLAVLDKKFH+HPP +HVYKMFI C ITGGAA G ET+ V FF +DELP LSE Sbjct: 121 VRAGRLLAVLDKKFHNHPPSAFHVYKMFIQCDITGGAAGVGTETSAVGFFPQDELPPLSE 180 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 ERNT+EQL+ +FE+ +P P LD Sbjct: 181 ERNTKEQLKRIFEFENDPHLPTWLD 205 >A7Z1X3.1 A7Z1X3_BACA2 YjhB Length = 205 Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 120/205 (58%), Positives = 152/205 (74%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 ME KWL WAK++Q+ AQ GLAY+KD+YDIER++ +R++SVDI+A +T K I+ FAG Sbjct: 1 MEPKWLDWAKQLQSAAQAGLAYSKDIYDIERFEEIRKISVDIMAHHTGTDKRIIKDVFAG 60 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 + GY TPKVD+R +F ++ IL+VREK DG WALPGGWADIG+SP E AVKE+ EESG Sbjct: 61 DTGYPTPKVDIRAAVFKDQSILMVREKSDGRWALPGGWADIGISPGETAVKEVKEESGID 120 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 + ++LLAV+DKK H HPP HVYK+FI C I GG EG ET+ FFAE ELP LSE Sbjct: 121 VKPVKLLAVMDKKCHSHPPSAAHVYKVFIKCEIIGGRLREGTETSAAGFFAETELPPLSE 180 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 RNT Q+ MF YL++P++PV D Sbjct: 181 ARNTESQIEKMFAYLKHPDEPVYFD 205 >A6CK65.1 A6CK65_9BACI Mutator MutT protein Length = 213 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 114/205 (55%), Positives = 157/205 (76%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 M+ KWL WA++IQ+I+Q+GLA++KDVYDIERY+ LR+LS +I+A YT KE ++ FA Sbjct: 9 MKHKWLEWAQKIQSISQSGLAFSKDVYDIERYEELRDLSAEIMAEYTDVEKETVKGLFAL 68 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E+GY TPK DVRGV+F + KILLV+EK + W+LPGG+ D+GLSP E +KEI EESG++ Sbjct: 69 EKGYQTPKADVRGVVFEDNKILLVKEKNNNKWSLPGGFCDVGLSPAENVIKEIKEESGYE 128 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 + +LLA+LD H HPP+P+H YK+FI C + GG G+ET+ + FF E++LPELS Sbjct: 129 VKYKKLLALLDYYKHPHPPQPFHYYKIFIQCELIGGNPEAGLETSEIGFFDENQLPELSV 188 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 +RNT Q+R++FE+LRNPEK + D Sbjct: 189 DRNTESQIRLLFEFLRNPEKETLCD 213 >C2N7Q4.1 C2N7Q4_BACCE Mutator MutT protein Length = 205 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 146/205 (71%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 M+ KWL WAK I +++Q GL ++KD+YDIERYQ L ++S +I+A YT + KI F+ Sbjct: 1 MQHKWLEWAKRIHSLSQAGLTFSKDIYDIERYQELHKISNEIMAEYTNLNLAKIEDLFSN 60 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E GY TPK+DVRG++F IL+VREK D WALPGG+ ++GLSP E AVKEI EESG+ Sbjct: 61 ESGYPTPKIDVRGIVFQNNGILMVREKSDDKWALPGGFCEVGLSPSENAVKEIQEESGYS 120 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 ++LLAVLD +H HPP+PYH YK+FI C I GG A G+ET V FF +D LP+LS Sbjct: 121 VIPIKLLAVLDMNYHPHPPQPYHYYKIFIQCEICGGQATTGIETKDVRFFQKDNLPQLST 180 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 RNT QL+++FE+ NP+K I + Sbjct: 181 NRNTESQLKMLFEFNENPKKEAIFN 205 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,306,318,067 Number of extensions: 52668750 Number of successful extensions: 137862 Number of sequences better than 1.0e-05: 520 Number of HSP's gapped: 137987 Number of HSP's successfully gapped: 520 Length of query: 205 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 76 Effective length of database: 1,845,385,268 Effective search space: 140249280368 Effective search space used: 140249280368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)