BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0002.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W4M8.1 C2W4M8_BACCE Putative uncharacterized protein 374 e-102 C3B006.1 C3B006_BACMY Putative uncharacterized protein 373 e-101 C3BGI5.1 C3BGI5_9BACI Putative uncharacterized protein 373 e-101 C3AI33.1 C3AI33_BACMY Putative uncharacterized protein 371 e-101 Q6HMT1.1 Q6HMT1_BACHK Methyltransferase EC=2.1.1.- 358 3e-97 >C2W4M8.1 C2W4M8_BACCE Putative uncharacterized protein Length = 324 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/292 (59%), Positives = 218/292 (74%) Query: 1 MELRCLFGREIPAAIFGSRTQVEVSRSPFIKERIDVMYSGDRLEDIYKQTEQVEVEGQTF 60 ME+R LFG E I S+ ++E SRSPFIKERI+VMY GD L DI +Q EQ+++ G TF Sbjct: 33 MEMRSLFGVESHVNILKSKVKIEPSRSPFIKERIEVMYEGDELADILEQVEQIDLAGATF 92 Query: 61 KVIFVKTNDLSPEEKIEYDXXXXXXXXXXXXXXXXXDVNHPERVYGIVTLGGRWYFGVYH 120 KVIFVK NDL+ KIEY DV+HPERV+GIV LGGRWYFG Y Sbjct: 93 KVIFVKINDLNESNKIEYGQRRVIEREIGMVIEGEADVHHPERVFGIVPLGGRWYFGEYI 152 Query: 121 KNKATWFRQMNKPRSYSIALSTRVARAAVNMAVPHPEGVRAIDPCCGIGTVMVEALSMGI 180 +++A W++ + KPRSYS +LSTRVAR+ N+AVP+P+GV+AIDPCCGIGTV+VEALSMGI Sbjct: 153 ESEAVWYKHVKKPRSYSTSLSTRVARSVANIAVPNPDGVKAIDPCCGIGTVLVEALSMGI 212 Query: 181 DIVGRDINPQIAAGARTNIAHFGFNSVVTLGDIADIQEHYDVAIVDMPYNLYSRITPEEQ 240 DIVGRDINP + G+R NIAHFGF VT+G IAD+ +YDVAI+DMPYNL++ TPE+Q Sbjct: 213 DIVGRDINPLVVIGSRENIAHFGFEGDVTVGPIADVTTNYDVAIIDMPYNLFTHATPEDQ 272 Query: 241 LAILVHTRRIADRAVIVAIEAVDEMIAEAGFAIIDRCVAKKGAFSRHLMLCE 292 +IL + RR A + ++V IE +D MI EAGF I DRC+AKKG FSR +++CE Sbjct: 273 FSILKNARRFAKKVIVVTIETMDHMIKEAGFEITDRCIAKKGTFSREILVCE 324 >C3B006.1 C3B006_BACMY Putative uncharacterized protein Length = 339 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/292 (59%), Positives = 216/292 (73%) Query: 1 MELRCLFGREIPAAIFGSRTQVEVSRSPFIKERIDVMYSGDRLEDIYKQTEQVEVEGQTF 60 ME+R LFG E I S ++E SRSPF+KERI+VMY GD L +I +Q EQ+++ G TF Sbjct: 48 MEMRSLFGVESHVNILKSNVKIEPSRSPFMKERIEVMYEGDDLANILEQVEQIDLAGATF 107 Query: 61 KVIFVKTNDLSPEEKIEYDXXXXXXXXXXXXXXXXXDVNHPERVYGIVTLGGRWYFGVYH 120 KVIFVK NDL+ KIEY DV+HPERV+GIV LGGRWYFG Y Sbjct: 108 KVIFVKINDLNESNKIEYGQRRVIEREIGMQIEGEADVHHPERVFGIVPLGGRWYFGEYI 167 Query: 121 KNKATWFRQMNKPRSYSIALSTRVARAAVNMAVPHPEGVRAIDPCCGIGTVMVEALSMGI 180 +++A W+ + KPRSYS +LSTRVARA N+AVP+P+GV+AIDPCCGIGTV+VEALSMGI Sbjct: 168 ESEAVWYHHVKKPRSYSTSLSTRVARAVANIAVPNPDGVKAIDPCCGIGTVLVEALSMGI 227 Query: 181 DIVGRDINPQIAAGARTNIAHFGFNSVVTLGDIADIQEHYDVAIVDMPYNLYSRITPEEQ 240 DIVGRDINP + G+R NIAHFGF VT+G IAD+ +YDVAI+DMPYNL++ TPE+Q Sbjct: 228 DIVGRDINPLVVIGSRENIAHFGFEGDVTVGPIADVTTNYDVAIIDMPYNLFTHATPEDQ 287 Query: 241 LAILVHTRRIADRAVIVAIEAVDEMIAEAGFAIIDRCVAKKGAFSRHLMLCE 292 +IL H RR A + ++V IE +D MI EAGF I DRC+AKKG FSR +++CE Sbjct: 288 FSILTHARRFAKKVIVVTIETMDHMIKEAGFEITDRCIAKKGTFSREILVCE 339 >C3BGI5.1 C3BGI5_9BACI Putative uncharacterized protein Length = 339 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/292 (59%), Positives = 216/292 (73%) Query: 1 MELRCLFGREIPAAIFGSRTQVEVSRSPFIKERIDVMYSGDRLEDIYKQTEQVEVEGQTF 60 ME+R LFG E I S ++E SRSPF+KERI+VMY GD L +I +Q EQ+++ G TF Sbjct: 48 MEMRSLFGVESHVNILKSNVKIEPSRSPFMKERIEVMYEGDDLANILEQVEQIDLAGATF 107 Query: 61 KVIFVKTNDLSPEEKIEYDXXXXXXXXXXXXXXXXXDVNHPERVYGIVTLGGRWYFGVYH 120 KVIFVK NDL+ KIEY DV+HPERV+GIV LGGRWYFG Y Sbjct: 108 KVIFVKINDLNEANKIEYGQRRVIEREIGMQIEGEADVHHPERVFGIVPLGGRWYFGEYI 167 Query: 121 KNKATWFRQMNKPRSYSIALSTRVARAAVNMAVPHPEGVRAIDPCCGIGTVMVEALSMGI 180 +++A W+ + KPRSYS +LSTRVARA N+AVP+P+GV+AIDPCCGIGTV+VEALSMGI Sbjct: 168 ESEAVWYHHVKKPRSYSTSLSTRVARAVANIAVPNPDGVKAIDPCCGIGTVLVEALSMGI 227 Query: 181 DIVGRDINPQIAAGARTNIAHFGFNSVVTLGDIADIQEHYDVAIVDMPYNLYSRITPEEQ 240 DIVGRDINP + G+R NIAHFGF VT+G IAD+ +YDVAI+DMPYNL++ TPE+Q Sbjct: 228 DIVGRDINPLVVIGSRENIAHFGFEGDVTVGPIADVTTNYDVAIIDMPYNLFTHATPEDQ 287 Query: 241 LAILVHTRRIADRAVIVAIEAVDEMIAEAGFAIIDRCVAKKGAFSRHLMLCE 292 +IL H RR A + ++V IE +D MI EAGF I DRC+AKKG FSR +++CE Sbjct: 288 FSILTHARRFAKKVIVVTIETMDHMIKEAGFEITDRCIAKKGTFSREILVCE 339 >C3AI33.1 C3AI33_BACMY Putative uncharacterized protein Length = 339 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/292 (59%), Positives = 215/292 (73%) Query: 1 MELRCLFGREIPAAIFGSRTQVEVSRSPFIKERIDVMYSGDRLEDIYKQTEQVEVEGQTF 60 ME+R LFG E I S ++E SRSPF+KERI+VMY GD L +I +Q EQ+++ G TF Sbjct: 48 MEMRSLFGVESHVNILKSNVKIEPSRSPFMKERIEVMYEGDDLANILEQVEQIDLAGATF 107 Query: 61 KVIFVKTNDLSPEEKIEYDXXXXXXXXXXXXXXXXXDVNHPERVYGIVTLGGRWYFGVYH 120 KVIFVK NDL+ KIEY DV+HPERV+GIV LGGRWYFG Y Sbjct: 108 KVIFVKINDLNESNKIEYGQRRVIEREIGMQIEGEADVHHPERVFGIVPLGGRWYFGEYI 167 Query: 121 KNKATWFRQMNKPRSYSIALSTRVARAAVNMAVPHPEGVRAIDPCCGIGTVMVEALSMGI 180 +++A W+ + KPRSYS +LSTRVARA N+AVP+P+GV+ IDPCCGIGTV+VEALSMGI Sbjct: 168 ESEAVWYHHVKKPRSYSTSLSTRVARAVANIAVPNPDGVKVIDPCCGIGTVLVEALSMGI 227 Query: 181 DIVGRDINPQIAAGARTNIAHFGFNSVVTLGDIADIQEHYDVAIVDMPYNLYSRITPEEQ 240 DIVGRDINP + G+R NIAHFGF VT+G IAD+ +YDVAI+DMPYNL++ TPE+Q Sbjct: 228 DIVGRDINPLVVIGSRENIAHFGFEGDVTVGPIADVTTNYDVAIIDMPYNLFTHATPEDQ 287 Query: 241 LAILVHTRRIADRAVIVAIEAVDEMIAEAGFAIIDRCVAKKGAFSRHLMLCE 292 +IL H RR A + ++V IE +D MI EAGF I DRC+AKKG FSR +++CE Sbjct: 288 FSILTHARRFAKKVIVVTIETMDHMIKEAGFEITDRCIAKKGTFSREILVCE 339 >Q6HMT1.1 Q6HMT1_BACHK Methyltransferase EC=2.1.1.- Length = 317 Score = 358 bits (919), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 169/292 (57%), Positives = 212/292 (72%) Query: 1 MELRCLFGREIPAAIFGSRTQVEVSRSPFIKERIDVMYSGDRLEDIYKQTEQVEVEGQTF 60 +E+R FG E I S +++ SRSPF+KER++VMY GD LE I KQ EQ+++ G TF Sbjct: 26 LEMRSFFGMESQVNILKSDVKIDPSRSPFMKERVEVMYEGDDLESILKQVEQIDLAGATF 85 Query: 61 KVIFVKTNDLSPEEKIEYDXXXXXXXXXXXXXXXXXDVNHPERVYGIVTLGGRWYFGVYH 120 KVIFVK NDL E KIEY DV +PERV+GIV LGGRWYFG Y Sbjct: 86 KVIFVKINDLVGENKIEYGERRLIERDLGMHIEGEADVRNPERVFGIVPLGGRWYFGHYV 145 Query: 121 KNKATWFRQMNKPRSYSIALSTRVARAAVNMAVPHPEGVRAIDPCCGIGTVMVEALSMGI 180 +++ W+ + KPRSYS +LSTRVAR+ N+AVP+PEGV+AIDPCCGIGTV+VEALSMGI Sbjct: 146 ESEPVWYHHIKKPRSYSTSLSTRVARSVANIAVPNPEGVKAIDPCCGIGTVVVEALSMGI 205 Query: 181 DIVGRDINPQIAAGARTNIAHFGFNSVVTLGDIADIQEHYDVAIVDMPYNLYSRITPEEQ 240 +IVGRDI+P +A GAR NIAHFGF +T G I +I E+YDVAI+DMPY+L++ TPE Q Sbjct: 206 NIVGRDISPLVAIGARENIAHFGFEGTITKGPIEEITENYDVAIIDMPYDLFTHATPENQ 265 Query: 241 LAILVHTRRIADRAVIVAIEAVDEMIAEAGFAIIDRCVAKKGAFSRHLMLCE 292 L+IL RRIA + V+V +E +D+MI EAGF I DRC KKG FSR +++CE Sbjct: 266 LSILSSARRIAKKVVVVTMETMDDMIHEAGFEITDRCTTKKGTFSRQILVCE 317 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,525,094,582 Number of extensions: 56071991 Number of successful extensions: 156501 Number of sequences better than 1.0e-05: 119 Number of HSP's gapped: 156444 Number of HSP's successfully gapped: 119 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)