BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0001.p (451 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDB2.1 B1DDB2_9BACL Peptidase M20 650 0.0 B3KJS0.1 B3KJS0_9BACI Peptidase M20 649 0.0 Q9K657.1 Q9K657_BACHD BH3875 protein 531 e-149 B7DNP7.1 B7DNP7_9BACL Peptidase M20 509 e-142 C1PQX7.1 C1PQX7_ALIAC Acetylornithine deacetylase/succinyldiamin... 499 e-139 >B1DDB2.1 B1DDB2_9BACL Peptidase M20 Length = 451 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/451 (68%), Positives = 364/451 (80%) Query: 1 MSYETYFQTEREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYP 60 MSYE+YF RE QL ELK++L IPSISALS HK+D++ AA W+ L+ AGLEN++++ Sbjct: 1 MSYESYFSERREQQLEELKEFLRIPSISALSEHKQDMIKAAEWVAGKLEAAGLENVKIHQ 60 Query: 61 TAGHPVIYADYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDK 120 TAGHP++YAD+LHAPGKPT+LVYGHYDVQPVDPLNLW TPPFEP R+GKLYARGATDDK Sbjct: 61 TAGHPIVYADHLHAPGKPTVLVYGHYDVQPVDPLNLWETPPFEPTERNGKLYARGATDDK 120 Query: 121 GQVFMHIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDT 180 GQVF+HIKA+EA+LKQE LPVN+K CIEGEEEI S L +FL ++ LA DAVL+SDT Sbjct: 121 GQVFLHIKAVEALLKQEQQLPVNVKFCIEGEEEISSPSLLTFLNEKQELLATDAVLISDT 180 Query: 181 SLLERGRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGR 240 SL+E+G+PAI TGLRGLCSLE+++N + TDLHSG+YGGGVPN D GR Sbjct: 181 SLIEKGKPAISTGLRGLCSLELTINASNTDLHSGTYGGGVPNALHAMVELLASLHDKHGR 240 Query: 241 VAVEGFYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLEL 300 + VEGFY+GVPEL+ + EEF KQ +EE+++ +FVER GARPTLEL Sbjct: 241 ITVEGFYEGVPELTAAMHEEFEKQKFNEEQLKKTLGLGTLYGEEGYTFVERTGARPTLEL 300 Query: 301 NGVYGGFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQM 360 NGV+GGFQGEG+KTVIPKEAHAKITCRLVG QDPQ ILD + AHL AN+Q G + VK Sbjct: 301 NGVWGGFQGEGTKTVIPKEAHAKITCRLVGQQDPQRILDAIIAHLHANVQQGVTLSVKPG 360 Query: 361 EKARAFNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGL 420 EKARAF++DP+ P+LQTAADAY VYGTRALFTKDGGSIPI+E+FSR L APV++MGFGL Sbjct: 361 EKARAFDMDPTIPLLQTAADAYEAVYGTRALFTKDGGSIPIVETFSRQLSAPVIMMGFGL 420 Query: 421 DDENLHAPDEHFNLENFDKGLLTIVEFLKTV 451 DENLHAP+EHFNLENFDKGLLTIVEFLK V Sbjct: 421 PDENLHAPNEHFNLENFDKGLLTIVEFLKRV 451 >B3KJS0.1 B3KJS0_9BACI Peptidase M20 Length = 453 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/451 (69%), Positives = 361/451 (80%) Query: 1 MSYETYFQTEREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYP 60 + Y+ YF RE L ELK+WLSIPSISALS HK DV AA WL L AGLE++E++ Sbjct: 3 VDYKAYFAEHRETHLNELKEWLSIPSISALSEHKGDVAKAAEWLAGKLTEAGLEHVEVHQ 62 Query: 61 TAGHPVIYADYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDK 120 TAGHP+I ADYLHA GKPT+LVYGHYDVQPVDPL+LW TPPFEP +R+GKLYARGATDDK Sbjct: 63 TAGHPIITADYLHAEGKPTVLVYGHYDVQPVDPLHLWETPPFEPAVRNGKLYARGATDDK 122 Query: 121 GQVFMHIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDT 180 GQ+F+H+KA+EAILKQE LPVNIK CIEGEEE+ S +LP +L+ +KDKLAADA+++SDT Sbjct: 123 GQLFLHVKAVEAILKQEKELPVNIKFCIEGEEEVSSPNLPLYLDNNKDKLAADAIVISDT 182 Query: 181 SLLERGRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGR 240 SLL G+PAI TGLRGLCSLE+S+ TA TDLHSG+YGGGVPN D++GR Sbjct: 183 SLLAPGKPAISTGLRGLCSLELSLETANTDLHSGTYGGGVPNALHAMVSLLSSLHDEQGR 242 Query: 241 VAVEGFYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLEL 300 VAVEGFYDGV ELSP +REEFAKQ DE+K++ SFVERVGARPTLEL Sbjct: 243 VAVEGFYDGVLELSPEMREEFAKQQFDEDKLKRDLGLDSLYGEEGFSFVERVGARPTLEL 302 Query: 301 NGVYGGFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQM 360 NGVYGGFQGEGSKTVIPKEAHAKITCRLV DQDPQ +LD +E HL A+ GAK+ + Sbjct: 303 NGVYGGFQGEGSKTVIPKEAHAKITCRLVADQDPQAVLDAIEKHLHAHTPVGAKITFQPK 362 Query: 361 EKARAFNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGL 420 EKA AFNIDPS+P+LQ AADA+ VYG+RALFTKDGGSIPI+E S L AP V+MGFGL Sbjct: 363 EKAFAFNIDPSHPMLQKAADAFENVYGSRALFTKDGGSIPIVEKLSSTLNAPAVMMGFGL 422 Query: 421 DDENLHAPDEHFNLENFDKGLLTIVEFLKTV 451 DENLHAP+EHFNLENFDKGLLTIVE+LK V Sbjct: 423 PDENLHAPNEHFNLENFDKGLLTIVEYLKLV 453 >Q9K657.1 Q9K657_BACHD BH3875 protein Length = 458 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 251/443 (56%), Positives = 323/443 (72%) Query: 5 TYFQTEREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAGH 64 TY + +RE L ELKQ L+IPS+SALS HKEDV AA W +DTL++AGLE++E+ T GH Sbjct: 6 TYLEQKREEHLDELKQLLAIPSVSALSEHKEDVRKAAAWFVDTLQKAGLEHVEMIETKGH 65 Query: 65 PVIYADYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDKGQVF 124 P++YAD+LHA GKPT+L+YGHYDVQPVDP+NLW TPPFEP IR+GK++ARGATDDKGQ F Sbjct: 66 PLVYADWLHAKGKPTVLIYGHYDVQPVDPINLWETPPFEPSIREGKIFARGATDDKGQTF 125 Query: 125 MHIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLLE 184 MHIKA+EA+LK EGTLPVN+KL IEGEEEIGS +L F+E ++KL AD +++SDT +L Sbjct: 126 MHIKALEALLKTEGTLPVNVKLIIEGEEEIGSPNLDPFVEQEQNKLQADVLVISDTPMLG 185 Query: 185 RGRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAVE 244 +G+PAICTGLRGLCSL++ V DLHSG YGG V N ++KG+V VE Sbjct: 186 KGKPAICTGLRGLCSLQIDVKGTKGDLHSGLYGGAVQNSVHALVQLLDSMRNEKGQVMVE 245 Query: 245 GFYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGVY 304 GFYD V + SP RE FA+ +++++ S +ER RPTLE+NG+Y Sbjct: 246 GFYDDVVDASPEERESFARLDHHDDEMKDELGVTELFGEEGFSTLERTWIRPTLEINGIY 305 Query: 305 GGFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQMEKAR 364 GGFQGEG KTVIP EAHAKITCRLV DQDP I ++E H++ + G KV + + R Sbjct: 306 GGFQGEGVKTVIPSEAHAKITCRLVPDQDPHQIASLIEKHIEGHTPLGVKVTTTRFDTGR 365 Query: 365 AFNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDEN 424 F +P +Q AA +Y +YG A+FT+ GGSIP++E+F R+++ P+VLMGFGL EN Sbjct: 366 PFAASIDHPAIQAAARSYEAIYGEPAVFTRMGGSIPVVETFHRLMKLPIVLMGFGLPSEN 425 Query: 425 LHAPDEHFNLENFDKGLLTIVEF 447 HAP+EHF+LENFDKGL+T+ + Sbjct: 426 FHAPNEHFHLENFDKGLVTLCHY 448 >B7DNP7.1 B7DNP7_9BACL Peptidase M20 Length = 462 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/444 (54%), Positives = 318/444 (71%) Query: 4 ETYFQTEREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAG 63 E+Y +++R+A L ELK+ LSIPS+SALS H+ DV AA W+ + LK AG E++EL T G Sbjct: 8 ESYLESQRDALLGELKELLSIPSVSALSEHRGDVRRAAEWIAERLKSAGFEHVELMETGG 67 Query: 64 HPVIYADYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDKGQV 123 HP++YAD+LHA GKPT+LVYGHYDVQPVDP+ LW +PPF P +R KLYARGA+DDKG Sbjct: 68 HPLVYADWLHADGKPTVLVYGHYDVQPVDPVELWESPPFTPTVRGNKLYARGASDDKGPT 127 Query: 124 FMHIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLL 183 F+HI + A+LK +G LPVN+K CIEGEEE+GS HL SFLE ++DK AD +L+SDT+++ Sbjct: 128 FLHIAVLSAMLKVQGRLPVNVKFCIEGEEEVGSAHLHSFLERTRDKFQADLILISDTTMV 187 Query: 184 ERGRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAV 243 +PA+ GLRGL + ++ V TA +DLHSG YGG VPN G VAV Sbjct: 188 GPNQPAVVYGLRGLAAAQIDVRTAASDLHSGLYGGAVPNAARAVAEIVASFHRPDGTVAV 247 Query: 244 EGFYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGV 303 GFYD V L+ REEFAK G +E++++ + +ER+ ARPTLE+NG+ Sbjct: 248 AGFYDRVRPLTEAEREEFAKLGHEEDELKRSLQLTDLWGEPGYTALERMCARPTLEVNGI 307 Query: 304 YGGFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQMEKA 363 +GGFQGEGSKTVIP EAHAKITCRLV DQDPQ ILD+VE H++A+ GA+V + + Sbjct: 308 WGGFQGEGSKTVIPCEAHAKITCRLVPDQDPQEILDLVERHVQAHAPKGARVTFVRQDGG 367 Query: 364 RAFNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDE 423 + + +P LQ AA AY YG +A+FT+ GGSIP++E+FS +L PVV+MGF L+DE Sbjct: 368 KPYVAPYDHPALQLAASAYEHAYGVKAVFTRMGGSIPVVETFSTLLHIPVVMMGFSLNDE 427 Query: 424 NLHAPDEHFNLENFDKGLLTIVEF 447 N HAP+EHF+L+NFDKGL T+ + Sbjct: 428 NFHAPNEHFSLDNFDKGLRTLAYY 451 >C1PQX7.1 C1PQX7_ALIAC Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase Length = 462 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/444 (55%), Positives = 317/444 (71%) Query: 4 ETYFQTEREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAG 63 E+Y + ER+A L ELK+ LSIPS+SALS H+ DV AA W+ + LK AG E++EL T G Sbjct: 8 ESYLERERDALLEELKELLSIPSVSALSEHRGDVRRAAEWIAERLKSAGFEHVELMETGG 67 Query: 64 HPVIYADYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDKGQV 123 HP++YAD+LHA G+PT+LVYGHYDVQPVDP+ LW +PPF P +R KLYARGA+DDKG Sbjct: 68 HPLVYADWLHADGRPTVLVYGHYDVQPVDPVELWESPPFTPTVRGNKLYARGASDDKGPT 127 Query: 124 FMHIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLL 183 F+HI + A+LK +G LPVN+K CIEGEEE+GS HL SFLE ++DK AD VL+SDT+L+ Sbjct: 128 FLHIAVLSAMLKVQGRLPVNVKFCIEGEEEVGSAHLHSFLERTRDKFRADLVLISDTTLV 187 Query: 184 ERGRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAV 243 +PA+ GLRGL + ++ V TA +DLHSG YGG VPN G VAV Sbjct: 188 GPNQPAVVYGLRGLAAAQIDVRTAASDLHSGLYGGAVPNAARSVAEIVASFHRPDGTVAV 247 Query: 244 EGFYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGV 303 EGFYD V L+ REEFAK G DE +++ + +ER+ ARPTLE+NG+ Sbjct: 248 EGFYDRVRPLTEAEREEFAKLGHDEGELKRSLQLADLWGEPGYTALERMCARPTLEVNGI 307 Query: 304 YGGFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQMEKA 363 +GGFQGEG+KTVIP EAHAKITCRLV DQDPQ ILD+VE H++A+ GA+V + + Sbjct: 308 WGGFQGEGTKTVIPCEAHAKITCRLVPDQDPQEILDLVERHVQAHAPKGARVTFVRQDGG 367 Query: 364 RAFNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDE 423 + + +P LQ AA AY YG +A+FT+ GGSIP++E+FS +L P+V+MGF L+DE Sbjct: 368 KPYVAPYDHPALQLAASAYEHAYGQKAVFTRMGGSIPVVETFSTLLHIPIVMMGFSLNDE 427 Query: 424 NLHAPDEHFNLENFDKGLLTIVEF 447 N HAP+EHF+L+NFDKGL T+ + Sbjct: 428 NFHAPNEHFSLDNFDKGLRTLTYY 451 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,677,550,830 Number of extensions: 112102609 Number of successful extensions: 236490 Number of sequences better than 1.0e-05: 1837 Number of HSP's gapped: 234150 Number of HSP's successfully gapped: 1847 Length of query: 451 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 312 Effective length of database: 1,751,175,118 Effective search space: 546366636816 Effective search space used: 546366636816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)