BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0478.0002.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q7ND01.1 Q7ND01_GLOVI Quinone oxidoreductase 269 2e-70 B1DMD8.1 B1DMD8_9BACL Alcohol dehydrogenase zinc-binding domain ... 244 9e-63 C1R4N4.1 C1R4N4_9ACTO Zn-dependent oxidoreductase, NADPH:quinone... 235 4e-60 C4E5D2.1 C4E5D2_STRRS Zn-dependent oxidoreductase, NADPH:quinone... 230 9e-59 Q0SGL2.1 Q0SGL2_RHOSR Probable NADH:quinone reductase EC=1.6.5.5 204 9e-51 >Q7ND01.1 Q7ND01_GLOVI Quinone oxidoreductase Length = 329 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/300 (47%), Positives = 192/300 (64%), Gaps = 2/300 (0%) Query: 2 LTIDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMM 61 +TIDV YAGV Y E++ RG F++V P P PG+EV+G++RA+GEGV +GQPVA++ Sbjct: 30 VTIDVEYAGVNYLELMFRRG-FVAV-PLPFVPGIEVAGHIRAVGEGVTDLQVGQPVAALT 87 Query: 62 LKDHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGDNVL 121 + G+A + +T LD L +DLA AAA + TAYL L+ + GD VL Sbjct: 88 IVGQGGYAEVVRSPAALTFALDTLERPVDLAAAAAFPCTMITAYLVLSAAARFTPGDAVL 147 Query: 122 IHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSEFTEQVLKAAG 181 +HAA GGLGS LGQVA+RLGAG+VLGTVG+ +K A + GYD +F+R + E V+ A G Sbjct: 148 VHAAAGGLGSALGQVARRLGAGQVLGTVGSPDKIAYAQAHGYDRVFLREHYREAVIAATG 207 Query: 182 EKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQFAGFTI 241 G+ V+DPVGGN+R +S+++L+ LG+L++LGNA E T S N LW S+K GF + Sbjct: 208 GAGVQIVVDPVGGNLRSESLEVLSVLGQLIVLGNAGNGEDTFQSTNGLWLSSKGVQGFNL 267 Query: 242 GQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGKLILKV 301 P AAR L +AR E+H I VLP+E A EA +EQ+ T GKLILK+ Sbjct: 268 LAVCLQAPEKIKDAARRVLEWIARDELHVPISGVLPLEAADEAHRRIEQRATTGKLILKI 327 >B1DMD8.1 B1DMD8_9BACL Alcohol dehydrogenase zinc-binding domain protein Length = 330 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 134/300 (44%), Positives = 201/300 (67%), Gaps = 1/300 (0%) Query: 2 LTIDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMM 61 +TIDVA+AGV Y EVL +G + +P P PG+EVSG +R IGE V G GQPVA++ Sbjct: 30 VTIDVAFAGVNYAEVLFRKGG-VPKLPLPFVPGIEVSGTIREIGEKVMGLRPGQPVAALT 88 Query: 62 LKDHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGDNVL 121 + G+A + V E PLD+ G ++ + +AAA N+TTAY+ +++V +M G+ VL Sbjct: 89 IVGGGGYAEVVKVPAEFVFPLDEAGGQVSMESAAAFPSNVTTAYMIISKVSRMQHGETVL 148 Query: 122 IHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSEFTEQVLKAAG 181 +HAA GG+GS +GQVAK LGAG V+GTVG+ +K A + GYDE+++R +F EQV + Sbjct: 149 VHAAAGGVGSAIGQVAKALGAGLVIGTVGSPDKVDYAKALGYDEVYLREDFEEQVREMTV 208 Query: 182 EKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQFAGFTI 241 +G+D V+DPVGG +R+ S+ LL PLG+L+ +GNAS E S N+LWF++K +GF + Sbjct: 209 GQGVDVVVDPVGGLMREASLRLLKPLGRLIAMGNASDAEDVKQSLNELWFTSKTVSGFNL 268 Query: 242 GQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGKLILKV 301 + P + ++AR+ALA++A E+ ++ +LP+ KA EA +E + + GK++LKV Sbjct: 269 QLLSMTAPRLVAESARKALALVASGEVKVDVTGLLPLHKAEEAHRQIEDRKSTGKMVLKV 328 >C1R4N4.1 C1R4N4_9ACTO Zn-dependent oxidoreductase, NADPH:quinone reductase Length = 332 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 137/305 (44%), Positives = 196/305 (64%), Gaps = 15/305 (4%) Query: 2 LTIDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMM 61 ++IDVAYAG + EVL RG + +P P PG+EVSG VRAIGEGV G +GQPVA++ Sbjct: 37 VSIDVAYAGANFAEVLYRRG--VVDVPLPFVPGIEVSGRVRAIGEGVSGLTVGQPVAALT 94 Query: 62 LKDHNGFATMANVRPEMTIPLDQL-----GAEMDLATAAAAIVNLTTAYLTLTEVYKMNK 116 + D G+A +A ++ PL + G+ +DLATAAA N TTA+L L ++ ++ Sbjct: 95 IVDSGGYAEVAVTAADLVAPLAESTDLDPGSALDLATAAALPSNSTTAFLVLDQIARLAP 154 Query: 117 GDNVLIHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSEFTEQV 176 G++VL+HAA GG+GS LGQVA+ LGAG+V+GTVG+ K + A FGYDE+ +R + Sbjct: 155 GESVLVHAAAGGVGSQLGQVARLLGAGRVVGTVGSAAKVETARGFGYDEVILRDD----- 209 Query: 177 LKAAGEKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQF 236 L +AG+ D V+D VGG RQ S+D L PLG+LV++GNASG E +S N+LWFSNK Sbjct: 210 LASAGQ--FDVVVDMVGGPARQGSLDRLAPLGRLVVMGNASGAEDVGISANELWFSNKTV 267 Query: 237 AGFTIGQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGK 296 +GF + Y+ P G+A R A+ + + ++ E +P+ + E +E +T GK Sbjct: 268 SGFNLAAYSAVHPDRAGQALRRAVRAASEGTLRVQV-EAVPLSQVVETHRRIESGSTTGK 326 Query: 297 LILKV 301 L+L+V Sbjct: 327 LVLEV 331 >C4E5D2.1 C4E5D2_STRRS Zn-dependent oxidoreductase, NADPH:quinone reductase Length = 324 Score = 230 bits (587), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 189/300 (63%), Gaps = 12/300 (4%) Query: 2 LTIDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMM 61 +++DVAYAG + E+L +G + +P P PG+E +G +RA+G GVEG +GQPVA++ Sbjct: 34 VSVDVAYAGANFAEILYRQG--VVDVPLPFVPGIEAAGRIRALGPGVEGLRVGQPVAALT 91 Query: 62 LKDHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGDNVL 121 + G+A + ++ PLD G ++ AAA N TTA+L L V ++ G++VL Sbjct: 92 IVGSGGYAEVVTTAADLVAPLDGTG--LEPGVAAALPSNSTTAFLVLDRVARIEPGESVL 149 Query: 122 IHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSEFTEQVLKAAG 181 +HAA GG+GS LGQ A+ LGAG+V+GTVG+ K + A SFGYDE+ +R E E AG Sbjct: 150 VHAAAGGVGSQLGQAARSLGAGRVVGTVGSPAKIETARSFGYDEVVLREEVAE-----AG 204 Query: 182 EKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQFAGFTI 241 D V+D VGG R+ S+DLL P+G+LV++GNASG E + N+LWF+NK +GF + Sbjct: 205 R--FDIVVDMVGGPARRSSLDLLAPMGRLVVMGNASGAEDVGIPANELWFTNKTVSGFNL 262 Query: 242 GQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGKLILKV 301 +A P TG+A A++ A E+ ++ E L +E+A EA +E T GKL+L+V Sbjct: 263 AAFAAAFPAETGRALHRAVSATASGELRVQV-ESLRLEQAAEAHRRIEAGRTTGKLVLEV 321 >Q0SGL2.1 Q0SGL2_RHOSR Probable NADH:quinone reductase EC=1.6.5.5 Length = 327 Score = 204 bits (518), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 173/300 (57%), Gaps = 4/300 (1%) Query: 2 LTIDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMM 61 ++IDV++A VG +VL+ RGEF P I PGLEV+G VR +G GV +GQPV ++ Sbjct: 30 VSIDVSHAAVGLADVLMRRGEFGGTPP--IVPGLEVAGTVREVGAGVHHLRVGQPVVTLS 87 Query: 62 LKDHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGDNVL 121 G+A ++ +TIPLD + +D A A A + N TTA L+L V + G VL Sbjct: 88 RPTAGGYAEVSVADAAITIPLDSVDPRLDAAEAVAVVPNTTTALLSLELVGNVGPGSQVL 147 Query: 122 IHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSEFTEQVLKAAG 181 IH A G L QVA+RLGA +VLGTV + + A +GYD L + S L AG Sbjct: 148 IHGAAGALSGITAQVARRLGAAQVLGTVRSSRRAAEAERYGYD-LVMSSNGFRIALSDAG 206 Query: 182 EKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQFAGFTI 241 +D V+DPVGG +R +S+++L PLG+L+ +GNASGE+ + N+LW +N+ GF + Sbjct: 207 IDSVDIVVDPVGGRLRAESLEVLAPLGRLLAVGNASGEDDVRVGANELWLANRAVLGFNV 266 Query: 242 GQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGKLILKV 301 G P AAR A+A +A + H LP+ +A EA LLE + G+++L V Sbjct: 267 GGLLMQDPTAAEAAARRAIAWVAAGTVSMP-HATLPLAQAAEAHRLLESGDCEGRIVLTV 325 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,731,435,714 Number of extensions: 73946024 Number of successful extensions: 239979 Number of sequences better than 1.0e-05: 5482 Number of HSP's gapped: 233454 Number of HSP's successfully gapped: 5550 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)