BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0071.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6L8.1 B3K6L8_9BACI Response regulator receiver 435 e-120 C2ZNF0.1 C2ZNF0_BACCE Two component transcriptional regulator, w... 291 3e-77 C2Z6R1.1 C2Z6R1_BACCE Two component transcriptional regulator, w... 291 3e-77 C2Y9J1.1 C2Y9J1_BACCE Two component transcriptional regulator, w... 289 1e-76 C2XAM4.1 C2XAM4_BACCE Two component transcriptional regulator, w... 289 1e-76 >B3K6L8.1 B3K6L8_9BACI Response regulator receiver Length = 232 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/232 (90%), Positives = 219/232 (94%) Query: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLEAADGNEALHKLTTVPDIDIALLDVMVPGID 60 MSKVLILEDEESIRSFIVINLKRNGFEVLE +GNEAL L T PDIDIALLDVMVPGID Sbjct: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGID 60 Query: 61 GFEVCRRIRETNERLGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120 GFEVCRRIRETNER+GIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIAR+QSLLRR Sbjct: 61 GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRR 120 Query: 121 VNVHREQSAKVSFQSGPFTLDLISKQFKRSGEAIELTPTEFSLVQYFLEMENTPLSRDSL 180 VNV R +AKVSFQSGPFTLDLISKQFK++G+ +ELTPTEFSLVQ+FLE ENTPLSRD L Sbjct: 121 VNVQRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVL 180 Query: 181 LDHVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPEYLQTVWGHGYKWKGQGQ 232 LDHVWGKEYMGDPKIVDVNIRRLRQKIE NPSEPEYLQTVWGHGYKWKGQGQ Sbjct: 181 LDHVWGKEYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGYKWKGQGQ 232 >C2ZNF0.1 C2ZNF0_BACCE Two component transcriptional regulator, winged helix Length = 232 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 132/228 (57%), Positives = 181/228 (79%), Gaps = 3/228 (1%) Query: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLEAADGNEALHKLTTVPDIDIALLDVMVPGID 60 MS +L+LEDE IRSFIV+NLKR GF VLEA+ G EAL L+ +++ALLDVM+PGID Sbjct: 4 MSAILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSE-QTVNVALLDVMLPGID 62 Query: 61 GFEVCRRIRETNERLGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120 GF+VC+ IRE N+++GII LTA+VQ +DKV L +GADD+++KPFSP ELIARIQSLLRR Sbjct: 63 GFQVCKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRR 122 Query: 121 VNVHREQSAKVSFQSGPFTLDLISKQFKRSGEAIELTPTEFSLVQYFLEMENTPLSRDSL 180 + VH E++ ++ SGPF+L++I ++ + G+ ++LTPTE+ ++QY + + P+SRD + Sbjct: 123 IEVHEEKTNTIT--SGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEI 180 Query: 181 LDHVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPEYLQTVWGHGYKWK 228 L+ +WG Y+G+ K+VDVN+RRLRQKIE NPSEPE++ TVWG GY WK Sbjct: 181 LNMIWGTNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWK 228 >C2Z6R1.1 C2Z6R1_BACCE Two component transcriptional regulator, winged helix Length = 232 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 132/228 (57%), Positives = 181/228 (79%), Gaps = 3/228 (1%) Query: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLEAADGNEALHKLTTVPDIDIALLDVMVPGID 60 MS +L+LEDE IRSFIV+NLKR GF VLEA+ G EAL L+ +++ALLDVM+PGID Sbjct: 4 MSAILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSE-QTVNVALLDVMLPGID 62 Query: 61 GFEVCRRIRETNERLGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120 GF+VC+ IRE N+++GII LTA+VQ +DKV L +GADD+++KPFSP ELIARIQSLLRR Sbjct: 63 GFQVCKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRR 122 Query: 121 VNVHREQSAKVSFQSGPFTLDLISKQFKRSGEAIELTPTEFSLVQYFLEMENTPLSRDSL 180 + VH E++ ++ SGPF+L++I ++ + G+ ++LTPTE+ ++QY + + P+SRD + Sbjct: 123 IEVHEEKTNTIT--SGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEI 180 Query: 181 LDHVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPEYLQTVWGHGYKWK 228 L+ +WG Y+G+ K+VDVN+RRLRQKIE NPSEPE++ TVWG GY WK Sbjct: 181 LNMIWGTNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWK 228 >C2Y9J1.1 C2Y9J1_BACCE Two component transcriptional regulator, winged helix Length = 232 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 133/228 (58%), Positives = 180/228 (78%), Gaps = 3/228 (1%) Query: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLEAADGNEALHKLTTVPDIDIALLDVMVPGID 60 MSK+L+LEDE +IRSFIV+NLKR GF V+EA G EAL L+ +DIALLDVM+PGID Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSE-QTVDIALLDVMLPGID 62 Query: 61 GFEVCRRIRETNERLGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120 G EVC+ IR+ NE++GII LTA+VQ++DKV L +GADD+++KPFSP L ARIQSLLRR Sbjct: 63 GLEVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 122 Query: 121 VNVHREQSAKVSFQSGPFTLDLISKQFKRSGEAIELTPTEFSLVQYFLEMENTPLSRDSL 180 + VH E++ V+ SGPF+L++I ++ + G+ ++LTPTE+ ++QY + + P+SRD + Sbjct: 123 IEVHEEKTNIVT--SGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEI 180 Query: 181 LDHVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPEYLQTVWGHGYKWK 228 L+ +WG Y+G+ K+VDVN+RRLRQKIE NPSEPE++ TVWG GY WK Sbjct: 181 LNMIWGTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWK 228 >C2XAM4.1 C2XAM4_BACCE Two component transcriptional regulator, winged helix Length = 232 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 133/228 (58%), Positives = 180/228 (78%), Gaps = 3/228 (1%) Query: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLEAADGNEALHKLTTVPDIDIALLDVMVPGID 60 MSK+L+LEDE +IRSFIV+NLKR GF V+EA G EAL L+ +DIALLDVM+PGID Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSE-QTVDIALLDVMLPGID 62 Query: 61 GFEVCRRIRETNERLGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120 G EVC+ IR+ NE++GII LTA+VQ++DKV L +GADD+++KPFSP L ARIQSLLRR Sbjct: 63 GLEVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 122 Query: 121 VNVHREQSAKVSFQSGPFTLDLISKQFKRSGEAIELTPTEFSLVQYFLEMENTPLSRDSL 180 + VH E++ V+ SGPF+L++I ++ + G+ ++LTPTE+ ++QY + + P+SRD + Sbjct: 123 IEVHEEKTNIVT--SGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEI 180 Query: 181 LDHVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPEYLQTVWGHGYKWK 228 L+ +WG Y+G+ K+VDVN+RRLRQKIE NPSEPE++ TVWG GY WK Sbjct: 181 LNMIWGTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWK 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,382,845,775 Number of extensions: 54831299 Number of successful extensions: 243202 Number of sequences better than 1.0e-05: 28625 Number of HSP's gapped: 203094 Number of HSP's successfully gapped: 28779 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)