BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0070.p (440 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6L9.1 B3K6L9_9BACI Putative uncharacterized protein 344 1e-92 C0ZJT6.1 C0ZJT6_BREBN Putative uncharacterized protein 196 5e-48 A4J7U6.1 A4J7U6_DESRM Putative uncharacterized protein 167 3e-39 C2VSI6.1 C2VSI6_BACCE Putative uncharacterized protein 153 4e-35 C3F0G7.1 C3F0G7_BACTU Putative uncharacterized protein 153 4e-35 >B3K6L9.1 B3K6L9_9BACI Putative uncharacterized protein Length = 444 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 188/426 (44%), Positives = 274/426 (64%), Gaps = 24/426 (5%) Query: 34 GCTFISDPVSKMRAPQLSADKASL----KTAINTLKPAGSTLIRPANN-DDSAIFTEDLD 88 GCTFI DPVS M+ P L DKA+L ++A+ +K +IRP ++ D S+I DLD Sbjct: 20 GCTFIQDPVSLMKRPDLPTDKATLNGAIQSALQKIKLDNGAIIRPRSDVDSSSIRIHDLD 79 Query: 89 KDGIMETLVFYLTKNETVQIHGMILEKHDKAWVKKLVFDGNGTGLDSVNIQDVTGDGKLD 148 DG+ME +VFY T +E V+IHGMI+++ WVK L FDG GT L+S + D T DGK+D Sbjct: 80 NDGVMEAVVFYQTPDEEVKIHGMIMQQQGDTWVKSLDFDGEGTVLESFDFVDFTNDGKVD 139 Query: 149 IIAGYSRGEE---KGMVVYSYSNGVLEEMLTQPYTKYLLDDLNEDGIQDITVVNFKRNEF 205 I+AG+SRGEE + VYS+S LE++ PYT + + D+N D ++DITVV ++ E Sbjct: 140 IVAGFSRGEENLQNLLAVYSFSGDSLEKIPALPYTHFNIGDMNGDKVKDITVVYLQQKEL 199 Query: 206 ATIATYQY---SDGFKVLDELDDLDPYFNNYYNIVSGKVAEHKEGIILDAAIDSHSAYST 262 + I+TYQY D F L++L DL P +YYN+V+GKVA++KEGIILDA++ S+S+YS Sbjct: 200 SYISTYQYDKFEDAFVELNKL-DLGPNIESYYNVVAGKVAKNKEGIILDASVVSNSSYSK 258 Query: 263 MVVMENNKLRVVVPGDARTFKERKIVSEDIDGDGILEIGLLEPPKGWE-YFDPQTIPYFN 321 +++ME+NK V+ + T+KE + SED++ DGILE G+L P GWE IP+F Sbjct: 259 LIIMEDNKFIDVLQDELLTYKELPVESEDVNDDGILEFGVLTRPSGWEDRLILDEIPFFT 318 Query: 322 SYYKWDGK-------NGLTFSAQLYQDPSDRFTLNILPKWYEKVTVDTKSVQDKYLRFIM 374 +Y++WDG+ GL F Q Y D ++RF L+ P Y K+T+ +S ++ YL F+M Sbjct: 319 TYFQWDGEVRESNEVEGLQFVLQRYYDMNNRFYLDFPPDMYNKITITPESNKNAYLNFVM 378 Query: 375 LDTGETVAEVSFFTPAEWDREKNEGWEMLGSDLDKIIGYRGE---LEQNTSGGDSNKITS 431 DTGE+VAE+ FF+ A+W + +++ WE+L + +++I YR S+ + Sbjct: 379 TDTGESVAEIKFFSTAQWGKAESD-WEILVKEKNRVIAYRSHGDLKLSKKDKKPSSNNVA 437 Query: 432 PIERKG 437 PIERKG Sbjct: 438 PIERKG 443 >C0ZJT6.1 C0ZJT6_BREBN Putative uncharacterized protein Length = 454 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 179/335 (53%), Gaps = 8/335 (2%) Query: 34 GCTFISDPVSKMRAPQLSADKASLKTAINTLKPAGSTLIRPAN-NDDSAIFTEDLDKDGI 92 GC P MRAP D+ S+ A+ PAGS L P + + SA+ +DL+ DG+ Sbjct: 18 GCGLTDTPNELMRAPSADGDQKSINQAVMQFLPAGSQLSVPLHPAEASAVSLQDLNGDGV 77 Query: 93 METLVFYLTKNETVQIHGMILEKHDKAWVKKLVFDGNGTGLDSVNIQDVTGDGKLDIIAG 152 E + FY T+ +I ++L + W K F G G+ LD V+ QD+TGD +++ G Sbjct: 78 AEVVAFYKTEKTDYEIGVLVLTQKQGNWEKLSSFTGVGSELDYVSFQDLTGDKIPEMLIG 137 Query: 153 YSRGEE--KGMVVYSYSNGVLEEMLTQPYTKYLLDDLNEDGIQDITVVNFKRNEFATIA- 209 GE+ K + VYS +N + +E++ QPYT + DL D +D+ +V +N F + A Sbjct: 138 MGGGEDLNKELSVYSLANNMTQELMKQPYTIMAVGDLTGDNQEDLALVVLDKNNFTSKAE 197 Query: 210 TYQYSDGFKVLDELDDLDPYFNNYYNIVSGKVAEHKEGIILDAAIDSHSAYSTMVVMENN 269 Y ++G LD Y N YY + GK + + G+ +DA + +HSA + +++ +N Sbjct: 198 LYGAANGTIAKKTELALDGYVNGYYQAIIGKASPTRNGLFIDAGLGAHSASTELLLWDNG 257 Query: 270 KLR---VVVPGDA-RTFKERKIVSEDIDGDGILEIGLLEPPKGWEYFDPQTIPYFNSYYK 325 +L + G+ TFK + SEDI+GDGI+EIG P G E IP+ +SY++ Sbjct: 258 QLSNPLAKIEGEMDLTFKPYSLESEDINGDGIIEIGTKIQPAGTEDLAMAEIPWVSSYFQ 317 Query: 326 WDGKNGLTFSAQLYQDPSDRFTLNILPKWYEKVTV 360 WDGK GL YQ+ S F L I KW EK T+ Sbjct: 318 WDGKTGLKHIEDHYQNYSQGFDLKIPAKWGEKYTI 352 >A4J7U6.1 A4J7U6_DESRM Putative uncharacterized protein Length = 450 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/338 (31%), Positives = 169/338 (50%), Gaps = 8/338 (2%) Query: 34 GCTFISDPVSKMRAPQLSADKASLKTAINTLKPAGSTLIRPANNDDSAIFTE-DLDKDGI 92 GC F+ P+ ++ P + +A +K A P GS P + F + DLD DG Sbjct: 20 GCNFMQSPMELLKQPSMDVSQAEMKRAAEQFLPTGSQFTIPLKPSGTGSFRQADLDGDGS 79 Query: 93 METLVFYLTKNETVQIHGMILEKHDKAWVKKLVFDGNGTGLDSVNIQDVTGDGKLDIIAG 152 E L FY ++ +IL+K D W + G G +D ++QDVTGD K +++ G Sbjct: 80 KELLAFYKNLQAGYEMGALILKKEDGKWQLQDHIKGLGQSIDYGDLQDVTGDKKPELLVG 139 Query: 153 YSR--GEEKGMVVYSYSNGVLEEMLTQPYTKYLLDDLNEDGIQDITVVNFKRNEFATIAT 210 +S G EK + +YS+ + + + Y + DL+EDG ++ V+ E + Sbjct: 140 WSGADGYEKELEIYSFQDKKAKRIGQYTYNSFSTGDLDEDGKAELAVLFRNNKEIPSAEL 199 Query: 211 YQYSDGFKVLDELDDLDPYFNNY-YNIVSGKVAEHKEGIILDAAIDSHSAYSTMVVMENN 269 + Y L + L+ Y Y +V G+ ++ ++GI +D +HSA + +V +ENN Sbjct: 200 HLYQAVSGELKQTAKLE-YEGGYPAGVVIGQASKDRKGIFVDIGEGAHSAVTQLVFLENN 258 Query: 270 KLRVVVPGDARTFKERKIVSEDIDGDGILEIGLLEPPKGWEYFDPQTIPYFNSYYKWDGK 329 LR V +RTFK + SED+D DG++EIG++ P G E IP+ N +YKWDGK Sbjct: 259 TLRNVF-SQSRTFKPYSLPSEDVDKDGVMEIGIMYEPPGTEQMAMAEIPWVNRWYKWDGK 317 Query: 330 NGLTFSAQLYQDPSDRFTLNILPKWYEKVTVDTKSVQD 367 +GL + Y + + I W K TV K ++D Sbjct: 318 DGLLPVLEEYSNYIFGYRFIIPQNWIGKFTV--KEIED 353 >C2VSI6.1 C2VSI6_BACCE Putative uncharacterized protein Length = 415 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 10/364 (2%) Query: 34 GCTFISDPVSKMRAPQLSADKASLKTAINTLKPAGSTLIRP-ANNDDSAIFTEDLDKDGI 92 GC P + M AP LK I+ P L+ P +N D I++ D +D Sbjct: 16 GCKMSEAPTNLMEAPANEKWINELKEQIDKDLPVNYRLLTPMSNKDKQMIWSMDFKQDNK 75 Query: 93 METLVFYLTKNETVQIHGMILEKHDKAWVKKLVFDGNGTGLDSVNIQDVTGDGKLDIIAG 152 E ++FY N ++ + EK+ W K NG +D V + D TG+GK +++ G Sbjct: 76 KEAIIFYKLPNADHSVYLAVYEKNGNGWKTKSTHKFNGGDVDIVEVGDFTGNGKRELLIG 135 Query: 153 YSRGEE---KGMVVYSYSNGVLEEMLTQPYTKYLLDDLNEDGIQDITVVNFKRNEFATIA 209 S E M V+S N + E+ + YTK +DDLN++G++D+++V ++++E + Sbjct: 136 ISVDRESLKHVMYVFSEENEDMREIYNRNYTKLFIDDLNKNGLKDLSLVTYEKDEKLIV- 194 Query: 210 TYQYSDGFKVLDELDDLDPYFNNYYNIVSGKVAEHKEGIILDAAIDSHSAYSTMVVMENN 269 ++ + FK L E DP+ N+ I G++++ + I++DA + +HS + + + N Sbjct: 195 --EFIEQFKTLSEA-SFDPFINSIQRIQMGRISKSLKAIVIDAGVGAHSGITYVAKFDEN 251 Query: 270 KLRVV-VPGDARTFKERKIVSEDIDGDGILEIGLLEPPKGWEYFDPQTIPYFNSYYKWDG 328 V+ + G F E + S+D++ DGI+E PKGWE P F Y +W Sbjct: 252 HYEVLPIDGKEDLFNEYVVESKDVNEDGIIEFVRTVRPKGWEDKPHGDSPLFERYIQW-S 310 Query: 329 KNGLTFSAQLYQDPSDRFTLNILPKWYEKVTVDTKSVQDKYLRFIMLDTGETVAEVSFFT 388 ++G+ + Y D + + I + K+T+ + + +F+ T ET EV F Sbjct: 311 ESGIKPIEERYIDIEKGYYVKIPKELIGKITISDEQKESNSQKFLETSTNETWLEVHMFK 370 Query: 389 PAEW 392 EW Sbjct: 371 RKEW 374 >C3F0G7.1 C3F0G7_BACTU Putative uncharacterized protein Length = 425 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 10/364 (2%) Query: 34 GCTFISDPVSKMRAPQLSADKASLKTAINTLKPAGSTLIRP-ANNDDSAIFTEDLDKDGI 92 GC P + M AP LK I+ P L+ P +N D I++ D +D Sbjct: 26 GCKMSEAPTNLMEAPANEKWINELKEQIDKDLPVNYRLLTPMSNKDKQMIWSMDFKQDNK 85 Query: 93 METLVFYLTKNETVQIHGMILEKHDKAWVKKLVFDGNGTGLDSVNIQDVTGDGKLDIIAG 152 E ++FY N ++ + EK+ W K NG +D V + D TG+GK +++ G Sbjct: 86 KEAVIFYKLPNADHSVYLAVYEKNGNGWKTKSTHKFNGGDVDIVEVGDFTGNGKRELLIG 145 Query: 153 YSRGEE---KGMVVYSYSNGVLEEMLTQPYTKYLLDDLNEDGIQDITVVNFKRNEFATIA 209 S E M V+S N + E+ + YTK +DDLN++G++D+++V ++++E + Sbjct: 146 ISVDRESLKHVMYVFSEENEDMREIYNRNYTKLFIDDLNKNGLKDLSLVTYEKDEKLIV- 204 Query: 210 TYQYSDGFKVLDELDDLDPYFNNYYNIVSGKVAEHKEGIILDAAIDSHSAYSTMVVMENN 269 ++ + FK L E DP+ N+ I G++++ + I++DA + +HS + + + N Sbjct: 205 --EFIEQFKTLSEA-SFDPFINSIQRIQMGRISKSLKAIVIDAGVGAHSGITYVAKFDEN 261 Query: 270 KLRVV-VPGDARTFKERKIVSEDIDGDGILEIGLLEPPKGWEYFDPQTIPYFNSYYKWDG 328 V+ + G F E + S+D++ DGI+E PKGWE P F Y +W Sbjct: 262 HYEVLPIDGKEDLFNEYVVESKDVNEDGIIEFVRTVRPKGWEDKPHGDSPLFERYIQW-S 320 Query: 329 KNGLTFSAQLYQDPSDRFTLNILPKWYEKVTVDTKSVQDKYLRFIMLDTGETVAEVSFFT 388 ++G+ + Y D + + I + K+T+ + + +F+ T ET EV F Sbjct: 321 ESGIKPIEERYIDIEKGYYVKIPKELIGKITISDEQKESNSQKFLETSTNETWLEVHIFK 380 Query: 389 PAEW 392 EW Sbjct: 381 RKEW 384 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,753,943,238 Number of extensions: 126177608 Number of successful extensions: 224740 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 224402 Number of HSP's successfully gapped: 68 Length of query: 440 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 301 Effective length of database: 1,751,175,118 Effective search space: 527103710518 Effective search space used: 527103710518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)