BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0067.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6M3.1 B3K6M3_9BACI Regulatory protein ArsR 337 8e-91 B3KEU7.1 B3KEU7_9BACI Regulatory protein ArsR 154 7e-36 Q9K7Z5.1 Q9K7Z5_BACHD BH3212 protein 146 2e-33 C0Z6G9.1 C0Z6G9_BREBN Probable transcriptional regulator 120 2e-25 B3K3D0.1 B3K3D0_9BACI Regulatory protein ArsR 116 2e-24 >B3K6M3.1 B3K6M3_9BACI Regulatory protein ArsR Length = 305 Score = 337 bits (864), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 165/306 (53%), Positives = 218/306 (71%), Gaps = 3/306 (0%) Query: 1 VNYKLEIDVSPVYELLDSFMLYVTKKWNSNLDIGPDWIRDVDSRIAPQQISA-LRQAAEW 59 + YK+ IDVS VYELL SFM+Y T+KW NLDIG I ++D R+ PQ + A W Sbjct: 1 MKYKVSIDVSMVYELLGSFMIYATRKWTDNLDIGKQLITEMDERL-PQHVRVQFSGARSW 59 Query: 60 PFEDYDVLYAWAYSRGPASKVTQFLDELEACSLEECFERTAPFFESFTLEECARIKYSYT 119 P DYDVLYA RG ++ FL +E+ +EE P S T +E +RI+ +YT Sbjct: 60 PLADYDVLYALIMLRGEHLEIPDFLGWIESSPVEELHGLLQPHLPSLTRDETSRIRENYT 119 Query: 120 PLLRLWYDQYFRHTEQKMLTLMIEDASEKKMLESKMDIVALIEYASGGMVIEDIPELETI 179 PL++LWY+ YF E ++ L+ EDA EK+ML KMD LIEYAS G++++++P+ E + Sbjct: 120 PLMKLWYEHYFSEVEPELYHLLEEDAEEKRMLLPKMDDENLIEYASSGVILDNVPQ-ENV 178 Query: 180 VLLPTVHNRPINTYCFYKKLMLVQYPVDVPQDSEDEPPIVLLRLTKALSDPTRLRMLRFI 239 VL P H RPINTYCFY ++L+QYP+D+P++ EDEPP+VLLR+T+AL+DP RLR+LR+I Sbjct: 179 VLFPGTHFRPINTYCFYDNVLLLQYPIDIPEEDEDEPPVVLLRMTEALADPERLRLLRYI 238 Query: 240 AHEPKTMWEMQSELSQTREMLMHHLLILRVAGLLRVHLRGEGTERYSIRPDGASELQMFL 299 A EPK + EM SEL Q E LMHHL+ILR AGLLR HL+ E ER+S+RPDGA+ELQMFL Sbjct: 239 ADEPKAVSEMASELGQPYEQLMHHLMILRAAGLLRSHLKSENNERFSLRPDGAAELQMFL 298 Query: 300 ESYIRI 305 E+YIR+ Sbjct: 299 ETYIRL 304 >B3KEU7.1 B3KEU7_9BACI Regulatory protein ArsR Length = 323 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 161/311 (51%), Gaps = 18/311 (5%) Query: 1 VNYKLEIDVSPVYELLDSFMLYVTKKWNSNLDIGPDWIRDVDSRIAPQQISALRQAA--- 57 ++Y+LE+ SPV EL++S Y+ K W+ +D+GPDW ++V + ++ + L Q Sbjct: 2 LSYQLELSFSPVNELINSLHTYLCKSWHKRIDLGPDWTQNVHASLSSEFADQLEQTGIDL 61 Query: 58 EWPFEDYDVLYAWAYSRGPASKVTQFLDELEACSLEECFERTAPFFESFTLEECARIKYS 117 EW +L+ AY + V FL L+ +L E + +P+ ++F E+ ++ Sbjct: 62 EW-----KLLHLLAYVSPNKNSVEDFLSWLQKLTLGELYAVLSPYVQTFP-EDFGAVRNR 115 Query: 118 YTPLLRLWYDQYFRHTEQKMLTLMIEDASEK---KMLESKMDIVALIEYASGGMVIEDIP 174 +L W + YF+H + ++T + +A EK E+ AL + G E + Sbjct: 116 QHRMLSEWNEVYFKHIDPGIVTALRAEAEEKTGWGGFEAYEKAAAL----TNGFCFEPVN 171 Query: 175 ELETIVLLPTVHNRPINTYCFYKKLMLVQYPVDV--PQDSEDEPPIVLLRLTKALSDPTR 232 LE +VL+P H +P N + Y L L Y + + EDEP + L RL ++LS+ +R Sbjct: 172 GLEKLVLIPHYHFQPGNIFYSYGSLTLCHYASRIWPHSEEEDEPSLQLYRLLRSLSEKSR 231 Query: 233 LRMLRFIAHEPKTMWEMQSELSQTREMLMHHLLILRVAGLLRVHLRGEGTERYSIRPDGA 292 LR+L F+ EP+T E+ L ++ + H+ LR AGLL VH+ GE YS+R + Sbjct: 232 LRILHFLRSEPRTFIEVVRHLGISKGITHDHIFNLRCAGLLNVHVVGETVSTYSLRVERI 291 Query: 293 SELQMFLESYI 303 +++ L Y+ Sbjct: 292 QQIEQGLFDYL 302 >Q9K7Z5.1 Q9K7Z5_BACHD BH3212 protein Length = 298 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 7/302 (2%) Query: 3 YKLEIDVSPVYELLDSFMLYVTKKWNSNLDIGPDWIRDVDSRIAPQQISALRQAAEWPFE 62 YK+EID SP YEL+ S Y+ ++G W++ V+ I + L+ + E Sbjct: 2 YKIEIDYSPAYELITSLYTYLDSSNRQISELGTKWVKQVEKSINADFANELK---DQKLE 58 Query: 63 DYDVLYAWAYSRGPASKVTQFLDELEACSLEECFERTAPFFESFTLEECARIKYSYTPLL 122 L + +T FL LE E+ +E P+ + + ++ +I+ + LL Sbjct: 59 VLHRLSLLVWQCPHKETITGFLYWLEQLPSEKVYELLVPWVQQIS-KDMIQIQTYFVSLL 117 Query: 123 RLWYDQYFRHTEQKMLTLMIEDASEKKMLESKMDIVALIEYASGGMVIEDIPELETIVLL 182 R W +QYF H + +L ++ +DA +K +L S++D V L+E + GM I ++T++L+ Sbjct: 118 RRWNEQYFCHLSEDILEMLQKDALKKTVLASQIDPVDLVEQCTNGMHIM-AENVDTLLLV 176 Query: 183 PTVHNRPINTYCFYKKLMLVQYPVDVPQDSEDEPPIVLLRLTKALSDPTRLRMLRFIAHE 242 P H P + ++ L+ YPVD Q+ + EPP L R K+L+D RL++LR++ + Sbjct: 177 PQFHQSPFSVIDYFDGLITCLYPVD--QELKGEPPKKLERQMKSLADERRLKILRYLQEK 234 Query: 243 PKTMWEMQSELSQTREMLMHHLLILRVAGLLRVHLRGEGTERYSIRPDGASELQMFLESY 302 P+T E+Q + + +H+ +LR AG +R H + E+YS+R + +LQ L Y Sbjct: 235 PRTFSEIQQFTGLAKGNVHYHIKLLRTAGFIRAHHNSKRVEKYSLRDESLVQLQDVLFRY 294 Query: 303 IR 304 ++ Sbjct: 295 VK 296 >C0Z6G9.1 C0Z6G9_BREBN Probable transcriptional regulator Length = 306 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 11/304 (3%) Query: 3 YKLEIDVSPVYELLDSFMLYVTKKWNSNLDIGPDWIRDVDSRIAPQQISALRQAAEWPFE 62 Y + ++ SP YE + S Y+ +K + +G W+ + ++ P A E E Sbjct: 5 YSIRVEWSPAYECIISLYTYIYEKDRKHSLLGTAWLEETKQKL-PASF-----ADELADE 58 Query: 63 DYDVLYAWA--YSRGPASK-VTQFLDELEACSLEECFERTAPFFESFTLEECARIKYSYT 119 ++VL+ ++ P +K V +FL LE+ E +ER AP+ E+ L I+ Sbjct: 59 RWEVLHRLVLLVAQSPQTKSVEKFLGWLESIPPGEIYERLAPWVETIPLN-LGEIRDRSL 117 Query: 120 PLLRLWYDQYFRHTEQKMLTLMIEDASEKKMLESKMDIVALIEYASGGMVIEDIPELETI 179 LL W + YF + ++L + A E + + L+++ + G+ IE + +L + Sbjct: 118 SLLTRWNEHYFSKMDPRILESLQRSADELTARAKETPPIDLVDHVTNGIWIEPMADLREV 177 Query: 180 VLLPTVHNRPINTYCFYKKLMLVQYPVDVPQDSEDEPPIVLLRLTKALSDPTRLRMLRFI 239 VL+P H + FY+ L YPV ++ +P + LL +T+ L+D RL++LR + Sbjct: 178 VLIPQYHCAHSSVLDFYRGLATCMYPVKDAATTKPQPLLELLPITQCLADEKRLQILRCL 237 Query: 240 AHEPKTMWEMQSELSQTREMLMHHLLILRVAGLLRVHLRGEGT-ERYSIRPDGASELQMF 298 A + T+ E+Q ++S + + HH+ LR AGL+R H G T YS+R L + Sbjct: 238 AKKTCTLGELQKQVSLAKSTVHHHVTALRRAGLIRAHYTGSTTISYYSLREAFVERLPVL 297 Query: 299 LESY 302 L S+ Sbjct: 298 LRSF 301 >B3K3D0.1 B3K3D0_9BACI Regulatory protein ArsR Length = 307 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 7/301 (2%) Query: 5 LEIDVSPVYELLDSFMLYVTKKWNSNLDIGPDWIRDVDSRIAPQQISALRQAAEWPFEDY 64 + +D SPV+EL+ S Y K N D+G W +D+ + L + Y Sbjct: 6 IRVDYSPVHELVTSLFTYADNK-NQMHDLGNKWRKDIQKNLPASFTDKLEELDLCEIVAY 64 Query: 65 DVLYAWAYSRGPASKVTQFLDELEACSLEECFERTAPFFESFTLEECARIKYSYTPLLRL 124 L+ + +FL + +E AP+ E + ++ Sbjct: 65 --LHLVIVDSPKKDNIERFLAWFADLGEGQLYEILAPYLEDGFPMGLKTFRDQSLEIMTE 122 Query: 125 WYDQYFRHTEQKMLTLMIEDASEKKMLESKMDIVALIEYASGGMVIEDIPELETIVLLPT 184 W+ Y E + L+ A+ + L ++ + LI+ A+ G+V++ E I+L+PT Sbjct: 123 WHRVYTILPE--IHDLLGRSAARMEQLSRELSCIDLIDEATNGIVLDPEDEYSAILLIPT 180 Query: 185 VHNRPINTYC-FYKKLMLVQYPVDVPQDSEDEPPIVLLRLTKALSDPTRLRMLRFIAHEP 243 H +P+N + +++ Y VD Q ED P LLR+TK L+D RL +L +A P Sbjct: 181 YHIKPLNRMDEVGNQQLIISYAVDDEQQDEDTPTNQLLRMTKGLADEKRLVLLHILADGP 240 Query: 244 KTMWEMQSELSQTREMLMHHLLILRVAGLLRVHLRGEGTE-RYSIRPDGASELQMFLESY 302 T E+Q + ++ L +HL +L+ AGLLR+H + +YS RP+ ++L+ FLESY Sbjct: 241 VTFTELQQKTGLSKSNLHYHLSLLKTAGLLRMHFKMPNERYKYSARPESFTQLKSFLESY 300 Query: 303 I 303 + Sbjct: 301 V 301 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,795,847,840 Number of extensions: 71644110 Number of successful extensions: 181382 Number of sequences better than 1.0e-05: 87 Number of HSP's gapped: 181387 Number of HSP's successfully gapped: 87 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)