BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0065.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q63GA3.1 Q63GA3_BACCZ Probable thiol-disulfide oxidoreductase (D... 147 5e-34 C3FY38.1 C3FY38_BACTU Disulfide bond formation protein D 147 7e-34 C3BXE5.1 C3BXE5_BACTU Disulfide bond formation protein D 147 1e-33 C2QN36.1 C2QN36_BACCE Disulfide bond formation protein D 147 1e-33 C3HDH5.1 C3HDH5_BACTU Disulfide bond formation protein D 146 1e-33 >Q63GA3.1 Q63GA3_BACCZ Probable thiol-disulfide oxidoreductase (Disulfide bond formation protein D) (Disulfideoxidoreductase D) Length = 219 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 49 YEKQPHLGSENAKVKVIEFADFKCPACKKWTEAYLDTFIKDYVDTGKVQLYFMNFAFLDR 108 Y Q LG ++A VKV+EF DFKCPAC+ W L ++Y+D GKVQLYF+NF F+ + Sbjct: 45 YSTQQSLGKDDAPVKVVEFGDFKCPACRTWDVTVLPRLKEEYIDKGKVQLYFINFPFIGK 104 Query: 109 DSYLAASAGEAIYKQSNEKFWEYLHKLYENQGDESKIWATRKFILNFVKKNIDGIDYAKF 168 DS L A+AGEAIYKQ + FW + ++Y++Q +++ W T + +LN VK+ + +D A+F Sbjct: 105 DSDLGAAAGEAIYKQDKDSFWIFYDEIYQSQKKDTEEWITEELLLNIVKEKLPKVDIAQF 164 Query: 169 EQDLKNQTYMYDVKEDFKIAGSYGVNGTPKFMVDGVLL-PDSSYEGLTAAIEAGLAK 224 ++DL ++ V++D A V G P V+G L PD ++ + AAI+ L K Sbjct: 165 KKDLHSKEIKEKVRKDSDRAQKLKVQGAPSVYVNGNLANPD--FDSMKAAIDKELKK 219 >C3FY38.1 C3FY38_BACTU Disulfide bond formation protein D Length = 210 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 49 YEKQPHLGSENAKVKVIEFADFKCPACKKWTEAYLDTFIKDYVDTGKVQLYFMNFAFLDR 108 Y Q LG ++A VKV+EF DFKCPAC+ W L ++Y+D GKVQLYF+NF F+ + Sbjct: 36 YSTQQSLGKDDAPVKVVEFGDFKCPACRTWDVTVLPRLKEEYIDKGKVQLYFINFPFIGK 95 Query: 109 DSYLAASAGEAIYKQSNEKFWEYLHKLYENQGDESKIWATRKFILNFVKKNIDGIDYAKF 168 DS L A+AGEAIYKQ + FW + ++Y++Q +++ W T + +LN VK+ + ID A+F Sbjct: 96 DSDLGAAAGEAIYKQDQDSFWIFYDEIYQSQKKDTEEWITEELLLNIVKEKLPKIDVAQF 155 Query: 169 EQDLKNQTYMYDVKEDFKIAGSYGVNGTPKFMVDGVLL-PDSSYEGLTAAIEAGLAK 224 ++DL ++ V++D A V G P V+G L PD ++ L AI+ L K Sbjct: 156 KKDLHSKEIKEKVRKDSDRAQKLKVQGAPSVYVNGNLANPD--FDSLKKAIDKELKK 210 >C3BXE5.1 C3BXE5_BACTU Disulfide bond formation protein D Length = 210 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 49 YEKQPHLGSENAKVKVIEFADFKCPACKKWTEAYLDTFIKDYVDTGKVQLYFMNFAFLDR 108 Y Q LG ++A VKV+EF DFKCPAC+ W L ++Y+D GKVQLYF+NF F+ + Sbjct: 36 YSTQQSLGKDDAPVKVVEFGDFKCPACRTWDVTVLPRLKEEYIDKGKVQLYFINFPFIGK 95 Query: 109 DSYLAASAGEAIYKQSNEKFWEYLHKLYENQGDESKIWATRKFILNFVKKNIDGIDYAKF 168 DS L A+AGEAIYKQ + FW + ++Y++Q +++ W T + +LN VK+ + +D A+F Sbjct: 96 DSDLGAAAGEAIYKQDQDSFWTFYDEIYQSQKKDTEEWITEELLLNIVKEKLPKVDVAQF 155 Query: 169 EQDLKNQTYMYDVKEDFKIAGSYGVNGTPKFMVDGVLL-PDSSYEGLTAAIEAGLAK 224 ++DL ++ V++D A V G P V+G L PD ++ + AI+ L K Sbjct: 156 KKDLHSKEIKEKVRKDSDRAQKLKVQGAPSVYVNGNLANPD--FDSMKKAIDKELKK 210 >C2QN36.1 C2QN36_BACCE Disulfide bond formation protein D Length = 210 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 49 YEKQPHLGSENAKVKVIEFADFKCPACKKWTEAYLDTFIKDYVDTGKVQLYFMNFAFLDR 108 Y Q LG ++A VKV+EF DFKCPAC+ W L ++Y+D GKVQLYF+NF F+ + Sbjct: 36 YSTQQSLGKDDAPVKVVEFGDFKCPACRTWDVTVLPRLKEEYIDKGKVQLYFINFPFIGK 95 Query: 109 DSYLAASAGEAIYKQSNEKFWEYLHKLYENQGDESKIWATRKFILNFVKKNIDGIDYAKF 168 DS L A+AGEAIYKQ + FW + ++Y++Q +++ W T + +LN VK+ + +D A+F Sbjct: 96 DSDLGAAAGEAIYKQDQDSFWTFYDEIYQSQKKDTEEWITEELLLNIVKEKLPKVDVAQF 155 Query: 169 EQDLKNQTYMYDVKEDFKIAGSYGVNGTPKFMVDGVLL-PDSSYEGLTAAIEAGLAK 224 ++DL ++ V++D A V G P V+G L PD ++ + AI+ L K Sbjct: 156 KKDLHSKEIKEKVRKDSDRAQKLKVQGAPSVYVNGNLANPD--FDSMKKAIDKELKK 210 >C3HDH5.1 C3HDH5_BACTU Disulfide bond formation protein D Length = 210 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 49 YEKQPHLGSENAKVKVIEFADFKCPACKKWTEAYLDTFIKDYVDTGKVQLYFMNFAFLDR 108 Y Q LG ++A VKV+EF DFKCPAC+ W L ++Y+D GKVQLYF+NF F+ + Sbjct: 36 YSTQQSLGKDDAPVKVVEFGDFKCPACRTWDVTVLPRLKEEYIDKGKVQLYFINFPFIGK 95 Query: 109 DSYLAASAGEAIYKQSNEKFWEYLHKLYENQGDESKIWATRKFILNFVKKNIDGIDYAKF 168 DS L A+AGEAIYKQ + FW + ++Y++Q +++ W T + +LN VK+ + +D A+F Sbjct: 96 DSDLGAAAGEAIYKQDKDSFWTFYDEIYQSQKKDTEEWITEELLLNIVKEKLPKVDVAQF 155 Query: 169 EQDLKNQTYMYDVKEDFKIAGSYGVNGTPKFMVDGVLL-PDSSYEGLTAAIEAGLAK 224 ++DL ++ V++D A V G P V+G L PD ++ + AI+ L K Sbjct: 156 KKDLHSKEIKEKVRKDSDRAQKLKVQGAPSVYVNGNLANPD--FDSMKKAIDKELKK 210 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,279,112,791 Number of extensions: 53977856 Number of successful extensions: 138986 Number of sequences better than 1.0e-05: 456 Number of HSP's gapped: 138931 Number of HSP's successfully gapped: 467 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)