BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0062.p
         (99 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q0I8J8.1 SYP_SYNS3 Prolyl-tRNA synthetase EC=6.1.1.15                  80   5e-14
B5EIT9.1 SYP_GEOBB Prolyl-tRNA synthetase EC=6.1.1.15                  77   4e-13
B3JZ91.1 B3JZ91_9DELT Prolyl-tRNA synthetase                           77   4e-13
A2C7N5.1 SYP_PROM3 Prolyl-tRNA synthetase EC=6.1.1.15                  76   9e-13
B0A6I0.1 B0A6I0_9CLOT Putative uncharacterized protein                 75   2e-12

>Q0I8J8.1 SYP_SYNS3 Prolyl-tRNA synthetase EC=6.1.1.15
          Length = 598

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 53/83 (63%)

Query: 2   SIQDEVQTXXXXXXXXXXXXXGIEVLLDDRDERAGVKFKDSILMGIPVTIVVGKAAAEGK 61
           ++QDEVQ              GI+VLLDDR ERAGVKFKD+ L+GIP  +VVG+AAAEG 
Sbjct: 504 NVQDEVQMALGEEIYNELLASGIDVLLDDRGERAGVKFKDADLIGIPWRVVVGRAAAEGN 563

Query: 62  VEFMDRGSNSKEVIGIAEAVSRI 84
           VE + R      V+  AEA+S +
Sbjct: 564 VELVKRSERDANVLSRAEAISSL 586


>B5EIT9.1 SYP_GEOBB Prolyl-tRNA synthetase EC=6.1.1.15
          Length = 573

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 51/66 (77%), Gaps = 1/66 (1%)

Query: 23  GIEVLLDDRDERAGVKFKDSILMGIPVTIVVG-KAAAEGKVEFMDRGSNSKEVIGIAEAV 81
           GIEVLLDDRDER G KFKD+ L+GIP+ IVVG KA AEGKVE  +R S   EV+ IAEA+
Sbjct: 501 GIEVLLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIAEAI 560

Query: 82  SRITSG 87
           +++ + 
Sbjct: 561 AKVKAA 566


>B3JZ91.1 B3JZ91_9DELT Prolyl-tRNA synthetase
          Length = 573

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 51/66 (77%), Gaps = 1/66 (1%)

Query: 23  GIEVLLDDRDERAGVKFKDSILMGIPVTIVVG-KAAAEGKVEFMDRGSNSKEVIGIAEAV 81
           GIEVLLDDRDER G KFKD+ L+GIP+ IVVG KA AEGKVE  +R S   EV+ IAEA+
Sbjct: 501 GIEVLLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIAEAI 560

Query: 82  SRITSG 87
           +++ + 
Sbjct: 561 AKVKAA 566


>A2C7N5.1 SYP_PROM3 Prolyl-tRNA synthetase EC=6.1.1.15
          Length = 599

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 53/83 (63%)

Query: 2   SIQDEVQTXXXXXXXXXXXXXGIEVLLDDRDERAGVKFKDSILMGIPVTIVVGKAAAEGK 61
           +IQDEVQ               IEVLLDDR+ERAGVKFKD+ L+GIP  IVVG+ AA+G+
Sbjct: 505 NIQDEVQQKLAEQLYSELQAADIEVLLDDRNERAGVKFKDADLIGIPWRIVVGRDAAKGQ 564

Query: 62  VEFMDRGSNSKEVIGIAEAVSRI 84
           VE + R S   E++   +A + +
Sbjct: 565 VELIQRSSRKVEILSATQAFTAL 587


>B0A6I0.1 B0A6I0_9CLOT Putative uncharacterized protein
          Length = 566

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 48/73 (65%)

Query: 23  GIEVLLDDRDERAGVKFKDSILMGIPVTIVVGKAAAEGKVEFMDRGSNSKEVIGIAEAVS 82
           G+EVLLDDR+ERAG KFKDS L+GIP+ I VGK   +GKVEF  R    KE+I + E + 
Sbjct: 493 GVEVLLDDRNERAGFKFKDSDLLGIPMRITVGKDIVDGKVEFKLRKEADKEIISVDEVLD 552

Query: 83  RITSGGTAEGVKF 95
           R+ +      VK 
Sbjct: 553 RVKAEFAKNNVKL 565


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.135    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 460,710,880
Number of extensions: 15128758
Number of successful extensions: 30098
Number of sequences better than 1.0e-05: 644
Number of HSP's gapped: 30181
Number of HSP's successfully gapped: 644
Length of query: 99
Length of database: 3,060,696,203
Length adjustment: 68
Effective length of query: 31
Effective length of database: 2,420,067,183
Effective search space: 75022082673
Effective search space used: 75022082673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)