BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0059.p
         (127 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6M6.1 B3K6M6_9BACI Glutamate synthase, NADH/NADPH, small subunit   229   6e-59
B1DLZ7.1 B1DLZ7_9BACL Glutamate synthase, NADH/NADPH, small subunit   198   1e-49
Q8ELW6.1 Q8ELW6_OCEIH Glutamate synthase [NADPH] small subunit E...   173   4e-42
Q0E5H4.1 Q0E5H4_SPOHA Glutamate synthase small subunit                171   2e-41
Q9KC45.1 Q9KC45_BACHD Glutamate synthase (Small subunit)              170   5e-41

>B3K6M6.1 B3K6M6_9BACI Glutamate synthase, NADH/NADPH, small subunit
          Length = 495

 Score =  229 bits (584), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/127 (84%), Positives = 119/127 (93%)

Query: 1   MTTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQD 60
           MTTKFVGD+EGNLKELHTVQI+R+VDETGRK+YQPIPGTE  +PAQ+A IAIGFDGPEQ 
Sbjct: 369 MTTKFVGDDEGNLKELHTVQIERIVDETGRKVYQPIPGTEKAFPAQMAFIAIGFDGPEQT 428

Query: 61  IIEELKLDTDRRSNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKYL 120
           ++E+L L+TDRRSNVKA YGK+ TNVDKVFAAGDMRRGQSLVVWAINEGRE AREVDKYL
Sbjct: 429 LVEQLGLETDRRSNVKAPYGKYTTNVDKVFAAGDMRRGQSLVVWAINEGREVAREVDKYL 488

Query: 121 MGSTVLV 127
           MG+TVLV
Sbjct: 489 MGATVLV 495


>B1DLZ7.1 B1DLZ7_9BACL Glutamate synthase, NADH/NADPH, small subunit
          Length = 496

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 110/127 (86%), Gaps = 1/127 (0%)

Query: 1   MTTKFVGDEEGNLKELHTVQIQRMVDE-TGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQ 59
           +T KFVGD  GNLKELHTVQI+R VDE TGR+IY+ IPGTE V+PA L  IA+GF+GPE+
Sbjct: 369 LTKKFVGDGNGNLKELHTVQIERTVDEETGRRIYKDIPGTEKVWPADLVFIAVGFEGPEK 428

Query: 60  DIIEELKLDTDRRSNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKY 119
            +I+   L+ DRR+NVKA YGK+ TNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKY
Sbjct: 429 TLIDSFGLEQDRRTNVKATYGKYKTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKY 488

Query: 120 LMGSTVL 126
           LMGS++L
Sbjct: 489 LMGSSML 495


>Q8ELW6.1 Q8ELW6_OCEIH Glutamate synthase [NADPH] small subunit EC=1.4.1.13
          Length = 494

 Score =  173 bits (439), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 102/125 (81%), Gaps = 1/125 (0%)

Query: 2   TTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQDI 61
           TTKFVGDE G++KE+HT+ ++    E G+KI + IPGTE V+PA L L+AIGF GP+QD+
Sbjct: 370 TTKFVGDENGHVKEVHTINVKTRY-EGGKKIREEIPGTEKVWPADLVLVAIGFQGPDQDL 428

Query: 62  IEELKLDTDRRSNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKYLM 121
           IE L ++T  RS VKA+YG+F TN+D VFAAGDMRRGQSL+VWAINEGR AARE D++LM
Sbjct: 429 IESLDVETTTRSTVKAKYGEFQTNIDGVFAAGDMRRGQSLIVWAINEGRGAARECDRFLM 488

Query: 122 GSTVL 126
           G T+L
Sbjct: 489 GDTIL 493


>Q0E5H4.1 Q0E5H4_SPOHA Glutamate synthase small subunit
          Length = 495

 Score =  171 bits (433), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 99/126 (78%)

Query: 1   MTTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQD 60
           MT KFVGDE   +KE+HT+ +    D+ G K+   IPGTE V+PA L L+AIGF GPEQD
Sbjct: 369 MTKKFVGDENNRIKEVHTIDVALSFDDEGNKVRTEIPGTEKVWPADLVLLAIGFSGPEQD 428

Query: 61  IIEELKLDTDRRSNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKYL 120
           +IE+L ++T  R+NV A+YGK+ TNV+ VFAAGDMRRGQSL+VWAINEGRE ARE D+++
Sbjct: 429 LIEKLGIETTVRTNVAAQYGKYTTNVEGVFAAGDMRRGQSLIVWAINEGREVARECDRFM 488

Query: 121 MGSTVL 126
           MGST L
Sbjct: 489 MGSTQL 494


>Q9KC45.1 Q9KC45_BACHD Glutamate synthase (Small subunit)
          Length = 495

 Score =  170 bits (430), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 100/126 (79%)

Query: 1   MTTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQD 60
           MTTKFVGD EG++KE+HT+ ++  V   G K    IPGTE V+PA L  +A+GF GPE+ 
Sbjct: 369 MTTKFVGDAEGHVKEIHTISVETTVHPDGSKTRVEIPGTEKVWPADLVFLAVGFTGPEEQ 428

Query: 61  IIEELKLDTDRRSNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKYL 120
           ++ EL+L+TD RSN+KA YGK+ T+++ VFAAGD RRGQSLVVWAI+EGREAARE DKYL
Sbjct: 429 LVRELELETDTRSNIKAEYGKYETSLEGVFAAGDNRRGQSLVVWAIHEGREAARECDKYL 488

Query: 121 MGSTVL 126
           MG++ L
Sbjct: 489 MGASNL 494


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 754,629,714
Number of extensions: 28903742
Number of successful extensions: 78755
Number of sequences better than 1.0e-05: 1186
Number of HSP's gapped: 78085
Number of HSP's successfully gapped: 1186
Length of query: 127
Length of database: 3,060,696,203
Length adjustment: 92
Effective length of query: 35
Effective length of database: 2,193,962,823
Effective search space: 76788698805
Effective search space used: 76788698805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)