BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0052.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6N0.1 B3K6N0_9BACI Catalytic domain of component of various d...   120   5e-26
B1DLS1.1 B1DLS1_9BACL Catalytic domain of components of various ...   115   1e-24
C1P7H8.1 C1P7H8_BACCO Catalytic domain of components of various ...   105   1e-21
A3I4P5.1 A3I4P5_9BACI Branched-chain alpha-keto acid dehydrogena...   104   3e-21
B1HPS1.1 B1HPS1_LYSSC Dihydrolipoyllysine-residue acetyltransfer...   104   3e-21

>B3K6N0.1 B3K6N0_9BACI Catalytic domain of component of various dehydrogenase
           complexes
          Length = 440

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 1   VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60
           VAILGTGRI+EK VVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIK LLANP++LV
Sbjct: 378 VAILGTGRISEKAVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKQLLANPELLV 437

Query: 61  MEV 63
           MEV
Sbjct: 438 MEV 440


>B1DLS1.1 B1DLS1_9BACL Catalytic domain of components of various
           dehydrogenase complexes
          Length = 434

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 59/63 (93%)

Query: 1   VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60
           VAILGTGRI+EKPVV+NGEIVAAPVMALSLSFDHR+IDGATAQNFMNYIK LL  P++ +
Sbjct: 372 VAILGTGRISEKPVVRNGEIVAAPVMALSLSFDHRLIDGATAQNFMNYIKQLLGQPELFI 431

Query: 61  MEV 63
           MEV
Sbjct: 432 MEV 434


>C1P7H8.1 C1P7H8_BACCO Catalytic domain of components of various
           dehydrogenase complexes
          Length = 437

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 57/62 (91%)

Query: 1   VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60
           VAILG GRI EKPVVKNGEIVAAPV+ALSLSFDHRIIDGATAQN +N+IK LL +P++L+
Sbjct: 375 VAILGIGRIAEKPVVKNGEIVAAPVLALSLSFDHRIIDGATAQNALNHIKRLLHDPELLL 434

Query: 61  ME 62
           ME
Sbjct: 435 ME 436


>A3I4P5.1 A3I4P5_9BACI Branched-chain alpha-keto acid dehydrogenase E2
           subunit
          Length = 445

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 58/62 (93%)

Query: 1   VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60
           VAILG GRI+EKPV+KNGEIVAAPV+ALSLSFDHR+IDGATAQN +N++K LL+ P++L+
Sbjct: 383 VAILGIGRISEKPVIKNGEIVAAPVLALSLSFDHRMIDGATAQNALNHLKRLLSEPELLL 442

Query: 61  ME 62
           ME
Sbjct: 443 ME 444


>B1HPS1.1 B1HPS1_LYSSC Dihydrolipoyllysine-residue acetyltransferase
           component of pyruvate dehydrogenase complex EC=2.3.1.12
          Length = 444

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 58/62 (93%)

Query: 1   VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60
           VAILG GRI+EKPV+KNGEIVAAPV+ALSLSFDHR+IDGATAQN +N++K LL+ P++L+
Sbjct: 382 VAILGIGRISEKPVIKNGEIVAAPVLALSLSFDHRMIDGATAQNALNHLKRLLSEPELLL 441

Query: 61  ME 62
           ME
Sbjct: 442 ME 443


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.137    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 352,043,347
Number of extensions: 10241141
Number of successful extensions: 27627
Number of sequences better than 1.0e-05: 1347
Number of HSP's gapped: 27863
Number of HSP's successfully gapped: 1347
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)