BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0051.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6N0.1 B3K6N0_9BACI Catalytic domain of component of various d...   224   1e-57
B1DLS1.1 B1DLS1_9BACL Catalytic domain of components of various ...   187   2e-46
B7DQH3.1 B7DQH3_9BACL Dihydrolipoyllysine-residue succinyltransf...   167   3e-40
C1PV53.1 C1PV53_ALIAC Pyruvate/2-oxoglutarate dehydrogenase comp...   166   4e-40
B1YJ80.1 B1YJ80_EXIS2 Dihydrolipoyllysine-residue (2-methylpropa...   160   4e-38

>B3K6N0.1 B3K6N0_9BACI Catalytic domain of component of various dehydrogenase
           complexes
          Length = 440

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/119 (91%), Positives = 112/119 (94%)

Query: 1   VDVTELVAFRARMKPVAEKKGVKVTYLPFIVKALVAASRQFPALNATIDEAANEIVYKKY 60
           VDVTELVAFR RMKP+AEKKG KVTYLPFIVKALVAASRQFPALNA IDE ANEIVYKKY
Sbjct: 242 VDVTELVAFRTRMKPIAEKKGTKVTYLPFIVKALVAASRQFPALNAMIDEEANEIVYKKY 301

Query: 61  YNIGIATDTDNGLIVPVIKDADRKSIWMIASAITDLALRGRDGKLAPNEMKGSTISITN 119
           YNIGIATDTDNGLIVPVIKDADRKSIWMIA +I DLA RGR+GKLAPNEMKGSTISITN
Sbjct: 302 YNIGIATDTDNGLIVPVIKDADRKSIWMIADSIRDLAARGREGKLAPNEMKGSTISITN 360


>B1DLS1.1 B1DLS1_9BACL Catalytic domain of components of various
           dehydrogenase complexes
          Length = 434

 Score =  187 bits (476), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 106/119 (89%)

Query: 1   VDVTELVAFRARMKPVAEKKGVKVTYLPFIVKALVAASRQFPALNATIDEAANEIVYKKY 60
           VDVTELVA RA+ KP AEKKG K+TYLPFIVKALVAA RQFP +NAT+DEA  EIVYKK+
Sbjct: 236 VDVTELVALRAKYKPYAEKKGSKLTYLPFIVKALVAACRQFPIMNATLDEANQEIVYKKF 295

Query: 61  YNIGIATDTDNGLIVPVIKDADRKSIWMIASAITDLALRGRDGKLAPNEMKGSTISITN 119
           YNIGIATDTDNGLIVPVI+DADRK+I+M+A  I DLA++GR+GKL+  E+KGSTI+I+N
Sbjct: 296 YNIGIATDTDNGLIVPVIEDADRKNIFMVADKIRDLAVKGREGKLSAAELKGSTITISN 354


>B7DQH3.1 B7DQH3_9BACL Dihydrolipoyllysine-residue succinyltransferase
           EC=2.3.1.61
          Length = 436

 Score =  167 bits (423), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 95/119 (79%)

Query: 1   VDVTELVAFRARMKPVAEKKGVKVTYLPFIVKALVAASRQFPALNATIDEAANEIVYKKY 60
           VDVTELV  R  +KP+A+++G+K+TYLPFIVKAL+AA R  P LNA+ DE   E+V K Y
Sbjct: 238 VDVTELVKLRNEVKPIAQERGIKITYLPFIVKALIAALRTKPQLNASYDEEKQELVIKHY 297

Query: 61  YNIGIATDTDNGLIVPVIKDADRKSIWMIASAITDLALRGRDGKLAPNEMKGSTISITN 119
           Y+IGIATDT+ GL+VPV++ ADRK+IW IA  I DLA RGR GKL P EMKGSTISITN
Sbjct: 298 YHIGIATDTERGLLVPVVRHADRKNIWTIAQEINDLATRGRAGKLKPEEMKGSTISITN 356


>C1PV53.1 C1PV53_ALIAC Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase component
          Length = 436

 Score =  166 bits (421), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 95/119 (79%)

Query: 1   VDVTELVAFRARMKPVAEKKGVKVTYLPFIVKALVAASRQFPALNATIDEAANEIVYKKY 60
           VDVTELV  R  +KP+A+++G+K+TYLPFIVKAL+AA R  P LNA+ DE   E+V K Y
Sbjct: 238 VDVTELVKLRNEVKPLAQERGIKITYLPFIVKALIAALRTKPQLNASYDEEKQELVIKHY 297

Query: 61  YNIGIATDTDNGLIVPVIKDADRKSIWMIASAITDLALRGRDGKLAPNEMKGSTISITN 119
           Y+IGIATDT+ GL+VPV++ ADRK+IW IA  I DLA RGR GKL P EMKGSTISITN
Sbjct: 298 YHIGIATDTERGLLVPVVRHADRKNIWTIAQEINDLATRGRAGKLKPEEMKGSTISITN 356


>B1YJ80.1 B1YJ80_EXIS2 Dihydrolipoyllysine-residue
           (2-methylpropanoyl)transferase EC=2.3.1.168
          Length = 432

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 96/119 (80%)

Query: 1   VDVTELVAFRARMKPVAEKKGVKVTYLPFIVKALVAASRQFPALNATIDEAANEIVYKKY 60
           VDVT LVA R   K VA  +G K+TYLPF+VKAL AA++++PA+NA+ID+   E+VYK Y
Sbjct: 234 VDVTNLVALRKNFKEVAAAQGTKLTYLPFVVKALTAAAKKYPAINASIDDVNEEVVYKNY 293

Query: 61  YNIGIATDTDNGLIVPVIKDADRKSIWMIASAITDLALRGRDGKLAPNEMKGSTISITN 119
           +NIGIA DTDNGL+VPV+KDADRKSI+ +A  I DLA + RDGKL+ +EMKG +I+ITN
Sbjct: 294 FNIGIAADTDNGLVVPVVKDADRKSIFGLADNINDLAGKARDGKLSGDEMKGGSITITN 352


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 693,850,895
Number of extensions: 24520100
Number of successful extensions: 57176
Number of sequences better than 1.0e-05: 3324
Number of HSP's gapped: 55123
Number of HSP's successfully gapped: 3324
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)