BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0040.p (497 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6P2.1 B3K6P2_9BACI ABC transporter related 746 0.0 C3BT63.1 C3BT63_9BACI ABC transporter ATP-binding protein uup 657 0.0 C3BB38.1 C3BB38_BACMY ABC transporter ATP-binding protein uup 657 0.0 C3ATR2.1 C3ATR2_BACMY ABC transporter ATP-binding protein uup 657 0.0 B1DA49.1 B1DA49_9BACL ABC transporter related 655 0.0 >B3K6P2.1 B3K6P2_9BACI ABC transporter related Length = 517 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/447 (80%), Positives = 386/447 (86%) Query: 1 MSLLTVEDVSHNFGDRQLFKNVSFRLLAGEHVGLVGANGVGKSTLMNILTGKLLKDSGRV 60 MSLLTVE+VSHNFGDR LFKNVSFRLLAGEHVGLVGANGVGKSTLMNILTG+LLKDSG+V Sbjct: 1 MSLLTVENVSHNFGDRTLFKNVSFRLLAGEHVGLVGANGVGKSTLMNILTGQLLKDSGKV 60 Query: 61 EWTPKVRYGYLDQHTLLTPGKTIRDVLKDAFLPLLELENEMMAITGKMGEADPXXXXXXX 120 EWTPK+RYGYLDQHT LTPGKT+RDVLKDAFLPLLELE EMM IT KM +A P Sbjct: 61 EWTPKIRYGYLDQHTKLTPGKTVRDVLKDAFLPLLELEKEMMEITNKMSDATPEELELLL 120 Query: 121 XXXXXXXXXXDIGDFYLIDVKVEEMGNGLGLSAIGLDRDVSTLSGGQRTXXXXXXXXXXX 180 DIGDFY++DVKVEEM NGLGLS IGLDRDV+TLSGGQRT Sbjct: 121 EQMGEIQEQLDIGDFYMLDVKVEEMANGLGLSVIGLDRDVATLSGGQRTKVLLAKLLLEK 180 Query: 181 XXXXXXDEPTNYLDVEHFDWLTNYLKQYPYAFILISHDTEFMNKVVGVVYHLEFAKLTRY 240 DEPTNYLDVEH +WLT YLKQYPYAFILISHDTEFMN+VV V+YHLEFAKLTRY Sbjct: 181 PNVLLLDEPTNYLDVEHIEWLTQYLKQYPYAFILISHDTEFMNQVVDVIYHLEFAKLTRY 240 Query: 241 TANYERFLEMADMNKIQHIDAYEKQQEFIKKQEDFIQRNKARASTSGRAKSREKQLDRME 300 TANYE+FLEMAD+NK QHIDAYEKQQEFIKKQEDFIQRNKAR STSGRAKSREKQLDRME Sbjct: 241 TANYEKFLEMADINKNQHIDAYEKQQEFIKKQEDFIQRNKARYSTSGRAKSREKQLDRME 300 Query: 301 RIDRPEEAAKPSFSFKESRASGKTVFEGLDFEIGYDRPLLPKLNMTIERGEKIAIVGCNG 360 RIDRPEEAAKP F+FKE+RASGKTVFEG+DFEIGYDRPLLPK+++ IERGEKIAIVGCNG Sbjct: 301 RIDRPEEAAKPVFNFKEARASGKTVFEGIDFEIGYDRPLLPKMSIMIERGEKIAIVGCNG 360 Query: 361 IGKSTLLKTILGVIPAYSGKTYLGDYLNAAYFQQEVKAANLTPIDDVWNEFSSLNQHEVR 420 +GKSTLLKTILG IPA+SGKTY GD+L AYF+QEV+ N+TPIDDVWNEFS LNQHEVR Sbjct: 361 VGKSTLLKTILGKIPAFSGKTYQGDFLVPAYFEQEVRPGNITPIDDVWNEFSHLNQHEVR 420 Query: 421 AHLARCGLKNEHITRPLSMLSGGEQAK 447 A LA CGLKNEHITRP+ LSGGEQAK Sbjct: 421 AALAHCGLKNEHITRPMKALSGGEQAK 447 >C3BT63.1 C3BT63_9BACI ABC transporter ATP-binding protein uup Length = 530 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/447 (70%), Positives = 355/447 (79%) Query: 1 MSLLTVEDVSHNFGDRQLFKNVSFRLLAGEHVGLVGANGVGKSTLMNILTGKLLKDSGRV 60 MSLLTVE++ H FGDR LFK+VS RLLAGEHVGLVGANGVGKST MNI+TG+L+ D GRV Sbjct: 14 MSLLTVENLGHTFGDRTLFKDVSMRLLAGEHVGLVGANGVGKSTFMNIITGQLIHDEGRV 73 Query: 61 EWTPKVRYGYLDQHTLLTPGKTIRDVLKDAFLPLLELENEMMAITGKMGEADPXXXXXXX 120 EWTP YGYLDQHT+LTPG+TIRDVL DAFLPL E E E+ +T KMG A P Sbjct: 74 EWTPGTHYGYLDQHTILTPGRTIRDVLTDAFLPLFEKEKELNIVTEKMGTATPEELEELL 133 Query: 121 XXXXXXXXXXDIGDFYLIDVKVEEMGNGLGLSAIGLDRDVSTLSGGQRTXXXXXXXXXXX 180 + G FYL+D+K+EE GLG+ AIGLDRDVS LSGGQRT Sbjct: 134 DQMAEIQDALEAGGFYLLDIKIEEAARGLGIDAIGLDRDVSALSGGQRTKVLLAKLLLEQ 193 Query: 181 XXXXXXDEPTNYLDVEHFDWLTNYLKQYPYAFILISHDTEFMNKVVGVVYHLEFAKLTRY 240 DEPTNYLDVEH WLTNYLK+YP+AF+LISHDTEFMNK V V++HLEF+K+TRY Sbjct: 194 PEVLLLDEPTNYLDVEHIQWLTNYLKEYPHAFLLISHDTEFMNKCVDVIFHLEFSKMTRY 253 Query: 241 TANYERFLEMADMNKIQHIDAYEKQQEFIKKQEDFIQRNKARASTSGRAKSREKQLDRME 300 TA YE+FLE+A++NK QH++AY+KQQEFIKKQEDFI +NKAR ST+GRAKSR+KQLDRME Sbjct: 254 TATYEKFLELAEINKNQHLNAYQKQQEFIKKQEDFIAKNKARYSTTGRAKSRQKQLDRME 313 Query: 301 RIDRPEEAAKPSFSFKESRASGKTVFEGLDFEIGYDRPLLPKLNMTIERGEKIAIVGCNG 360 RIDRPE A KP FSFKE RAS + VFEG D EIGY LLPKL MTIERGEKIAIVGCNG Sbjct: 314 RIDRPETAIKPEFSFKECRASSRFVFEGEDVEIGYTHALLPKLTMTIERGEKIAIVGCNG 373 Query: 361 IGKSTLLKTILGVIPAYSGKTYLGDYLNAAYFQQEVKAANLTPIDDVWNEFSSLNQHEVR 420 +GKSTLLKTILG I SGKT LGD+L AYF+QEVKA NLTPIDDVWN F SL+QH+VR Sbjct: 374 VGKSTLLKTILGKIKPLSGKTSLGDFLEPAYFEQEVKAENLTPIDDVWNTFPSLDQHQVR 433 Query: 421 AHLARCGLKNEHITRPLSMLSGGEQAK 447 A LARCGLKNEHI+RPLS LSGGEQAK Sbjct: 434 AMLARCGLKNEHISRPLSQLSGGEQAK 460 >C3BB38.1 C3BB38_BACMY ABC transporter ATP-binding protein uup Length = 530 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/447 (70%), Positives = 355/447 (79%) Query: 1 MSLLTVEDVSHNFGDRQLFKNVSFRLLAGEHVGLVGANGVGKSTLMNILTGKLLKDSGRV 60 MSLLTVE++ H FGDR LFK+VS RLLAGEHVGLVGANGVGKST MNI+TG+L+ D GRV Sbjct: 14 MSLLTVENLGHTFGDRTLFKDVSMRLLAGEHVGLVGANGVGKSTFMNIITGQLIHDEGRV 73 Query: 61 EWTPKVRYGYLDQHTLLTPGKTIRDVLKDAFLPLLELENEMMAITGKMGEADPXXXXXXX 120 EWTP YGYLDQHT+LTPG+TIRDVL DAFLPL E E E+ +T KMG A P Sbjct: 74 EWTPGTHYGYLDQHTILTPGRTIRDVLTDAFLPLFEKEKELNIVTEKMGTATPEELEELL 133 Query: 121 XXXXXXXXXXDIGDFYLIDVKVEEMGNGLGLSAIGLDRDVSTLSGGQRTXXXXXXXXXXX 180 + G FYL+D+K+EE GLG+ AIGLDRDVS LSGGQRT Sbjct: 134 DQMAEIQDALEAGGFYLLDIKIEEAARGLGIDAIGLDRDVSALSGGQRTKVLLAKLLLEQ 193 Query: 181 XXXXXXDEPTNYLDVEHFDWLTNYLKQYPYAFILISHDTEFMNKVVGVVYHLEFAKLTRY 240 DEPTNYLDVEH WLTNYLK+YP+AF+LISHDTEFMNK V V++HLEF+K+TRY Sbjct: 194 PEVLLLDEPTNYLDVEHIQWLTNYLKEYPHAFLLISHDTEFMNKCVDVIFHLEFSKMTRY 253 Query: 241 TANYERFLEMADMNKIQHIDAYEKQQEFIKKQEDFIQRNKARASTSGRAKSREKQLDRME 300 TA YE+FLE+A++NK QH++AY+KQQEFIKKQEDFI +NKAR ST+GRAKSR+KQLDRME Sbjct: 254 TATYEKFLELAEINKNQHLNAYQKQQEFIKKQEDFIAKNKARYSTTGRAKSRQKQLDRME 313 Query: 301 RIDRPEEAAKPSFSFKESRASGKTVFEGLDFEIGYDRPLLPKLNMTIERGEKIAIVGCNG 360 RIDRPE A KP FSFKE RAS + VFEG D EIGY LLPKL MTIERGEKIAIVGCNG Sbjct: 314 RIDRPETAIKPEFSFKECRASSRFVFEGEDVEIGYTHALLPKLTMTIERGEKIAIVGCNG 373 Query: 361 IGKSTLLKTILGVIPAYSGKTYLGDYLNAAYFQQEVKAANLTPIDDVWNEFSSLNQHEVR 420 +GKSTLLKTILG I SGKT LGD+L AYF+QEVKA NLTPIDDVWN F SL+QH+VR Sbjct: 374 VGKSTLLKTILGKIKPLSGKTSLGDFLEPAYFEQEVKAENLTPIDDVWNTFPSLDQHQVR 433 Query: 421 AHLARCGLKNEHITRPLSMLSGGEQAK 447 A LARCGLKNEHI+RPLS LSGGEQAK Sbjct: 434 AMLARCGLKNEHISRPLSQLSGGEQAK 460 >C3ATR2.1 C3ATR2_BACMY ABC transporter ATP-binding protein uup Length = 530 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/447 (70%), Positives = 355/447 (79%) Query: 1 MSLLTVEDVSHNFGDRQLFKNVSFRLLAGEHVGLVGANGVGKSTLMNILTGKLLKDSGRV 60 MSLLTVE++ H FGDR LFK+VS RLLAGEHVGLVGANGVGKST MNI+TG+L+ D GRV Sbjct: 14 MSLLTVENLGHTFGDRTLFKDVSMRLLAGEHVGLVGANGVGKSTFMNIITGQLIHDEGRV 73 Query: 61 EWTPKVRYGYLDQHTLLTPGKTIRDVLKDAFLPLLELENEMMAITGKMGEADPXXXXXXX 120 EWTP YGYLDQHT+LTPG+TIRDVL DAFLPL E E E+ +T KMG A P Sbjct: 74 EWTPGTHYGYLDQHTILTPGRTIRDVLTDAFLPLFEKEKELNIVTEKMGTATPEELEELL 133 Query: 121 XXXXXXXXXXDIGDFYLIDVKVEEMGNGLGLSAIGLDRDVSTLSGGQRTXXXXXXXXXXX 180 + G FYL+D+K+EE GLG+ AIGLDRDVS LSGGQRT Sbjct: 134 DQMAEIQDALEAGGFYLLDIKIEEAARGLGIDAIGLDRDVSALSGGQRTKVLLAKLLLEQ 193 Query: 181 XXXXXXDEPTNYLDVEHFDWLTNYLKQYPYAFILISHDTEFMNKVVGVVYHLEFAKLTRY 240 DEPTNYLDVEH WLTNYLK+YP+AF+LISHDTEFMNK V V++HLEF+K+TRY Sbjct: 194 PEVLLLDEPTNYLDVEHIQWLTNYLKEYPHAFLLISHDTEFMNKCVDVIFHLEFSKMTRY 253 Query: 241 TANYERFLEMADMNKIQHIDAYEKQQEFIKKQEDFIQRNKARASTSGRAKSREKQLDRME 300 TA YE+FLE+A++NK QH++AY+KQQEFIKKQEDFI +NKAR ST+GRAKSR+KQLDRME Sbjct: 254 TATYEKFLELAEINKNQHLNAYQKQQEFIKKQEDFIAKNKARYSTTGRAKSRQKQLDRME 313 Query: 301 RIDRPEEAAKPSFSFKESRASGKTVFEGLDFEIGYDRPLLPKLNMTIERGEKIAIVGCNG 360 RIDRPE A KP FSFKE RAS + VFEG D EIGY LLPKL MTIERGEKIAIVGCNG Sbjct: 314 RIDRPETAIKPEFSFKECRASSRFVFEGEDVEIGYTHALLPKLTMTIERGEKIAIVGCNG 373 Query: 361 IGKSTLLKTILGVIPAYSGKTYLGDYLNAAYFQQEVKAANLTPIDDVWNEFSSLNQHEVR 420 +GKSTLLKTILG I SGKT LGD+L AYF+QEVKA NLTPIDDVWN F SL+QH+VR Sbjct: 374 VGKSTLLKTILGKIKPLSGKTSLGDFLEPAYFEQEVKAENLTPIDDVWNTFPSLDQHQVR 433 Query: 421 AHLARCGLKNEHITRPLSMLSGGEQAK 447 A LARCGLKNEHI+RPLS LSGGEQAK Sbjct: 434 AMLARCGLKNEHISRPLSQLSGGEQAK 460 >B1DA49.1 B1DA49_9BACL ABC transporter related Length = 518 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/447 (71%), Positives = 369/447 (82%) Query: 1 MSLLTVEDVSHNFGDRQLFKNVSFRLLAGEHVGLVGANGVGKSTLMNILTGKLLKDSGRV 60 MSLLTVE +SH FGDR LFK+VSFRLL GEH+GLVGANG GKSTLMNILTGKLLKD G+V Sbjct: 1 MSLLTVEQLSHTFGDRVLFKDVSFRLLEGEHIGLVGANGTGKSTLMNILTGKLLKDEGKV 60 Query: 61 EWTPKVRYGYLDQHTLLTPGKTIRDVLKDAFLPLLELENEMMAITGKMGEADPXXXXXXX 120 EWTP+VRYGYLDQHT L GKTIRDVLKDAFLPLL LE E+ I +MG+AD Sbjct: 61 EWTPRVRYGYLDQHTKLEAGKTIRDVLKDAFLPLLVLEEELNDIAAQMGDADSDTLEQLL 120 Query: 121 XXXXXXXXXXDIGDFYLIDVKVEEMGNGLGLSAIGLDRDVSTLSGGQRTXXXXXXXXXXX 180 +IGDFYLIDVKV+EM NGLGL+AIGLDRDV+ LSGGQRT Sbjct: 121 VRMGEIQEELEIGDFYLIDVKVDEMANGLGLNAIGLDRDVTALSGGQRTKVLLAKLLLEK 180 Query: 181 XXXXXXDEPTNYLDVEHFDWLTNYLKQYPYAFILISHDTEFMNKVVGVVYHLEFAKLTRY 240 DEPTNYLD EH +WLTNYLK YP+AF+LISH+T FMN+VV V+YHLEF +LTRY Sbjct: 181 PGVLLLDEPTNYLDEEHINWLTNYLKNYPHAFVLISHETGFMNQVVNVIYHLEFTRLTRY 240 Query: 241 TANYERFLEMADMNKIQHIDAYEKQQEFIKKQEDFIQRNKARASTSGRAKSREKQLDRME 300 TANYE+FLEMA++NK QHIDAY KQQ++IKKQE+FIQ+NKARASTSGRAKSREKQL R++ Sbjct: 241 TANYEKFLEMAELNKAQHIDAYAKQQDYIKKQEEFIQKNKARASTSGRAKSREKQLGRID 300 Query: 301 RIDRPEEAAKPSFSFKESRASGKTVFEGLDFEIGYDRPLLPKLNMTIERGEKIAIVGCNG 360 ID+PEEAAKP+F+FKESR SGKTVFE IGY++PLLPK++M IERG+KIAIVGCNG Sbjct: 301 LIDKPEEAAKPTFNFKESRTSGKTVFEAQGMVIGYNKPLLPKMDMVIERGDKIAIVGCNG 360 Query: 361 IGKSTLLKTILGVIPAYSGKTYLGDYLNAAYFQQEVKAANLTPIDDVWNEFSSLNQHEVR 420 +GKSTLLK+ILGVIP + GKTYLGDYL+ AYF+QE KA +TP++DVW+EFS ++QHEVR Sbjct: 361 VGKSTLLKSILGVIPPFEGKTYLGDYLSPAYFEQEAKAPTMTPLEDVWDEFSFMSQHEVR 420 Query: 421 AHLARCGLKNEHITRPLSMLSGGEQAK 447 A LARCGLKNEHITRPL+ LSGGEQAK Sbjct: 421 AALARCGLKNEHITRPLNQLSGGEQAK 447 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,664,690,484 Number of extensions: 108579683 Number of successful extensions: 682645 Number of sequences better than 1.0e-05: 7033 Number of HSP's gapped: 663866 Number of HSP's successfully gapped: 9819 Length of query: 497 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 357 Effective length of database: 1,741,754,103 Effective search space: 621806214771 Effective search space used: 621806214771 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)