BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0035.p
         (107 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6Q5.1 B3K6Q5_9BACI Putative uncharacterized protein                100   3e-20
C1P849.1 C1P849_BACCO Thioredoxin domain protein                       69   1e-10
C0ZE78.1 C0ZE78_BREBN Probable thioredoxin                             68   2e-10
B1HWK8.1 B1HWK8_LYSSC Thioredoxin                                      65   2e-09
C2C3C4.1 C2C3C4_LISGR Thioredoxin                                      63   9e-09

>B3K6Q5.1 B3K6Q5_9BACI Putative uncharacterized protein
          Length = 115

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 10/114 (8%)

Query: 1   MKEMNQQELLEALER---------KGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELL 51
           M E+ Q+ELLE LE          K +P++VF +TPLCGTC AAR+ML+V E ++P   +
Sbjct: 1   MIEVTQRELLERLEWQERLMKRDAKADPVIVFLHTPLCGTCAAARKMLDVVEFVVPDVQM 60

Query: 52  IAAGNVNMLPMLVNTYRISSVPALLVAPADRSKAPHIYYSMGSVERVLDYIRSV 105
           +AA +VN LP +V  Y+I SVPALL  P+       + Y MGSV+ ++ ++RSV
Sbjct: 61  LAA-DVNFLPGIVERYQIRSVPALLAIPSSPGANAEVLYRMGSVQDIVSFVRSV 113


>C1P849.1 C1P849_BACCO Thioredoxin domain protein
          Length = 102

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 1  MKEMNQQELLEALERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNML 60
          M++  +++ LE    + E L ++FYTPLCGTC+ A RMLE+AE  +P+    A  N+N +
Sbjct: 1  MQDWTKEKQLEERILQEEKLALYFYTPLCGTCQLAGRMLEIAEQAVPR-FPYAKANLNYV 59

Query: 61 PMLVNTYRISSVPALLV 77
          P +   Y+I SVP LL+
Sbjct: 60 PQMAEKYQIESVPCLLL 76


>C0ZE78.1 C0ZE78_BREBN Probable thioredoxin
          Length = 102

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 4/103 (3%)

Query: 1   MKEMNQQELLEALERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNML 60
           M+E+   EL++ L+ K E + +F YTP+CGTCK A RML + +  LP   L    N+N  
Sbjct: 1   MQELTSTELIQYLQEK-ESVALFVYTPMCGTCKLAARMLGIMQEALPTVPLYQI-NINTA 58

Query: 61  PMLVNTYRISSVPALLVAPADRSKAPHIYYSMGSVERVLDYIR 103
           P L   ++++SVPALL+   +   A H  Y++ SV  + D ++
Sbjct: 59  PALAEQWQVTSVPALLIFQRNELVARH--YAIQSVGFLYDVLK 99


>B1HWK8.1 B1HWK8_LYSSC Thioredoxin
          Length = 103

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 1  MKEMNQQELLEALERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNML 60
          M+E ++++   AL+  GE    + YTP+CGTC  A +M+ + E LLP  L +   N+N L
Sbjct: 1  MEEWSKEQWETALQS-GEKAAFYLYTPMCGTCAVASKMMSIVEQLLP-HLKLGKANINFL 58

Query: 61 PMLVNTYRISSVPALLVAPADRSKAPHIYYSMGSV 95
            +   ++I SVP LLV   D  K     Y+  SV
Sbjct: 59 EQIAFEHQIESVPCLLV--CDGGKVTEKIYAFQSV 91


>C2C3C4.1 C2C3C4_LISGR Thioredoxin
          Length = 101

 Score = 62.8 bits (151), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 10  LEALERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNMLPMLVNTYRI 69
           LE  E   +   V+F+TP+CG C+ A +++E+ E     E  +A  ++N +P +    +I
Sbjct: 9   LEQAESLDKNFYVYFFTPMCGACQFASQLIEIIEQSDDWEQPLAKMDLNFVPEVAERLQI 68

Query: 70  SSVPALLVAPADRSKAPHIYYSMGSVERVLDYIR 103
           +SVPAL+    +  KA  I Y +G++  + D+ +
Sbjct: 69  TSVPALVF--FENGKAKRISYDLGNISSIYDFFQ 100


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 559,380,602
Number of extensions: 18467050
Number of successful extensions: 51391
Number of sequences better than 1.0e-05: 97
Number of HSP's gapped: 51331
Number of HSP's successfully gapped: 97
Length of query: 107
Length of database: 3,060,696,203
Length adjustment: 75
Effective length of query: 32
Effective length of database: 2,354,120,078
Effective search space: 75331842496
Effective search space used: 75331842496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)