BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0029.p (316 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6R0.1 B3K6R0_9BACI Ribonuclease Z 388 e-106 C1PES2.1 C1PES2_BACCO Ribonuclease Z EC=3.1.26.11 311 7e-83 B4ALA7.1 B4ALA7_BACPU Ribonuclease Z EC=3.1.26.11 306 2e-81 A8FEW7.1 A8FEW7_BACP2 Ribonuclease Z EC=3.1.26.11 305 5e-81 Q65HN6.1 RNZ_BACLD Ribonuclease Z EC=3.1.26.11 304 7e-81 >B3K6R0.1 B3K6R0_9BACI Ribonuclease Z Length = 309 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/309 (58%), Positives = 233/309 (75%) Query: 1 MEIYFLGTNAGVPTLQRNVTSVALRLLEERRSFWMFDCGEGTQHQVLRSPLRLGKLEKLF 60 ME+YFLGTNAGVPTLQRNVTS+ALR+LEERRS W+FDCGEGTQHQ+L+SPL+L KLEK+F Sbjct: 1 MELYFLGTNAGVPTLQRNVTSIALRMLEERRSLWLFDCGEGTQHQILKSPLKLSKLEKVF 60 Query: 61 ITHLHGDHLFGLPGLLSSRGYQGGTGPLTVYGPPGLKAYLDISLSVSQSRIPYPLEIVEH 120 ITH+HGDH+FGLPGLLSSRG QG T PLT+YGPPG+K +++ +LS+SQSR+PY +E++EH Sbjct: 61 ITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPGIKVFIETTLSISQSRVPYTMEVIEH 120 Query: 121 SGGLIFEDDGFKVEAGLLEHRIDSYGYRVTEKDSPGNLNKELLLSFXXXXXXXXXXXXXX 180 +GG++FEDD F VE+ L+HR +SYGYRV EKD PG+L+ + L + Sbjct: 121 TGGVLFEDDNFLVESAKLDHRAESYGYRVVEKDLPGSLDLKRLADYGLKPGPLYGKLKRG 180 Query: 181 QDVTTEEGVLIRAAEVVNAPKRGRIVTVLGDTRPCQGTLPLALDADLIIHEATFGHDLKE 240 + V +G I A++V+ PK+GR+VT+LGDTRPC G LA DADL++HEATF DL E Sbjct: 181 ESVELGDGRWIHASDVLLTPKKGRVVTILGDTRPCAGVEALAKDADLLVHEATFMEDLSE 240 Query: 241 MAHQYHHSTARQAAELARDAGGRELLLTHFSSRYTTXXXXXXXXXXXXXIFPQTLLAEEF 300 +AH+Y+HSTA+QAAE A+ AG + L LTHFSSRY IF T LAE+F Sbjct: 241 LAHEYYHSTAKQAAEAAKRAGVKALFLTHFSSRYKDIDHLQPLLNEAREIFANTRLAEDF 300 Query: 301 CTFPVYRRT 309 +P+ RR+ Sbjct: 301 GLYPIQRRS 309 >C1PES2.1 C1PES2_BACCO Ribonuclease Z EC=3.1.26.11 Length = 305 Score = 311 bits (796), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 152/305 (49%), Positives = 203/305 (66%), Gaps = 1/305 (0%) Query: 1 MEIYFLGTNAGVPTLQRNVTSVALRLLEERRSFWMFDCGEGTQHQVLRSPLRLGKLEKLF 60 MEI FLGT AGVP RNVTS+AL+LLEER + W+FDCGE TQHQ+L + ++ K+EK+F Sbjct: 1 MEILFLGTGAGVPAKARNVTSIALKLLEERNAIWLFDCGEATQHQILHTAIKPRKVEKIF 60 Query: 61 ITHLHGDHLFGLPGLLSSRGYQGGTGPLTVYGPPGLKAYLDISLSVSQSRIPYPLEIVEH 120 ITHLHGDH+FGLPG L SR +QGG GPLTVYGP G+KA++++SL VS++R+ YPLEI+E Sbjct: 61 ITHLHGDHIFGLPGFLGSRSFQGGDGPLTVYGPKGIKAFVEVSLKVSETRLKYPLEIIEI 120 Query: 121 SGGLIFEDDGFKVEAGLLEHRIDSYGYRVTEKDSPGNLNKELLLSFXXXXXXXXXXXXXX 180 G +FEDD F V A L+H I+S+GYR+TEKD PG L+ + L Sbjct: 121 EEGTVFEDDRFTVCALRLDHGIESFGYRITEKDKPGALDADRLKKEGIRPGPVYRLLKEG 180 Query: 181 QDVTTEEGVLIRAAEVVNAPKRGRIVTVLGDTRPCQGTLPLALDADLIIHEATFGHDLKE 240 + VT E+G +I + + K+G+I+ +LGDTRP + + LA +ADL++HEATF + + Sbjct: 181 RTVTLEDGRVISGKDYLGPAKKGKIIAILGDTRPNEAEIRLAANADLLVHEATFNKESGQ 240 Query: 241 MAHQYHHSTARQAAELARDAGGRELLLTHFSSRYTTXXXXXXXXXXXXXIFPQTLLAEEF 300 MAH Y HST AA+ A+ AG + LLLTH S+RY +FP +LL + Sbjct: 241 MAHDYFHSTTADAAQTAKQAGAKRLLLTHISARYGK-EDWPALEQEAQALFPDSLLVHDL 299 Query: 301 CTFPV 305 PV Sbjct: 300 MEVPV 304 >B4ALA7.1 B4ALA7_BACPU Ribonuclease Z EC=3.1.26.11 Length = 309 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 146/307 (47%), Positives = 201/307 (65%) Query: 1 MEIYFLGTNAGVPTLQRNVTSVALRLLEERRSFWMFDCGEGTQHQVLRSPLRLGKLEKLF 60 ME+ FLGT AG+P RNVT AL+LLEER++ W+FDCGE TQHQ+L + ++ K+EK+F Sbjct: 1 MELLFLGTGAGIPAKTRNVTCTALKLLEERKAVWLFDCGEATQHQILHTTIKPRKIEKIF 60 Query: 61 ITHLHGDHLFGLPGLLSSRGYQGGTGPLTVYGPPGLKAYLDISLSVSQSRIPYPLEIVEH 120 ITH+HGDH++GLPGLL SR +QGG LT+YGP G+KA++ +LS +Q+ + YPL I+E Sbjct: 61 ITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVSAALSATQTHLTYPLHIIEI 120 Query: 121 SGGLIFEDDGFKVEAGLLEHRIDSYGYRVTEKDSPGNLNKELLLSFXXXXXXXXXXXXXX 180 G++FEDD F+VEA + H I +YGYRV EKD PG L E L Sbjct: 121 DEGIVFEDDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKEIGVKPGPLYQKLKNG 180 Query: 181 QDVTTEEGVLIRAAEVVNAPKRGRIVTVLGDTRPCQGTLPLALDADLIIHEATFGHDLKE 240 + VT E+G +I + + PK+GRIV GDTR C+ LA DAD+++HEATFG + + Sbjct: 181 ETVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTRLCENITRLAKDADVLVHEATFGKEDAD 240 Query: 241 MAHQYHHSTARQAAELARDAGGRELLLTHFSSRYTTXXXXXXXXXXXXXIFPQTLLAEEF 300 +A+ Y+HST QAA+ A++AG + L+LTH S+RY IFP T A++F Sbjct: 241 LAYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEEALKQLLKEARDIFPLTEAAQDF 300 Query: 301 CTFPVYR 307 +F + R Sbjct: 301 SSFSIDR 307 >A8FEW7.1 A8FEW7_BACP2 Ribonuclease Z EC=3.1.26.11 Length = 309 Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 145/307 (47%), Positives = 201/307 (65%) Query: 1 MEIYFLGTNAGVPTLQRNVTSVALRLLEERRSFWMFDCGEGTQHQVLRSPLRLGKLEKLF 60 ME+ FLGT AG+P RNVT AL+LLEER++ W+FDCGE TQHQ+L + ++ K++K+F Sbjct: 1 MELLFLGTGAGIPAKTRNVTCTALKLLEERKAVWLFDCGEATQHQILHTTIKPRKIDKIF 60 Query: 61 ITHLHGDHLFGLPGLLSSRGYQGGTGPLTVYGPPGLKAYLDISLSVSQSRIPYPLEIVEH 120 ITH+HGDH++GLPGLL SR +QGG LT+YGP G+KA+++ +LS +Q+ + YPL I+E Sbjct: 61 ITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVNATLSATQTHLTYPLHIIEI 120 Query: 121 SGGLIFEDDGFKVEAGLLEHRIDSYGYRVTEKDSPGNLNKELLLSFXXXXXXXXXXXXXX 180 G++FEDD F+VEA + H I +YGYRV EKD PG L E L Sbjct: 121 DEGVVFEDDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKEIGVKPGPLYQKLKNG 180 Query: 181 QDVTTEEGVLIRAAEVVNAPKRGRIVTVLGDTRPCQGTLPLALDADLIIHEATFGHDLKE 240 VT E+G +I + + PK+GRIV GDTR C+ LA DAD+++HEATFG + + Sbjct: 181 DTVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTRLCENITRLAKDADVLVHEATFGKEDAD 240 Query: 241 MAHQYHHSTARQAAELARDAGGRELLLTHFSSRYTTXXXXXXXXXXXXXIFPQTLLAEEF 300 +A+ Y+HST QAA+ A++AG + L+LTH S+RY IFP T A++F Sbjct: 241 LAYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEEALNQLLKEARDIFPLTEAAQDF 300 Query: 301 CTFPVYR 307 +F + R Sbjct: 301 SSFSIDR 307 >Q65HN6.1 RNZ_BACLD Ribonuclease Z EC=3.1.26.11 Length = 307 Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 154/307 (50%), Positives = 199/307 (64%), Gaps = 1/307 (0%) Query: 1 MEIYFLGTNAGVPTLQRNVTSVALRLLEERRSFWMFDCGEGTQHQVLRSPLRLGKLEKLF 60 ME+ FLGT AG+P RNVTSVAL+LLEERRS W+FDCGE TQHQ+L + ++ K+EK+F Sbjct: 1 MELLFLGTGAGIPAKTRNVTSVALKLLEERRSVWLFDCGEATQHQILHTSIKPRKIEKIF 60 Query: 61 ITHLHGDHLFGLPGLLSSRGYQGGTGPLTVYGPPGLKAYLDISLSVSQSRIPYPLEIVEH 120 ITHLHGDH++GLPGL+SSR +QGG GPLTVYGP G+K +L+ +L VS + + YPL I E Sbjct: 61 ITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDVSGTHVTYPLVIKEI 120 Query: 121 SGGLIFEDDGFKVEAGLLEHRIDSYGYRVTEKDSPGNLNKELLLSFXXXXXXXXXXXXXX 180 G +FEDD F V A + H I ++GYRV EKD PG L+ E L Sbjct: 121 GEGTVFEDDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKEIGVSPGPVYQKLKNG 180 Query: 181 QDVTTEEGVLIRAAEVVNAPKRGRIVTVLGDTRPCQGTLPLALDADLIIHEATFGHDLKE 240 + VT E+G I A+ + PK+GRIV GDTRPC+ LA AD++IHEATF +E Sbjct: 181 ETVTLEDGRTIHGADFIGPPKKGRIVAFSGDTRPCENVKRLAEKADVLIHEATFAKGDRE 240 Query: 241 MAHQYHHSTARQAAELARDAGGRELLLTHFSSRYTTXXXXXXXXXXXXXIFPQTLLAEEF 300 +A Y+HST+ QAAE AR+A ++L+LTH S+RY IFP T+ A +F Sbjct: 241 LAGDYYHSTSEQAAETAREACAKKLILTHISARY-QGENVLELVDEAKAIFPDTVAAFDF 299 Query: 301 CTFPVYR 307 + R Sbjct: 300 YEHEIKR 306 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,840,404,436 Number of extensions: 73233581 Number of successful extensions: 173310 Number of sequences better than 1.0e-05: 989 Number of HSP's gapped: 171592 Number of HSP's successfully gapped: 1064 Length of query: 316 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 181 Effective length of database: 1,788,859,178 Effective search space: 323783511218 Effective search space used: 323783511218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)