BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0027.p
         (176 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6R3.1 B3K6R3_9BACI Putative uncharacterized protein                 86   1e-15
C4L0I5.1 C4L0I5_EXISA Putative uncharacterized protein                 78   3e-13
A6CRG8.1 A6CRG8_9BACI Putative uncharacterized protein                 76   1e-12
C0ZAX9.1 C0ZAX9_BREBN Putative uncharacterized protein                 71   4e-11
C2RCN0.1 C2RCN0_BACCE Putative uncharacterized protein                 69   2e-10

>B3K6R3.1 B3K6R3_9BACI Putative uncharacterized protein
          Length = 134

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 3/99 (3%)

Query: 77  EPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEI-VSNNNTESKLEFTGES 135
           EPI VELS +P  + AG+KV+ EA VTQ G PV+DA +V FE+ +     ++K+    + 
Sbjct: 36  EPIIVELSLTPESIKAGEKVLIEAKVTQAGSPVEDANDVEFEVTLEGGGVQAKVPVKHDQ 95

Query: 136 SGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174
              G+YK E T +  G + + SHVTAR QHSMP K+L V
Sbjct: 96  G--GVYKMEKTFEEAGTYRIVSHVTARGQHSMPLKELTV 132


>C4L0I5.1 C4L0I5_EXISA Putative uncharacterized protein
          Length = 249

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 75  SMEPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEIVSNNNTESKLEFTGE 134
           SMEP++ EL+        G+ V     VTQ+GQPVDDA E+ FE+  N   E        
Sbjct: 37  SMEPVEAELTVEAT-AEKGEAVPLSVTVTQDGQPVDDADEIKFEVWKNGAKEESEMIKAS 95

Query: 135 SSGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174
            + DGIY+AE T   E  +TV  HVTAR+ H+MP+  + V
Sbjct: 96  LTKDGIYEAETTFAEEAVYTVQVHVTARSMHTMPTTNVTV 135


>A6CRG8.1 A6CRG8_9BACI Putative uncharacterized protein
          Length = 252

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 8/121 (6%)

Query: 57  GCSGGNGDMNHMHAESNMSMEPIKVELSWSP--LQVAAGQKVVFEALVTQNGQPVDDAKE 114
           GC   N      H+E   ++EP++VEL+  P   ++  G++   +A VTQ  + VDDA E
Sbjct: 20  GCGAQN---EQDHSEEGGTLEPVEVELTTKPGKEELKDGEEFTIQAKVTQGDENVDDANE 76

Query: 115 VLFEIVSNNNTE-SKLEFTGESSGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLV 173
           V FE    +  +  KLE  G+S G+G+Y    T+D  G + V SHVTAR  H+MP  +L 
Sbjct: 77  VEFEFWKKDEEQHEKLE--GQSQGEGVYSISMTVDEPGIYYVISHVTARDMHTMPKLELT 134

Query: 174 V 174
           +
Sbjct: 135 I 135


>C0ZAX9.1 C0ZAX9_BREBN Putative uncharacterized protein
          Length = 258

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 78  PIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEIVSNNNTESKLEFTGESSG 137
           P++   +  P ++ AG  V F   VTQ+GQPVDDAKEV FE   +   E          G
Sbjct: 33  PVEAAFTLEPKELVAGDTVTFSVKVTQDGQPVDDAKEVKFEWWKDGQ-EKHETIPASLQG 91

Query: 138 DGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174
           DG+Y A+ T++  G + V  HVTAR  H+M      V
Sbjct: 92  DGVYTAQQTMNEPGSYFVYYHVTARDFHNMQKTPFTV 128


>C2RCN0.1 C2RCN0_BACCE Putative uncharacterized protein
          Length = 248

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 75  SMEPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEIVSNNNTESKLEFTGE 134
            +E +KV +  +P ++  G+K   +ALVTQ  + V DA +V FEI  + + + ++   G+
Sbjct: 32  KLEAVKVAVQTNPKEIKPGEKTEVQALVTQGKEKVTDADDVKFEIWKDGDEKHEM-LDGK 90

Query: 135 SSGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174
             G G+Y  E T +A+G + + +H  AR  H MP  K+ V
Sbjct: 91  HKGKGVYAVEKTFEADGVYHIIAHTNAREMHVMPEVKVAV 130


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.128    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 905,898,300
Number of extensions: 31284826
Number of successful extensions: 58201
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 58113
Number of HSP's successfully gapped: 101
Length of query: 176
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 50
Effective length of database: 1,873,648,313
Effective search space: 93682415650
Effective search space used: 93682415650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)