BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0024.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6R7.1 B3K6R7_9BACI Peptidoglycan-binding LysM                       84   4e-15

>B3K6R7.1 B3K6R7_9BACI Peptidoglycan-binding LysM
          Length = 123

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)

Query: 1   LIVLLVISGF-TVVGNVFAGSVSSPKQEKRVVVERGDTLWSIALKNKPADMKTAVYIEGI 59
           L  LL+++ F T   +VFAG    P  EK+V+V+ GD+LW IA  +KPADM T VY++ I
Sbjct: 42  LFTLLIVAIFWTGAYSVFAGGTEKPTGEKQVIVQYGDSLWRIASLHKPADMDTRVYLDSI 101

Query: 60  KRTSGLENSNIQAGDVLTLPVY 81
           +R +GL+  +IQAG+VL+LPV+
Sbjct: 102 RRMNGLKGPDIQAGEVLSLPVW 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 466,821,602
Number of extensions: 15385715
Number of successful extensions: 39632
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 39654
Number of HSP's successfully gapped: 1
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)