BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0022.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6R8.1 B3K6R8_9BACI LexA repressor EC=3.4.21.88 385 e-105 B1DMN9.1 B1DMN9_9BACL LexA repressor EC=3.4.21.88 339 1e-91 C0ZES6.1 LEXA_BREBN LexA repressor EC=3.4.21.88 305 1e-81 B4ADH9.1 B4ADH9_BACPU LexA repressor EC=3.4.21.88 299 1e-79 A8FDP7.1 LEXA_BACP2 LexA repressor EC=3.4.21.88 299 1e-79 >B3K6R8.1 B3K6R8_9BACI LexA repressor EC=3.4.21.88 Length = 208 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/208 (88%), Positives = 198/208 (95%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP Sbjct: 1 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGDNK 125 TKPRAIELLGQE+SE+ + F T+ R+PVVGKVTAGVPITA ENIEDYFPLP HYVGD+K Sbjct: 61 TKPRAIELLGQEESESANLFTHTIARVPVVGKVTAGVPITAMENIEDYFPLPQHYVGDDK 120 Query: 126 VFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQ 185 VFMLSV+GDSMI+AGI +GDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKE+DH+RLQ Sbjct: 121 VFMLSVVGDSMIEAGIHSGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKEKDHVRLQ 180 Query: 186 PENPAYEPLRLNRVTILGRVIGLFRDIH 213 PENP YEPLRLN VTILG+VIGLFRD+H Sbjct: 181 PENPTYEPLRLNHVTILGKVIGLFRDVH 208 >B1DMN9.1 B1DMN9_9BACL LexA repressor EC=3.4.21.88 Length = 206 Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 163/208 (78%), Positives = 188/208 (90%), Gaps = 2/208 (0%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 MSKIS+RQ +ILEFI+NEVR KGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP Sbjct: 1 MSKISNRQQSILEFIKNEVRDKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGDNK 125 TKPRAIE+L Q+ + + + V ++P+VGKVTAGVPITATENIE+YFPL H+VGD++ Sbjct: 61 TKPRAIEILDQDGVDGI--ILPAVAQVPIVGKVTAGVPITATENIEEYFPLSAHFVGDDE 118 Query: 126 VFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQ 185 VF+L+V+GDSMI+AGI NGDYVIVRQQQTA+NGDIVVAMTE+DEATVKTFYKE+DHIRLQ Sbjct: 119 VFILNVMGDSMIEAGIHNGDYVIVRQQQTANNGDIVVAMTEDDEATVKTFYKEKDHIRLQ 178 Query: 186 PENPAYEPLRLNRVTILGRVIGLFRDIH 213 PEN EP+RLN VTILG+V+GLFRD H Sbjct: 179 PENSTMEPIRLNNVTILGKVVGLFRDFH 206 >C0ZES6.1 LEXA_BREBN LexA repressor EC=3.4.21.88 Length = 207 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 152/208 (73%), Positives = 174/208 (83%), Gaps = 1/208 (0%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 MSK+SSRQ AI+EFIR EVR KGYPPSVREIGEAVGLASSSTVHGHL RLEKKGLIRRDP Sbjct: 1 MSKLSSRQQAIIEFIRKEVRDKGYPPSVREIGEAVGLASSSTVHGHLARLEKKGLIRRDP 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGDNK 125 TKPRAIELL ED F +V R+PV+GKVTAG PITA E++E+YFPLP + V +K Sbjct: 61 TKPRAIELLSDEDRFQ-DNFEDSVVRVPVIGKVTAGQPITAIEDVEEYFPLPDNIVTSDK 119 Query: 126 VFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQ 185 V+ML V G+SMIDAGI++GDYVIVRQQ A+NGDIVVAMTEEDEATVK F+KE++H RLQ Sbjct: 120 VYMLRVSGNSMIDAGILDGDYVIVRQQHVANNGDIVVAMTEEDEATVKRFFKEKNHFRLQ 179 Query: 186 PENPAYEPLRLNRVTILGRVIGLFRDIH 213 PEN EP+ L VTILG+VIG++R IH Sbjct: 180 PENATMEPIILEHVTILGKVIGVYRLIH 207 >B4ADH9.1 B4ADH9_BACPU LexA repressor EC=3.4.21.88 Length = 206 Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/209 (70%), Positives = 173/209 (82%), Gaps = 4/209 (1%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M+K+S RQL IL FI+ EV+SKGYPPSVREIGEAVGLASSSTVHGHL RLE KGLIRRDP Sbjct: 1 MTKLSKRQLDILTFIKEEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVG-DN 124 TKPRAIE+L D E ++ V +PV+GKVTAG+PITA EN+E+YFPLP + D Sbjct: 61 TKPRAIEVL---DEEEMNIPKSAVMNVPVIGKVTAGLPITAVENVEEYFPLPETFAAPDE 117 Query: 125 KVFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRL 184 +VFML ++G+SMIDAGI++ DYVIVRQQ TA+NGDIVVAMTEEDEATVK FYKE H RL Sbjct: 118 QVFMLEIMGESMIDAGILDKDYVIVRQQSTANNGDIVVAMTEEDEATVKRFYKEDTHFRL 177 Query: 185 QPENPAYEPLRLNRVTILGRVIGLFRDIH 213 QPENP+ EP+ L V+ILG+VIG+FR+IH Sbjct: 178 QPENPSMEPIILQNVSILGKVIGVFRNIH 206 >A8FDP7.1 LEXA_BACP2 LexA repressor EC=3.4.21.88 Length = 206 Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/209 (70%), Positives = 173/209 (82%), Gaps = 4/209 (1%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M+K+S RQL IL FI+ EV+SKGYPPSVREIGEAVGLASSSTVHGHL RLE KGLIRRDP Sbjct: 1 MTKLSKRQLDILTFIKEEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVG-DN 124 TKPRAIE+L D E ++ V +PV+GKVTAG+PITA EN+E+YFPLP + D Sbjct: 61 TKPRAIEVL---DEEELNIPKSAVMNVPVIGKVTAGLPITAVENVEEYFPLPETFAAPDE 117 Query: 125 KVFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRL 184 +VFML ++G+SMIDAGI++ DYVIVRQQ TA+NGDIVVAMTEEDEATVK FYKE H RL Sbjct: 118 QVFMLEIMGESMIDAGILDKDYVIVRQQSTANNGDIVVAMTEEDEATVKRFYKEDTHFRL 177 Query: 185 QPENPAYEPLRLNRVTILGRVIGLFRDIH 213 QPENP+ EP+ L V+ILG+VIG+FR+IH Sbjct: 178 QPENPSMEPIILQNVSILGKVIGVFRNIH 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,697,162 Number of extensions: 51111177 Number of successful extensions: 146450 Number of sequences better than 1.0e-05: 1439 Number of HSP's gapped: 144332 Number of HSP's successfully gapped: 1468 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)