BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0015.p (442 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DMN7.1 B1DMN7_9BACL Glutamine synthetase EC=6.3.1.2 838 0.0 B3K6S2.1 B3K6S2_9BACI Glutamine synthetase EC=6.3.1.2 835 0.0 C0ZEX1.1 C0ZEX1_BREBN Glutamine synthetase EC=6.3.1.2 721 0.0 B1YMH6.1 B1YMH6_EXIS2 Glutamine synthetase EC=6.3.1.2 709 0.0 A7GR61.1 A7GR61_BACCN Glutamine synthetase EC=6.3.1.2 709 0.0 >B1DMN7.1 B1DMN7_9BACL Glutamine synthetase EC=6.3.1.2 Length = 442 Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/442 (88%), Positives = 422/442 (95%) Query: 1 VSFSKEDILRIAKDENVRFIRLQFTDLLGTIKNVEIPVSQLEKALDNKMMFDGSSIEGYV 60 +S++KEDI RIA+++NVRFIRLQFTDLLGTIKNVEIPVSQL+KALDNKMMFDGSSIEGYV Sbjct: 1 MSYTKEDIKRIAEEQNVRFIRLQFTDLLGTIKNVEIPVSQLDKALDNKMMFDGSSIEGYV 60 Query: 61 RIEESDMYLYPDLSTWVIFPWVTDSRVARLICDVYMPDGTPFAGDPRGILKRCLQEAEEM 120 RIEESDMYLYPDL TWV+FPWV RVARLICD+YMPDGTPFAGDPRGILKR LQEAEEM Sbjct: 61 RIEESDMYLYPDLDTWVVFPWVAQDRVARLICDIYMPDGTPFAGDPRGILKRALQEAEEM 120 Query: 121 GYTAMNVGPEPEFFLFKTDERGNPTTELNDQGGYFDLAPMDLGENCRREIVLTLEEMGFE 180 G+TAMNVGPEPEFFLFKTDERG PTTELNDQGGYFDLAPMD+GENCRREIVLTLEEMGFE Sbjct: 121 GFTAMNVGPEPEFFLFKTDERGEPTTELNDQGGYFDLAPMDMGENCRREIVLTLEEMGFE 180 Query: 181 IEASHHEVASGQHEIDFKYADAIKAADQIQTFKLVVKTVARQHGLHATFMPKPLFGMNGS 240 IEASHHEVA GQHEIDFKYADAIKAADQIQTFKLVVKT+ARQHGLHATFMPKPLFG+NGS Sbjct: 181 IEASHHEVAPGQHEIDFKYADAIKAADQIQTFKLVVKTIARQHGLHATFMPKPLFGVNGS 240 Query: 241 GMHAHQSLFKGNENVFYDESDTLGLSKTARYYMAGILKHARAFAAITNPTVNSYKRLVPG 300 GMH HQSLF+G+ NVFY+E D LGLS+TARYYMAGIL+HARA AAITNPT+NSYKR+VPG Sbjct: 241 GMHCHQSLFQGSTNVFYEEKDRLGLSQTARYYMAGILEHARAMAAITNPTINSYKRMVPG 300 Query: 301 YEAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGIKRQL 360 YEAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGIK + Sbjct: 301 YEAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGIKNKT 360 Query: 361 DLPAPIDRNIYVMSEEERIEEGIPSLPSDLKEALGEMIRSHVITEALGEHALAHFYELKE 420 LPAP+DRNIY+M+EEER+E G+PSLPSDLKEAL EM+RS VI +ALGEHALAHFYELKE Sbjct: 361 ALPAPVDRNIYIMTEEERLESGVPSLPSDLKEALDEMLRSDVICDALGEHALAHFYELKE 420 Query: 421 IEWDIYRTQVHEWERDQYMTLY 442 IEWD+Y+TQVH+WERDQY+TLY Sbjct: 421 IEWDMYKTQVHQWERDQYLTLY 442 >B3K6S2.1 B3K6S2_9BACI Glutamine synthetase EC=6.3.1.2 Length = 442 Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/442 (89%), Positives = 424/442 (95%) Query: 1 VSFSKEDILRIAKDENVRFIRLQFTDLLGTIKNVEIPVSQLEKALDNKMMFDGSSIEGYV 60 +S+++EDILRIAK+ENVRFIRLQFTDLLGTIKNVEIPVSQL KALDNKMMFDGSSIEGYV Sbjct: 1 MSYTREDILRIAKEENVRFIRLQFTDLLGTIKNVEIPVSQLPKALDNKMMFDGSSIEGYV 60 Query: 61 RIEESDMYLYPDLSTWVIFPWVTDSRVARLICDVYMPDGTPFAGDPRGILKRCLQEAEEM 120 RIEESDMYLYPDL T++IFPWV++ RVARLICDVYMPDGTPFAGDPRGILKR L+EAEEM Sbjct: 61 RIEESDMYLYPDLDTFMIFPWVSEDRVARLICDVYMPDGTPFAGDPRGILKRALKEAEEM 120 Query: 121 GYTAMNVGPEPEFFLFKTDERGNPTTELNDQGGYFDLAPMDLGENCRREIVLTLEEMGFE 180 G+T+MNVGPEPEFFLFKTDE+GNPT ELNDQGGYFDLAP DLGENCRR+IVLTLEEMGFE Sbjct: 121 GFTSMNVGPEPEFFLFKTDEKGNPTMELNDQGGYFDLAPTDLGENCRRDIVLTLEEMGFE 180 Query: 181 IEASHHEVASGQHEIDFKYADAIKAADQIQTFKLVVKTVARQHGLHATFMPKPLFGMNGS 240 IEASHHEVA GQHEIDFKYADAIKAADQIQTFKLVVKT+ARQHGL ATFMPKPLFG+NGS Sbjct: 181 IEASHHEVAPGQHEIDFKYADAIKAADQIQTFKLVVKTIARQHGLIATFMPKPLFGVNGS 240 Query: 241 GMHAHQSLFKGNENVFYDESDTLGLSKTARYYMAGILKHARAFAAITNPTVNSYKRLVPG 300 GMH +QSLFKG EN F DESD LGLS TAR YMAGILKHARAFAAITNPTVNSYKRLVPG Sbjct: 241 GMHCNQSLFKGGENAFVDESDELGLSVTARNYMAGILKHARAFAAITNPTVNSYKRLVPG 300 Query: 301 YEAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGIKRQL 360 YEAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDG+KR+L Sbjct: 301 YEAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGVKREL 360 Query: 361 DLPAPIDRNIYVMSEEERIEEGIPSLPSDLKEALGEMIRSHVITEALGEHALAHFYELKE 420 LPAPIDRNIYVM+EEERIEEGIPSLP++LKEAL E+IRS VI++ALG+HALAHFYELKE Sbjct: 361 SLPAPIDRNIYVMTEEERIEEGIPSLPANLKEALNELIRSEVISDALGDHALAHFYELKE 420 Query: 421 IEWDIYRTQVHEWERDQYMTLY 442 IEWD+YRTQVH+WERDQY+T+Y Sbjct: 421 IEWDMYRTQVHQWERDQYITMY 442 >C0ZEX1.1 C0ZEX1_BREBN Glutamine synthetase EC=6.3.1.2 Length = 444 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/441 (75%), Positives = 392/441 (88%), Gaps = 1/441 (0%) Query: 3 FSKEDILRIAKDENVRFIRLQFTDLLGTIKNVEIPVSQLEKALDNKMMFDGSSIEGYVRI 62 F++EDI+R+AK+E+VR+IRLQFTDL+G IKNVEIP+SQL KALD KMMFDGSSIEG+VRI Sbjct: 4 FTREDIMRMAKEEDVRYIRLQFTDLMGIIKNVEIPLSQLPKALDGKMMFDGSSIEGFVRI 63 Query: 63 EESDMYLYPDLSTWVIFPWVTD-SRVARLICDVYMPDGTPFAGDPRGILKRCLQEAEEMG 121 EESDMYL PDL TWV+FPW + ++ARLICD++MPDG+PF GDPR ILKR L+EAEEMG Sbjct: 64 EESDMYLVPDLDTWVVFPWGNEFGKIARLICDIHMPDGSPFEGDPRYILKRALKEAEEMG 123 Query: 122 YTAMNVGPEPEFFLFKTDERGNPTTELNDQGGYFDLAPMDLGENCRREIVLTLEEMGFEI 181 +TA NVGPEPEFFLFK D +G PT +LNDQGGYFD AP+D GENCRR+IVLTLE+MGFE+ Sbjct: 124 FTAFNVGPEPEFFLFKLDAKGEPTLDLNDQGGYFDFAPLDSGENCRRDIVLTLEKMGFEV 183 Query: 182 EASHHEVASGQHEIDFKYADAIKAADQIQTFKLVVKTVARQHGLHATFMPKPLFGMNGSG 241 EASHHEVA GQHEIDFKYA+A++AADQI TFKLVVKT+A++HGLHATFMPKPL+G+ GSG Sbjct: 184 EASHHEVAPGQHEIDFKYANALQAADQILTFKLVVKTIAQKHGLHATFMPKPLYGVAGSG 243 Query: 242 MHAHQSLFKGNENVFYDESDTLGLSKTARYYMAGILKHARAFAAITNPTVNSYKRLVPGY 301 MHA+QSLF+G EN FYDESD +GLS+TA++Y+AGIL+HAR+F AITNP VNSYKRLVPGY Sbjct: 244 MHANQSLFRGKENAFYDESDVMGLSQTAKHYLAGILQHARSFTAITNPLVNSYKRLVPGY 303 Query: 302 EAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGIKRQLD 361 EAPCYVAWSA NRSP+IRIPASRGLSTRIEVR+PDPA NPYLALAVMLKAGLDGIK +L Sbjct: 304 EAPCYVAWSAKNRSPLIRIPASRGLSTRIEVRSPDPATNPYLALAVMLKAGLDGIKNKLT 363 Query: 362 LPAPIDRNIYVMSEEERIEEGIPSLPSDLKEALGEMIRSHVITEALGEHALAHFYELKEI 421 PA IDRNIYVM+E++R GI +LP+ LKEA+ + VI EALGEHAL HF E KEI Sbjct: 364 PPAAIDRNIYVMTEQDREANGIENLPATLKEAIECLKADPVICEALGEHALVHFIEAKEI 423 Query: 422 EWDIYRTQVHEWERDQYMTLY 442 EWD++RT+VH+WER+QYMT Y Sbjct: 424 EWDMFRTRVHDWEREQYMTAY 444 >B1YMH6.1 B1YMH6_EXIS2 Glutamine synthetase EC=6.3.1.2 Length = 448 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/444 (75%), Positives = 378/444 (85%), Gaps = 3/444 (0%) Query: 2 SFSKEDILRIAKDENVRFIRLQFTDLLGTIKNVEIPVSQLEKALDNKMMFDGSSIEGYVR 61 + ++EDI++IAK E+VRFIRLQFTD+LGTIKNVEIPVSQLEKALDNKMMFDGSSIEG+VR Sbjct: 5 NITREDIMKIAKAEDVRFIRLQFTDILGTIKNVEIPVSQLEKALDNKMMFDGSSIEGFVR 64 Query: 62 IEESDMYLYPDLSTWVIFPWVTDS--RVARLICDVYMPDGTPFAGDPRGILKRCLQEAEE 119 IEESDMYL+PDL+TWV+FPW D +VARLICD+Y PDGTPFAGDPRG LKR L+E EE Sbjct: 65 IEESDMYLFPDLNTWVVFPWTEDGTGKVARLICDIYNPDGTPFAGDPRGQLKRVLKEMEE 124 Query: 120 MGYTAMNVGPEPEFFLFKTDERGNPTTELNDQGGYFDLAPMDLGENCRREIVLTLEEMGF 179 +G+T+ NVGPEPEFFLFK D G PT ELNDQGGYFDLAP+DLGENCR+EIV+ LE MGF Sbjct: 125 LGFTSFNVGPEPEFFLFKKDANGRPTLELNDQGGYFDLAPVDLGENCRKEIVIELENMGF 184 Query: 180 EIEASHHEVASGQHEIDFKYADAIKAADQIQTFKLVVKTVARQHGLHATFMPKPLFGMNG 239 EIEASHHEVA GQHEIDFKYADAI AD IQTFKLVVKT+A +H LHATFMPKPL+G+NG Sbjct: 185 EIEASHHEVAPGQHEIDFKYADAITTADNIQTFKLVVKTIAAKHNLHATFMPKPLYGVNG 244 Query: 240 SGMHAHQSLFKGNENVFYDESDT-LGLSKTARYYMAGILKHARAFAAITNPTVNSYKRLV 298 SGMHA+ SLFKGNENVF+DE ++ + LS AR + AGILKHARAF A+ NPTVNSYKRLV Sbjct: 245 SGMHANMSLFKGNENVFFDEENSNMQLSDDARAFTAGILKHARAFTAVCNPTVNSYKRLV 304 Query: 299 PGYEAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGIKR 358 PGYEAPCYVAWSA NRSP++R+PA+RGLSTRIEVR+ DPAANPYLALA +L +GLDGIK Sbjct: 305 PGYEAPCYVAWSARNRSPLVRVPAARGLSTRIEVRSVDPAANPYLALATLLASGLDGIKN 364 Query: 359 QLDLPAPIDRNIYVMSEEERIEEGIPSLPSDLKEALGEMIRSHVITEALGEHALAHFYEL 418 L PAPIDRNIYVM + ER+ GI LPS L AL + V+ ALGEH HF EL Sbjct: 365 NLQAPAPIDRNIYVMDKPERVANGIDDLPSTLSHALEVLKADDVVMHALGEHIAEHFVEL 424 Query: 419 KEIEWDIYRTQVHEWERDQYMTLY 442 KEIEWD++RTQV EWERDQYM L+ Sbjct: 425 KEIEWDMFRTQVTEWERDQYMVLF 448 >A7GR61.1 A7GR61_BACCN Glutamine synthetase EC=6.3.1.2 Length = 444 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/441 (75%), Positives = 379/441 (85%), Gaps = 1/441 (0%) Query: 3 FSKEDILRIAKDENVRFIRLQFTDLLGTIKNVEIPVSQLEKALDNKMMFDGSSIEGYVRI 62 ++KEDI R+AK+ENV++IRLQFTDLLGTIKNVEIPVSQL KALDNKMMFDGSSIEG+VRI Sbjct: 4 YTKEDIFRLAKEENVKYIRLQFTDLLGTIKNVEIPVSQLTKALDNKMMFDGSSIEGFVRI 63 Query: 63 EESDMYLYPDLSTWVIFPWVTDS-RVARLICDVYMPDGTPFAGDPRGILKRCLQEAEEMG 121 EESDMYLYPDL TWVIFPW + +VARLICD+Y DGTPF GDPR LKR L+E E +G Sbjct: 64 EESDMYLYPDLDTWVIFPWTAEKGKVARLICDIYNADGTPFEGDPRNNLKRVLKEMEALG 123 Query: 122 YTAMNVGPEPEFFLFKTDERGNPTTELNDQGGYFDLAPMDLGENCRREIVLTLEEMGFEI 181 +T N+GPEPEFFLFK DE+GNPT ELND GGYFDLAPMDLGENCRR+IVL LEEMGFEI Sbjct: 124 FTDFNLGPEPEFFLFKVDEKGNPTLELNDNGGYFDLAPMDLGENCRRDIVLELEEMGFEI 183 Query: 182 EASHHEVASGQHEIDFKYADAIKAADQIQTFKLVVKTVARQHGLHATFMPKPLFGMNGSG 241 EASHHEVA GQHEIDFKYA AI++ D IQTFKLVVKT+AR+HGLHATFMPKPLFG+NGSG Sbjct: 184 EASHHEVAPGQHEIDFKYASAIRSCDDIQTFKLVVKTIARKHGLHATFMPKPLFGVNGSG 243 Query: 242 MHAHQSLFKGNENVFYDESDTLGLSKTARYYMAGILKHARAFAAITNPTVNSYKRLVPGY 301 MH + SLFK ENVFYD++ L LS AR+++AGILKHA AF A+ NPTVNSYKRLVPGY Sbjct: 244 MHCNLSLFKNGENVFYDQNGDLQLSDDARHFIAGILKHAPAFTAVANPTVNSYKRLVPGY 303 Query: 302 EAPCYVAWSASNRSPMIRIPASRGLSTRIEVRNPDPAANPYLALAVMLKAGLDGIKRQLD 361 EAPCYVAWSA NRSP++RIPASRG+STR+EVR+ DPAANPYL +A +L AGLDGIK +L Sbjct: 304 EAPCYVAWSAQNRSPLVRIPASRGISTRVEVRSVDPAANPYLVMATLLAAGLDGIKNKLT 363 Query: 362 LPAPIDRNIYVMSEEERIEEGIPSLPSDLKEALGEMIRSHVITEALGEHALAHFYELKEI 421 PA +DRNIYVM++EER E GI LP+ L +AL + + VI +ALGEH L HF E KEI Sbjct: 364 PPAAVDRNIYVMTKEEREEAGIVDLPATLAQALLTLQSNEVICKALGEHLLEHFIEAKEI 423 Query: 422 EWDIYRTQVHEWERDQYMTLY 442 EWD++RTQVH+WERDQYM+LY Sbjct: 424 EWDMFRTQVHQWERDQYMSLY 444 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,757,430,679 Number of extensions: 120724817 Number of successful extensions: 283360 Number of sequences better than 1.0e-05: 3566 Number of HSP's gapped: 271827 Number of HSP's successfully gapped: 3625 Length of query: 442 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 303 Effective length of database: 1,751,175,118 Effective search space: 530606060754 Effective search space used: 530606060754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)