BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0014.p (136 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6S3.1 B3K6S3_9BACI Regulatory protein MerR 244 2e-63 B1DMN6.1 B1DMN6_9BACL Transcriptional regulator, MerR family 238 9e-62 C0ZEX2.1 C0ZEX2_BREBN Transcriptional regulator GlnR 178 1e-43 Q0E5H6.1 Q0E5H6_SPOHA Transcriptional regulator 160 4e-38 B7GI92.1 B7GI92_ANOFW Transcriptional regulator, MerR family 156 5e-37 >B3K6S3.1 B3K6S3_9BACI Regulatory protein MerR Length = 128 Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/128 (92%), Positives = 125/128 (97%) Query: 9 MALFPIGIVMKLTDLSARQIRYYEQHSLIVPARTSGNQRLFSFNDVERLLEIKALIEKGV 68 MALFPIGIVMKLTDLSARQIRYYEQH+LIVPARTSGNQRLFSFNDVERLLEIKALIEKGV Sbjct: 1 MALFPIGIVMKLTDLSARQIRYYEQHNLIVPARTSGNQRLFSFNDVERLLEIKALIEKGV 60 Query: 69 NIAGIKQVMNPVSKESEEATVITPDTEVRRRELSDSQLHRLLKQELVSGKRPGQVSLIQG 128 NIAGIKQVMNPV+KESEEATVITPDTE RRRE+S+SQL RLLKQEL++ KRPGQVSLIQG Sbjct: 61 NIAGIKQVMNPVTKESEEATVITPDTENRRREMSESQLRRLLKQELITAKRPGQVSLIQG 120 Query: 129 ELSRFFNK 136 ELSRFFNK Sbjct: 121 ELSRFFNK 128 >B1DMN6.1 B1DMN6_9BACL Transcriptional regulator, MerR family Length = 136 Score = 238 bits (608), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 114/136 (83%), Positives = 129/136 (94%), Gaps = 1/136 (0%) Query: 1 MGDEIRRNMALFPIGIVMKLTDLSARQIRYYEQHSLIVPARTSGNQRLFSFNDVERLLEI 60 MGD+IRRNMALFPIGIVMKLTDL+ARQIRYYEQH LIVPART+GNQRLFSFNDVERLLEI Sbjct: 1 MGDDIRRNMALFPIGIVMKLTDLTARQIRYYEQHELIVPARTAGNQRLFSFNDVERLLEI 60 Query: 61 KALIEKGVNIAGIKQVMNPVSKESEEATVITPDTEVRRRELSDSQLHRLLKQELVSGKRP 120 KALIEKGVNIAGIKQVMNPVSKES++AT+++ +EV+R+ELSD+QLHRLLKQ+L+ KRP Sbjct: 61 KALIEKGVNIAGIKQVMNPVSKESDDATIVSEQSEVKRKELSDAQLHRLLKQQLLE-KRP 119 Query: 121 GQVSLIQGELSRFFNK 136 GQ SLIQG+LSRF NK Sbjct: 120 GQASLIQGQLSRFLNK 135 >C0ZEX2.1 C0ZEX2_BREBN Transcriptional regulator GlnR Length = 136 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 114/137 (83%), Gaps = 3/137 (2%) Query: 1 MGDEIRRNMALFPIGIVMKLTDLSARQIRYYEQHSLIVPARTSGNQRLFSFNDVERLLEI 60 M D++RRNMALFPIGIVMKLTDL+ARQIRYYEQ+ LI PART G QRLFSFNDV+RLLEI Sbjct: 1 MSDDLRRNMALFPIGIVMKLTDLTARQIRYYEQNDLIQPARTEGKQRLFSFNDVDRLLEI 60 Query: 61 KALIEKGVNIAGIKQVMNPVSKESEEATVITPDTEVRRRELSDSQLHRLLKQELV--SGK 118 KALIEKG+NIAGIKQV+ + + + E T IT +E +R+++SD +LH+LL+Q+++ Sbjct: 61 KALIEKGLNIAGIKQVLQ-MQEPAMEQTEITTTSEEKRKDMSDKELHQLLRQQIMYRDAT 119 Query: 119 RPGQVSLIQGELSRFFN 135 R G+ +LI+GELSRFF+ Sbjct: 120 RHGEGALIRGELSRFFH 136 >Q0E5H6.1 Q0E5H6_SPOHA Transcriptional regulator Length = 134 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/135 (60%), Positives = 102/135 (75%), Gaps = 1/135 (0%) Query: 1 MGDEIRRNMALFPIGIVMKLTDLSARQIRYYEQHSLIVPARTSGNQRLFSFNDVERLLEI 60 M DEIRR+M LFP+GIV LTDLSARQIRYYEQH L+ PAR+ GN+RLFSFNDV+RLLEI Sbjct: 1 MSDEIRRSMPLFPMGIVQSLTDLSARQIRYYEQHQLVQPARSEGNRRLFSFNDVDRLLEI 60 Query: 61 KALIEKGVNIAGIKQVMNPVSKESEEATVITPDTEVRRRELSDSQLHRLLKQELVSGKRP 120 K LIE+GVN+AGIKQV+ + EA EV EL++ +L R+L+QEL + R Sbjct: 61 KDLIEQGVNMAGIKQVLKLTDQPENEAYDEKRVEEV-HSELTEKELRRMLQQELFTAGRQ 119 Query: 121 GQVSLIQGELSRFFN 135 G++ + QGELSRFF+ Sbjct: 120 GKLGIRQGELSRFFH 134 >B7GI92.1 B7GI92_ANOFW Transcriptional regulator, MerR family Length = 134 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/136 (57%), Positives = 105/136 (77%), Gaps = 3/136 (2%) Query: 1 MGDEIRRNMALFPIGIVMKLTDLSARQIRYYEQHSLIVPARTSGNQRLFSFNDVERLLEI 60 M IRR+M LFPIGIVM+LTDLSARQIRYYE+H L+ PART GN+RLFSFNDV+RLLEI Sbjct: 1 MNSHIRRSMPLFPIGIVMQLTDLSARQIRYYEEHGLVSPARTEGNRRLFSFNDVDRLLEI 60 Query: 61 KALIEKGVNIAGIKQVMNPVSKESEEATVITP-DTEVRRRELSDSQLHRLLKQELVSGKR 119 K LIE+GVN+AGIKQ+ S++ + A P +V +++LS+++L +LL+ EL+ R Sbjct: 61 KDLIEQGVNLAGIKQIF--ASRQQQHAETTPPVAPKVMKQDLSEAELRKLLRAELMQAGR 118 Query: 120 PGQVSLIQGELSRFFN 135 + SL QG+++RFF+ Sbjct: 119 FNRASLRQGDIARFFH 134 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 713,055,926 Number of extensions: 24581141 Number of successful extensions: 79731 Number of sequences better than 1.0e-05: 405 Number of HSP's gapped: 80492 Number of HSP's successfully gapped: 413 Length of query: 136 Length of database: 3,060,696,203 Length adjustment: 100 Effective length of query: 36 Effective length of database: 2,118,594,703 Effective search space: 76269409308 Effective search space used: 76269409308 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)