BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0011.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6S7.1 B3K6S7_9BACI AAA ATPase central domain protein               192   6e-48
B1DMN3.1 B1DMN3_9BACL AAA ATPase central domain protein               184   2e-45
Q5L0D7.1 Q5L0D7_GEOKA Spore formation protein                         132   1e-29
C3J6N8.1 C3J6N8_9BACI Stage V sporulation protein K                   132   1e-29
B7YE43.1 B7YE43_9BACI Stage V sporulation protein K                   132   1e-29

>B3K6S7.1 B3K6S7_9BACI AAA ATPase central domain protein
          Length = 327

 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 106/122 (86%)

Query: 1   VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60
           +LILAGYS EID+F+ +NPGL SRFPIQ++FPDY +DQL+QI+ELMAKERDYILMPQ++ 
Sbjct: 201 ILILAGYSDEIDFFMDTNPGLHSRFPIQMDFPDYNLDQLIQISELMAKERDYILMPQSLN 260

Query: 61  KLKQHLLLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGKQELMTLRTEDF 120
           KLK HL LEK   LHAFSNARYVRN IEK++R Q+VRLLNQY + +PGK ELMTLR EDF
Sbjct: 261 KLKDHLQLEKEHGLHAFSNARYVRNVIEKSIRNQSVRLLNQYVTGNPGKLELMTLRPEDF 320

Query: 121 KL 122
           KL
Sbjct: 321 KL 322


>B1DMN3.1 B1DMN3_9BACL AAA ATPase central domain protein
          Length = 326

 Score =  184 bits (468), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 106/121 (87%)

Query: 1   VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60
           VLILAGY +EID+FL++NPGLPSRFPIQ++FPDY+IDQL+QI+ELMAKERDY LMPQ+I 
Sbjct: 202 VLILAGYPAEIDHFLLTNPGLPSRFPIQIDFPDYSIDQLIQISELMAKERDYNLMPQSIF 261

Query: 61  KLKQHLLLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGKQELMTLRTEDF 120
           KL+Q+L+ EK   + +FSNARYVRN IEK++R QAVRLLNQY ++ P KQELM ++ EDF
Sbjct: 262 KLRQYLIQEKMSDIFSFSNARYVRNIIEKSIRYQAVRLLNQYSNSIPPKQELMAIKPEDF 321

Query: 121 K 121
           K
Sbjct: 322 K 322


>Q5L0D7.1 Q5L0D7_GEOKA Spore formation protein
          Length = 310

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 6/122 (4%)

Query: 1   VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60
           V+ILAGY  E+DYFL  NPGLPSRFP+ +EFPDYT+++L+QIA+ M +ER+Y + P+A  
Sbjct: 189 VVILAGYPKEMDYFLSLNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPEAER 248

Query: 61  KLKQHL--LLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGKQELMTLRTE 118
           KL  HL   LE T  L  FSN RYVRN IEKA+R QAVRLL++   +   K+ELMT+R  
Sbjct: 249 KLYIHLEGTLEATGRL-KFSNGRYVRNLIEKAIRKQAVRLLHEGRYD---KKELMTIRDR 304

Query: 119 DF 120
           D 
Sbjct: 305 DL 306


>C3J6N8.1 C3J6N8_9BACI Stage V sporulation protein K
          Length = 310

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 6/122 (4%)

Query: 1   VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60
           V+ILAGY  E+DYFL  NPGLPSRFP+ +EFPDYT+++L+QIA+ M +ER+Y + P+A  
Sbjct: 189 VVILAGYPKEMDYFLSLNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPEAER 248

Query: 61  KLKQHL--LLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGKQELMTLRTE 118
           KL  HL   LE T  L  FSN RYVRN IEKA+R QAVRLL++   +   K+ELMT+R  
Sbjct: 249 KLYIHLEGTLEATGRL-KFSNGRYVRNLIEKAIRKQAVRLLHEGRYD---KKELMTIRDR 304

Query: 119 DF 120
           D 
Sbjct: 305 DL 306


>B7YE43.1 B7YE43_9BACI Stage V sporulation protein K
          Length = 310

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 6/122 (4%)

Query: 1   VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60
           V+ILAGY  E+DYFL  NPGLPSRFP+ +EFPDYT+++L+QIA+ M +ER+Y + P+A  
Sbjct: 189 VVILAGYPKEMDYFLSLNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPEAER 248

Query: 61  KLKQHL--LLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGKQELMTLRTE 118
           KL  HL   LE T  L  FSN RYVRN IEKA+R QAVRLL++   +   K+ELMT+R  
Sbjct: 249 KLYIHLEGTLEATGRL-KFSNGRYVRNLIEKAIRKQAVRLLHEGRYD---KKELMTIRDR 304

Query: 119 DF 120
           D 
Sbjct: 305 DL 306


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 634,838,170
Number of extensions: 20432698
Number of successful extensions: 56640
Number of sequences better than 1.0e-05: 400
Number of HSP's gapped: 56290
Number of HSP's successfully gapped: 450
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)