BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0010.p (211 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6S7.1 B3K6S7_9BACI AAA ATPase central domain protein 253 6e-66 B1DMN3.1 B1DMN3_9BACL AAA ATPase central domain protein 210 7e-53 A6CS62.1 A6CS62_9BACI SpoVK 178 2e-43 C1PFY8.1 C1PFY8_BACCO Stage V sporulation protein K 175 2e-42 Q65J83.1 Q65J83_BACLD SpoVK 174 6e-42 >B3K6S7.1 B3K6S7_9BACI AAA ATPase central domain protein Length = 327 Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 125/172 (72%), Positives = 141/172 (81%), Gaps = 1/172 (0%) Query: 4 VNGRVAAASGREEGRPSRQINIVLRNQDTPXXXXXXXXXXXXXXPPKNNGHSEWFQELNR 63 +NGRV AA+GR EGRPSRQIN+VLR+ + P P + HS FQE+ + Sbjct: 1 MNGRVTAANGRSEGRPSRQINVVLRSAEPPLISSAVPEREPAPSPNPVSQHS-LFQEIQK 59 Query: 64 ELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVA 123 ELD LVGLE IK+LVFEIYALLQ+A+MRS+AGL SGG YHM+FKGNPGTGKTTVARIVA Sbjct: 60 ELDQLVGLEQIKDLVFEIYALLQVAQMRSEAGLLSGGHVYHMIFKGNPGTGKTTVARIVA 119 Query: 124 KLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 KLFQ+MGVL KGHL+EVERADLVGEYIGHTAQKTR+LVKKALGGILFIDEAY Sbjct: 120 KLFQKMGVLNKGHLVEVERADLVGEYIGHTAQKTRELVKKALGGILFIDEAY 171 >B1DMN3.1 B1DMN3_9BACL AAA ATPase central domain protein Length = 326 Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 101/166 (60%), Positives = 128/166 (77%), Gaps = 2/166 (1%) Query: 12 SGREEG-RPSRQINIVLRNQDTPXXXXXXXXXXXXXXPP-KNNGHSEWFQELNRELDALV 69 SG G RPSRQIN+VLR+Q+ P K + F ++ +EL+ +V Sbjct: 7 SGSNNGARPSRQINVVLRSQEPVQMTASAPVVDNEPLPAVKPLPPGDHFADIQKELEPMV 66 Query: 70 GLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVAKLFQRM 129 G++N+K L++E+YALL I +MRS+AGL+ G YHM+FKGNPGTGKTT+ARIVAKLFQ+M Sbjct: 67 GMDNVKALIYEVYALLYITRMRSEAGLSGGSHVYHMIFKGNPGTGKTTIARIVAKLFQKM 126 Query: 130 GVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 GVL+KGHLIEVERADLVGEYIGHTAQKTRD+V+KA+GG+LF+DEAY Sbjct: 127 GVLSKGHLIEVERADLVGEYIGHTAQKTRDMVRKAIGGVLFVDEAY 172 >A6CS62.1 A6CS62_9BACI SpoVK Length = 316 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/122 (68%), Positives = 104/122 (85%), Gaps = 1/122 (0%) Query: 54 HSEWFQELNRELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGT 113 H+E +E+ EL +LVG+E++K++V EIYA + + K R +AGL +G QA HM+FKGNPGT Sbjct: 42 HAE-LKEIEAELASLVGMEDMKKMVKEIYAWIYVNKKREEAGLKAGKQALHMMFKGNPGT 100 Query: 114 GKTTVARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDE 173 GKTTVAR++ KLF +M VLTKGHLIE ERADLVGEYIGHTAQKTRDL+KKA+GGILF+DE Sbjct: 101 GKTTVARLIGKLFHKMNVLTKGHLIEAERADLVGEYIGHTAQKTRDLIKKAMGGILFVDE 160 Query: 174 AY 175 AY Sbjct: 161 AY 162 >C1PFY8.1 C1PFY8_BACCO Stage V sporulation protein K Length = 313 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/120 (70%), Positives = 99/120 (82%) Query: 56 EWFQELNRELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGK 115 E +E+ EL LVG+E IK++V E+YA + I K R AGL +G QA HM+FKGNPGTGK Sbjct: 43 EILKEIEDELGTLVGMEEIKKMVKEVYAWIYINKKREAAGLKTGKQALHMMFKGNPGTGK 102 Query: 116 TTVARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 TTVAR++ KLF +M VL+KGHLIE ERADLVGEYIGHTAQKTRDL+KKA+GGILFIDEAY Sbjct: 103 TTVARLIGKLFHKMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLIKKAIGGILFIDEAY 162 >Q65J83.1 Q65J83_BACLD SpoVK Length = 321 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 106/154 (68%), Gaps = 1/154 (0%) Query: 22 QINIVLRNQDTPXXXXXXXXXXXXXXPPKNNGHSEWFQELNRELDALVGLENIKELVFEI 81 QINI+L Q KN +E+ RE++ LVG+E +K + EI Sbjct: 13 QINIILNGQ-KQVLANSEAEAEYQAALQKNEAKHSILKEIEREMNTLVGMEEMKRNIKEI 71 Query: 82 YALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVAKLFQRMGVLTKGHLIEVE 141 YA + + K R + GL +G QA HM+FKGNPGTGKTTVAR++ +LF M VL+KGHLIE E Sbjct: 72 YAWIFVNKKREEQGLKAGKQALHMMFKGNPGTGKTTVARLIGRLFYEMNVLSKGHLIEAE 131 Query: 142 RADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 RADLVGEYIGHTAQKTRDL+KKA+GGILFIDEAY Sbjct: 132 RADLVGEYIGHTAQKTRDLIKKAMGGILFIDEAY 165 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,119,953,955 Number of extensions: 41601887 Number of successful extensions: 197564 Number of sequences better than 1.0e-05: 482 Number of HSP's gapped: 197807 Number of HSP's successfully gapped: 592 Length of query: 211 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 81 Effective length of database: 1,835,964,253 Effective search space: 148713104493 Effective search space used: 148713104493 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)