BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0009.p
         (177 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6S8.1 B3K6S8_9BACI Putative uncharacterized protein                162   1e-38
B1DMN2.1 B1DMN2_9BACL Putative uncharacterized protein                123   7e-27
C0Z7Z8.1 C0Z7Z8_BREBN Putative uncharacterized protein                 99   2e-19
A8MIU8.1 A8MIU8_ALKOO Putative uncharacterized protein                 93   1e-17
O07474.1 O07474_STAGA GdmH                                             82   3e-14

>B3K6S8.1 B3K6S8_9BACI Putative uncharacterized protein
          Length = 217

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 102/134 (76%)

Query: 44  LDYGLELYREGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYE 103
           L++ L  Y  G+F  FIV+GGLD+ +Y YTEAEGM+N+LVE GVPE  I LE+++TSTYE
Sbjct: 79  LEHALVEYNAGRFDTFIVTGGLDKPEYNYTEAEGMRNFLVEAGVPEERIFLENEATSTYE 138

Query: 104 NLRFSQKLMKSKDLNTAVIITHTFHGQRALEIARELNYNRPELGLTDSQVMSMLKYKTRE 163
           NL +SQ +M+    NTA+I+TH +HG RA+E+A  L+Y++P + LT+S V+ M K+K+RE
Sbjct: 139 NLLYSQAIMEEHGWNTAIIVTHDYHGTRAMEVATALDYDQPSMSLTESTVLPMAKHKSRE 198

Query: 164 ILAYTKWKMQQLFL 177
           +LAYTKW   +L +
Sbjct: 199 VLAYTKWTADRLLI 212


>B1DMN2.1 B1DMN2_9BACL Putative uncharacterized protein
          Length = 194

 Score =  123 bits (308), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 88/134 (65%)

Query: 44  LDYGLELYREGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYE 103
           LD+  +LY++GK   FI+SGGLDR   K TEA+GMK YL+ +G+P + ++L++ + STYE
Sbjct: 51  LDFADKLYKDGKVNMFILSGGLDRNGSKLTEAQGMKAYLLAKGIPADKMLLDNAARSTYE 110

Query: 104 NLRFSQKLMKSKDLNTAVIITHTFHGQRALEIARELNYNRPELGLTDSQVMSMLKYKTRE 163
           NL  S+ +     LN  +++TH +H  RA+E+AR L+Y         S+V+S  K ++RE
Sbjct: 111 NLLNSKVIAAEHGLNKLLVVTHDYHAPRAMEMARYLDYENVTAAAFHSEVLSPFKNQSRE 170

Query: 164 ILAYTKWKMQQLFL 177
           +LAY KWK   + L
Sbjct: 171 VLAYAKWKADAVLL 184


>C0Z7Z8.1 C0Z7Z8_BREBN Putative uncharacterized protein
          Length = 213

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 2/127 (1%)

Query: 50  LYREGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYENLRFSQ 109
           LY+EG   + +V+GGL       TEA   +NYLV +G+PE  I+LE KSTSTYENL + Q
Sbjct: 79  LYKEGYVSKLLVTGGLGE-GKTITEAAVSRNYLVAKGIPEEDILLESKSTSTYENLLYGQ 137

Query: 110 KLMKSKDLNTAVIITHTFHGQRALEIARELNYNRPELGLTDSQVMSMLKYKTREILAYTK 169
           ++++   +  A+II+H +H  RA+ +A  L      +G T S V+    +K RE+LA T 
Sbjct: 138 QVLEEHHIQDALIISHDYHLARAMVMADSLGIVASPVG-TTSHVLFGPYHKAREVLALTY 196

Query: 170 WKMQQLF 176
           W++ +LF
Sbjct: 197 WELSRLF 203


>A8MIU8.1 A8MIU8_ALKOO Putative uncharacterized protein
          Length = 191

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 75/134 (55%), Gaps = 16/134 (11%)

Query: 44  LDYGLELYREGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYE 103
           L+  L LY EG     IVSG     D   TEA  MK YL+  GVPE+AI+ ED S STYE
Sbjct: 60  LEKTLTLYNEGFADTIIVSGARGD-DELITEALAMKIYLMNNGVPESAILEEDHSYSTYE 118

Query: 104 NLRFSQKLMKSKDLNTAVIITHTFHGQRALEIARELNY--------NRPELGLTDSQVMS 155
           NL +S  +MK KDL +A+I++++FH  RAL IA+ L+         N P + LT      
Sbjct: 119 NLSYSNAIMKEKDLKSAIIVSNSFHMSRALMIAKRLDMSASGAAAKNYPNIFLTT----- 173

Query: 156 MLKYKTREILAYTK 169
             KY  RE+ A  K
Sbjct: 174 --KYYIREVFACVK 185


>O07474.1 O07474_STAGA GdmH
          Length = 330

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 5/85 (5%)

Query: 58  RFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYENLRFSQKLMKSKDL 117
           +F++SGG  + D + +EA+ MKNYL+ QGV EN II E+KS STYENL+FS+KL+K    
Sbjct: 198 KFLLSGGQGK-DERISEAQAMKNYLISQGVNENKIICENKSQSTYENLQFSKKLIKK--- 253

Query: 118 NTAVII-THTFHGQRALEIARELNY 141
           NT ++I ++ FH  RA+ IA++L Y
Sbjct: 254 NTNILICSNNFHILRAVFIAKKLKY 278


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,026,945,488
Number of extensions: 38114304
Number of successful extensions: 88761
Number of sequences better than 1.0e-05: 809
Number of HSP's gapped: 88595
Number of HSP's successfully gapped: 809
Length of query: 177
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 50
Effective length of database: 1,864,227,298
Effective search space: 93211364900
Effective search space used: 93211364900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)