BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0008.p (204 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6S9.1 B3K6S9_9BACI Putative uncharacterized protein 293 4e-78 Q2BEY1.1 Q2BEY1_9BACI Putative uncharacterized protein 130 5e-29 C2W5V2.1 C2W5V2_BACCE Putative uncharacterized protein 129 1e-28 Q8ETB2.1 Q8ETB2_OCEIH Hypothetical conserved protein 129 1e-28 C3BI09.1 C3BI09_9BACI Putative uncharacterized protein 128 3e-28 >B3K6S9.1 B3K6S9_9BACI Putative uncharacterized protein Length = 185 Score = 293 bits (751), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 138/184 (75%), Positives = 153/184 (83%) Query: 21 MKRKFGDRANWRRITRRHFACRYVESREFSGYITLYTIYGLKEPLWKSYGRHTYRIADKG 80 MKRKFGDRANWRRITRRHF RYVE +F+GY+TLYTIYGLKEPLWK+YGRHTYRIADKG Sbjct: 1 MKRKFGDRANWRRITRRHFTSRYVECEQFTGYLTLYTIYGLKEPLWKTYGRHTYRIADKG 60 Query: 81 YSWLQYFPKDSHYIVTAMFDERQNIVQWYIDTCKVQGVTDQGVPWFDDLYLDVVVLWNGE 140 YSWLQY+PKDSHYIVTAMFD+++NIVQWYID CK QGVTDQGVPWFDDLYLDVVV+ NGE Sbjct: 61 YSWLQYYPKDSHYIVTAMFDDKRNIVQWYIDICKKQGVTDQGVPWFDDLYLDVVVVKNGE 120 Query: 141 VFXXXXXXXXXXXXXXXITDSDYNLAWATASSILRSIDAHAFPYFSLSLKHRAELFHHGE 200 VF IT DY LA TA ++LR+IDAH FPYF +SLKHR +LFH+GE Sbjct: 121 VFLLDEDELEDALRRNDITRDDYRLAKVTARNLLRAIDAHEFPYFMMSLKHRDQLFHNGE 180 Query: 201 FRRK 204 FRRK Sbjct: 181 FRRK 184 >Q2BEY1.1 Q2BEY1_9BACI Putative uncharacterized protein Length = 191 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 1/171 (0%) Query: 21 MKRKFGDRANWRRITRRHFACRYVESREFSGYITLYTIYGLKEPLWKSYGRHTYRIADKG 80 +KR G R W+R+T R ++ +++++EF+G++ L + + E L Y IA G Sbjct: 2 LKRVDGRRGAWKRVTDRAYSQCWLDAKEFTGHLALIELIKVTEKLTVKYEEKEICIAADG 61 Query: 81 YSWLQYFPKDSHYIVTAMFDERQNIVQWYIDTCKVQGVTDQGVPWFDDLYLDVVVLWNGE 140 YSWLQ+FP+ Y VT M DE I+QWYID C G+ ++ +PW DDL+LD+VVL G Sbjct: 62 YSWLQHFPEGKFYTVTTMMDENGEILQWYIDICHEIGL-EENIPWMDDLFLDIVVLPAGN 120 Query: 141 VFXXXXXXXXXXXXXXXITDSDYNLAWATASSILRSIDAHAFPYFSLSLKH 191 V+ IT YNLA AS ++ +I A +FP +L+ +H Sbjct: 121 VYLLDEEELEDAHNAGIITREMYNLARNQASELMAAIQAGSFPLLNLAKEH 171 >C2W5V2.1 C2W5V2_BACCE Putative uncharacterized protein Length = 172 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 4/175 (2%) Query: 21 MKRKFGDRANWRRITRRHFACRYVESREFSGYITLYTIYGLKEPLWKSYGRHTYRIADKG 80 MKRK+GD ++W R+ + + + +E G + + I +KEP +K Y I D G Sbjct: 1 MKRKYGDGSSWNRLIEKTYEVKAIEK----GMLGILRIQKVKEPSYKKYNDRELCIVDAG 56 Query: 81 YSWLQYFPKDSHYIVTAMFDERQNIVQWYIDTCKVQGVTDQGVPWFDDLYLDVVVLWNGE 140 Y+W+QYF D ++ +TAM +E++ +VQ+YID K + G+P+FDDLYLDVV+L NG+ Sbjct: 57 YTWVQYFISDKNFAITAMLNEKKELVQYYIDVAKKFKIDGSGMPYFDDLYLDVVLLSNGD 116 Query: 141 VFXXXXXXXXXXXXXXXITDSDYNLAWATASSILRSIDAHAFPYFSLSLKHRAEL 195 ++ I++ +YN+AW TA ++ I+ FP+ ++ K +L Sbjct: 117 LYLLDEDELEEAYVARDISEEEYNVAWDTAKWLIEVIEKDEFPWIAILEKEIQKL 171 >Q8ETB2.1 Q8ETB2_OCEIH Hypothetical conserved protein Length = 180 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 91/172 (52%), Gaps = 2/172 (1%) Query: 21 MKRKFGDRANWRRITRRHFACRYVESREFSGYITLYTIYGLKEPLWKSYGR-HTYRIADK 79 MKRK+GDRANW+RI R +A Y+ +EF GYITL + + +PL Y + I + Sbjct: 1 MKRKYGDRANWQRILERSYAQAYINEKEFKGYITLIHMKKVSQPLVIHYEQGKQLSIVED 60 Query: 80 GYSWLQYFPKDSHYIVTAMFDERQNIVQWYIDTCKVQGVTDQGVPWFDDLYLDVVVLWNG 139 G+ WLQ FP H+ VT FD N+ QWYID GV + G+P+ DDLYLD+V L +G Sbjct: 61 GFMWLQQFPDHEHFAVTTTFDANGNVKQWYIDIAWANGV-EGGIPYVDDLYLDIVHLPSG 119 Query: 140 EVFXXXXXXXXXXXXXXXITDSDYNLAWATASSILRSIDAHAFPYFSLSLKH 191 E F I YNLA + I I ++F SL +H Sbjct: 120 ETFMLDEEELQDALLTNEINRDMYNLAQNESIKIQEQIKNNSFSILSLVHQH 171 >C3BI09.1 C3BI09_9BACI Putative uncharacterized protein Length = 184 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 103/180 (57%), Gaps = 6/180 (3%) Query: 16 ERVIHMKRKFGDRANWRRITRRHFACRYVESREFSGYITLYTIYGLKEPLWKSYGRHTYR 75 ER+ MKRK+GD ++W R+ + + + +E G + + + EP +K Y Sbjct: 10 ERI--MKRKYGDGSSWERLIEKTYEVKIIEQ----GMLGILHTPKVTEPSYKQYNNQELC 63 Query: 76 IADKGYSWLQYFPKDSHYIVTAMFDERQNIVQWYIDTCKVQGVTDQGVPWFDDLYLDVVV 135 I + GY+W+QYF D ++ +TAM DE++N+VQ+YID K + +G+P+FDDLYLDVV+ Sbjct: 64 IVNDGYTWVQYFINDKNFAITAMLDEKKNLVQYYIDVAKKFRIDGRGMPYFDDLYLDVVL 123 Query: 136 LWNGEVFXXXXXXXXXXXXXXXITDSDYNLAWATASSILRSIDAHAFPYFSLSLKHRAEL 195 L NGEV+ I++ ++N+AW TA ++ I+ P+ ++ K +L Sbjct: 124 LPNGEVYLLDEDELEEAYIAGDISEEEHNVAWDTAKWLMEEIEKEKLPWIAILEKEIQKL 183 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,211,270,946 Number of extensions: 45230476 Number of successful extensions: 95594 Number of sequences better than 1.0e-05: 106 Number of HSP's gapped: 95422 Number of HSP's successfully gapped: 106 Length of query: 204 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 75 Effective length of database: 1,845,385,268 Effective search space: 138403895100 Effective search space used: 138403895100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)