BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0001.p (544 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6T4.1 B3K6T4_9BACI DNA mismatch repair protein MutL 287 2e-75 B1DG20.1 B1DG20_9BACL DNA mismatch repair protein MutL 237 2e-60 B3K6T3.1 B3K6T3_9BACI Putative uncharacterized protein 231 1e-58 Q2B1M3.1 Q2B1M3_9BACI DNA mismatch repair protein 184 2e-44 B1DG21.1 B1DG21_9BACL Putative uncharacterized protein 182 6e-44 >B3K6T4.1 B3K6T4_9BACI DNA mismatch repair protein MutL Length = 660 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 142/207 (68%), Positives = 167/207 (80%), Gaps = 6/207 (2%) Query: 38 REGAGSESYRQFPSVNPAKGQ--MPSA--EELYAPPGTEDAGLPQFPELNYIGQHHGTYI 93 RE A S SYR N A+G +P+ E L A G +P FPEL IGQHHGTY+ Sbjct: 426 RETAASSSYRS-DYRNEARGGAGIPAVTKEWLQAVSGPAPE-IPPFPELTLIGQHHGTYL 483 Query: 94 IAQNDSGLYLIDQHAAHERVNYEYYYEKFGRPEDASQELLLPITLEFTPSESKQLSERLH 153 IAQND+GLYLIDQHAAHER+NYEYYYE+FG P DASQELLLPITLEFTPSES+++ +RLH Sbjct: 484 IAQNDTGLYLIDQHAAHERINYEYYYEQFGNPADASQELLLPITLEFTPSESEKVKDRLH 543 Query: 154 WFQQAGVYLEHFGGQTFLVRSLPYWFPEGDEKAVIEEMAEWVLSERSIDLAKLREKSSIL 213 WF++ GVY+E FGG TFLVRS P+WFP+G+EKA+IEEMAEWVL+ER+ID+AKLRE SSI+ Sbjct: 544 WFEKVGVYMEFFGGHTFLVRSHPFWFPKGEEKAIIEEMAEWVLNERNIDIAKLRETSSIM 603 Query: 214 CSCKASIKANQKLTEHEVESLLSRLPA 240 CSCKASIKANQKLTE E +L+ RL A Sbjct: 604 CSCKASIKANQKLTEQEAMTLIQRLGA 630 >B1DG20.1 B1DG20_9BACL DNA mismatch repair protein MutL Length = 679 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/225 (55%), Positives = 160/225 (71%), Gaps = 21/225 (9%) Query: 34 ERIY-----REGAGSESYRQFPSVNPAKGQMPSAEELYAPPGTEDA------------GL 76 ER+Y RE + E+ + PA + +AEE APP D+ G Sbjct: 427 ERLYKPAEQRETSVREAAAPWEQAAPA---LQAAEETSAPPPAPDSERPVGEASERPDGT 483 Query: 77 PQFPELNYIGQHHGTYIIAQNDSGLYLIDQHAAHERVNYEYYYEKFGRPEDASQELLLPI 136 P FP+L +IGQ HGTYI+AQ + GLYLIDQHAAHER+NYEYY+ KFG P+ ASQ+LL+P+ Sbjct: 484 PAFPDLYWIGQLHGTYIVAQAEEGLYLIDQHAAHERINYEYYFRKFGNPQAASQQLLVPL 543 Query: 137 TLEFTPSESKQLSERLHWFQQAGVYLEHFGGQTFLVRSLPYWFPEGDEKAVIEEMAEWVL 196 TLEFT E++QL + FQ+AGV LE FG QTFLVR+ P WFP+G+E+A+IEEMAE +L Sbjct: 544 TLEFTSGEAEQLRGMIGLFQEAGVELEPFGAQTFLVRAYPEWFPQGEEQAIIEEMAELLL 603 Query: 197 SER-SIDLAKLREKSSILCSCKASIKANQKLTEHEVESLLSRLPA 240 SER S+++AKLREK++I+CSCKASIKAN + T E E+LL+RL A Sbjct: 604 SERKSVNIAKLREKAAIMCSCKASIKANDRKTREEGEALLARLAA 648 >B3K6T3.1 B3K6T3_9BACI Putative uncharacterized protein Length = 259 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 122/241 (50%), Positives = 150/241 (62%) Query: 286 MIITTGFDPIPAIEMRAKSLAERTGTIYTPRGKLSMSKMAERYKDGEILVVLQDAVRLIT 345 MIITTG P I RAK LA+ TG Y RG S+ K+A R+ D ++LVVL VRL Sbjct: 1 MIITTGEAEAPDIVERAKRLAQETGCRYVQRGGHSLRKLARRFGDDDVLVVLNGHVRLSG 60 Query: 346 PGMPPMEFHPSMGFVRAKRIIRGEPDPMLEAARMVPGDSVLDCTAGLGSDSLLFAVYGGE 405 PG MEFHPSMGFVR KR++ G+PDPMLEA+ M GDSVLDCTAGLG+DSL+F+ GG Sbjct: 61 PGGSVMEFHPSMGFVRLKRVLNGKPDPMLEASGMEEGDSVLDCTAGLGADSLVFSGKGGA 120 Query: 406 ASTVTXXXXXXXXXXXXXXGMSHYISGQEKVNEALRRVRVVHSDHLAYLREQPDNSIDIV 465 S +T G+ Y S E ++A+RR+ V HS HL YL+ PD S+DIV Sbjct: 121 NSRITALESSLPLFALLKEGLRTYESHLEASDQAMRRIEVRHSHHLDYLKSLPDQSVDIV 180 Query: 466 YFDPMFRVPLTDSAAISPLRQFXXXXXXXXXXXXXXXXXXXKTVLLKEKALSGEFSRLCF 525 YFDPMFR P+TDSA+I+PLR + KTV++KE SGEF RL F Sbjct: 181 YFDPMFREPITDSASINPLRHYANGEPLDAESVREAIRVARKTVVMKEARSSGEFERLGF 240 Query: 526 S 526 + Sbjct: 241 A 241 >Q2B1M3.1 Q2B1M3_9BACI DNA mismatch repair protein Length = 640 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/167 (50%), Positives = 120/167 (71%) Query: 72 EDAGLPQFPELNYIGQHHGTYIIAQNDSGLYLIDQHAAHERVNYEYYYEKFGRPEDASQE 131 E + + + P L IGQ HGTYI+AQND GLY+IDQHAA ER+ YEY+ +K G+ E QE Sbjct: 442 EASAVHRVPPLYPIGQMHGTYILAQNDRGLYVIDQHAAQERIKYEYFRDKVGQVESELQE 501 Query: 132 LLLPITLEFTPSESKQLSERLHWFQQAGVYLEHFGGQTFLVRSLPYWFPEGDEKAVIEEM 191 +L+P+T E+ E +++E + ++ G++LEHFG TF+VRS P WFP+G+E+ +IE+M Sbjct: 502 MLVPLTFEYPADEYIKINEHIAELEKVGIFLEHFGQNTFIVRSHPQWFPKGEEQQIIEDM 561 Query: 192 AEWVLSERSIDLAKLREKSSILCSCKASIKANQKLTEHEVESLLSRL 238 E VLS + D+ KLRE+++I+ SCKASIKAN L E+++LL L Sbjct: 562 IEQVLSMKKADVKKLREEAAIMMSCKASIKANHHLRNDEIQALLDML 608 >B1DG21.1 B1DG21_9BACL Putative uncharacterized protein Length = 263 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/241 (40%), Positives = 134/241 (55%), Gaps = 1/241 (0%) Query: 286 MIITTGFDPIPAIEMRAKSLAERTGTIYTPRGKLSMSKMAERYKDGEILVVLQDAVRLIT 345 MI+TT P AK LA Y RGK ++ +MAER ++ ++VV + VR Sbjct: 1 MIVTTSDKPSQRALATAKRLAGELSAPYVSRGKQTLRQMAERMEEIRLIVVTEKEVRYYD 60 Query: 346 PGM-PPMEFHPSMGFVRAKRIIRGEPDPMLEAARMVPGDSVLDCTAGLGSDSLLFAVYGG 404 P+ FHPSM FVR KR+ RGE DP+L+ R PGDSV+DCTAG +DSL+F+ G Sbjct: 61 GQTESPLYFHPSMAFVRVKRLRRGESDPLLDLTRCKPGDSVIDCTAGFAADSLVFSYAAG 120 Query: 405 EASTVTXXXXXXXXXXXXXXGMSHYISGQEKVNEALRRVRVVHSDHLAYLREQPDNSIDI 464 E+ VT G++ Y +G V+ A+RR+ +++ +H YL PDNS+DI Sbjct: 121 ESGAVTAIESEPILCAVVREGLAGYQTGLPDVDAAMRRISMINDNHADYLAGLPDNSVDI 180 Query: 465 VYFDPMFRVPLTDSAAISPLRQFXXXXXXXXXXXXXXXXXXXKTVLLKEKALSGEFSRLC 524 V+FDPMFR P+ +S A+ PLR+ KTV++KE SGEF RL Sbjct: 181 VFFDPMFRQPIHESNAMEPLRKLANDSALTEKAVQEAIRVARKTVVMKEHRESGEFERLG 240 Query: 525 F 525 F Sbjct: 241 F 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,983,206,382 Number of extensions: 121059500 Number of successful extensions: 260180 Number of sequences better than 1.0e-05: 1103 Number of HSP's gapped: 259676 Number of HSP's successfully gapped: 1103 Length of query: 544 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 403 Effective length of database: 1,732,333,088 Effective search space: 698130234464 Effective search space used: 698130234464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)