BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0475.0005.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q3XZ06.1 Q3XZ06_ENTFC Regulatory protein, GntR:Bacterial regulat... 251 5e-65 A6M2S4.1 A6M2S4_CLOB8 Transcriptional regulator, GntR family 238 5e-61 A4E7Q2.1 A4E7Q2_9ACTN Putative uncharacterized protein 183 1e-44 B6G9U2.1 B6G9U2_9ACTN Putative uncharacterized protein 174 7e-42 A8RXP9.1 A8RXP9_9CLOT Putative uncharacterized protein 166 2e-39 >Q3XZ06.1 Q3XZ06_ENTFC Regulatory protein, GntR:Bacterial regulatory protein, GntR Length = 236 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 1 MLNSEQVEPLYIQLKKAVQAAIANGSFNPGDKIPTEIELSATYNVSRITVRKAIEELVSE 60 ML++ PLY+QLK+ ++ I G + KIP E EL +Y VSRITVRKA+EELV E Sbjct: 1 MLDTNAQLPLYLQLKEILKNKINTGEYPENTKIPAESELIESYEVSRITVRKAVEELVEE 60 Query: 61 GYLTKRQGKGTFVNAHKIGRKIEHIISFTAACRANGLSSHSVITERKKIKADQETAERLQ 120 GYL K+QGKGTFVN HK+ RKIE+++ F+ +C++NG + S++ ERK I A + A++L Sbjct: 61 GYLLKKQGKGTFVNRHKVFRKIEYVMGFSESCKSNGFTPTSIVLERKIIPATEGMAKKLD 120 Query: 121 IQQGEPVLYIQRKRYAGERPLMLENNYYPFERFSFLMEESLEGSVYELLRDRYQIDPNQP 180 I QG+ VLYIQRKR A P+MLENNY+ +ER+SFLMEE L S+YE+L+ + + N P Sbjct: 121 IAQGDDVLYIQRKRMADNIPIMLENNYFSYERYSFLMEEELTDSLYEVLKVQGTLAIN-P 179 Query: 181 GETVXXXXTLADEQQAKLLEIPIGQPLFYMNTIIYDQHSKPVHVGKQYIIGDRYQFTL 238 GET T AD+Q AK++E+ +G P F+M+T+I DQ++ P+HVG QY +G+ Y+F L Sbjct: 180 GETALEIVT-ADDQIAKIMEVAVGTPFFFMDTLINDQNNIPIHVGNQYYLGEVYRFYL 236 >A6M2S4.1 A6M2S4_CLOB8 Transcriptional regulator, GntR family Length = 243 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 119/242 (49%), Positives = 170/242 (70%), Gaps = 4/242 (1%) Query: 1 MLNSEQVEPLYIQLKKAVQAAIANGSFNPGDKIPTEIELSATYNVSRITVRKAIEELVSE 60 ML + + PLY QL ++ +I +G GDKIPTE+ELS YNVSRITVR AI ELV Sbjct: 1 MLIQDNIIPLYQQLADIIRNSITSGELKYGDKIPTEVELSEKYNVSRITVRAAINELVES 60 Query: 61 GYLTKRQGKGTFVNAHKIGRKIEHIISFTAACRANGLSSHSVITERKKIKADQETAERLQ 120 G++ K+QGKGTFV+ K+ RKIE++ SFTAAC A+GL + I +R+ ++ E + L+ Sbjct: 61 GFIIKKQGKGTFVSKPKVQRKIEYLSSFTAACEASGLKVTNEIIKREVMEPKIEDKKDLE 120 Query: 121 IQQGEPVLYIQRKRYAGERPLMLENNYYPFERFSFLMEESLEGSVYELLRDRYQIDPNQP 180 + + ++YIQR R+AG PLMLENNY+ F+RF+FL+ E L GS+YELLRD+Y I+P+ Sbjct: 121 LDDDDKLIYIQRVRFAGGDPLMLENNYFSFKRFNFLLTEDLSGSLYELLRDKYDINPSDS 180 Query: 181 GETVXXXXTL----ADEQQAKLLEIPIGQPLFYMNTIIYDQHSKPVHVGKQYIIGDRYQF 236 + T+ A +++A LL + G+PLFY+ T+IYD ++PVH+GKQY+IG+RY+F Sbjct: 181 PNSGNDHTTIEIAKAMDEEAALLMVQKGEPLFYIKTVIYDDKNRPVHIGKQYVIGERYKF 240 Query: 237 TL 238 + Sbjct: 241 VI 242 >A4E7Q2.1 A4E7Q2_9ACTN Putative uncharacterized protein Length = 247 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/234 (40%), Positives = 140/234 (59%), Gaps = 5/234 (2%) Query: 9 PLYIQLKKAVQAAIANGSFNPGDKIPTEIELSATYNVSRITVRKAIEELVSEGYLTKRQG 68 PLY Q+ ++ I +G++ G +IP E EL+ Y V R+TVR+AIEELV +GYLTKRQG Sbjct: 15 PLYQQVIDIIKNEINSGAYKAGARIPNEFELAENYKVGRVTVRRAIEELVQQGYLTKRQG 74 Query: 69 KGTFVNAHKIGRKI---EHIISFTAACRANGLSSHSVITERKKIKADQETAERLQIQQGE 125 KGTFVNA K+ RKI + + SF+ ACR NG+ + + RK + AD A+ + G Sbjct: 75 KGTFVNAPKLKRKIRQKDDVQSFSDACRVNGMEPGACVISRKILPADSTEAQFFGVPVGT 134 Query: 126 PVLYIQRKRYAGERPLMLENNYYPFERFSFLMEESLEG-SVYELLRDRYQIDPNQPGETV 184 ++ ++R R A P+MLENN Y +E ++L L S++E +R+R P + Sbjct: 135 DLICVERVRTADGVPVMLENNIYVYEDNAYLSTAPLSNQSIFEFVRNRTGRTPAF-TDPC 193 Query: 185 XXXXTLADEQQAKLLEIPIGQPLFYMNTIIYDQHSKPVHVGKQYIIGDRYQFTL 238 A + A+LL +P+G+PLFYM +D+ +P +G+Q I+G RY F + Sbjct: 194 TLEIACASPEVARLLAVPVGEPLFYMEAFFFDEQRRPFIIGRQRIVGSRYVFDI 247 >B6G9U2.1 B6G9U2_9ACTN Putative uncharacterized protein Length = 245 Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 107/237 (45%), Positives = 142/237 (59%), Gaps = 10/237 (4%) Query: 9 PLYIQLKKAVQAAIANGSFNPGDKIPTEIELSATYNVSRITVRKAIEELVSEGYLTKRQG 68 PLY Q+ ++A I G + G KIP E ELS Y+VSRITVRKAIE LV EG L+KRQG Sbjct: 12 PLYQQVANDLRATIERGIYRVGQKIPPEPELSQLYSVSRITVRKAIELLVDEGLLSKRQG 71 Query: 69 KGTFVNAHKIGRKIEH-----IISFTAACRANGLSSHSVITERKKIKADQETAERLQIQQ 123 KGTFV + RKI ++ F+ +CRANG+ +V+ R I A E ER Sbjct: 72 KGTFVCQTEPSRKIRDDRRTKVMGFSESCRANGVVPGAVLLSR-SITAVPE-GERTFFGD 129 Query: 124 G-EPVLYIQRKRYAGERPLMLENNYYPFERFSFLMEESLEG-SVYELLRDRYQIDPNQPG 181 G +L I+R R A PLM+E+N + + FL ESL+ S+++L+ R + Sbjct: 130 GTRDLLEIERVRTADGAPLMVESNLFAVQGLEFLETESLDDVSLFDLIAGRTGRHAVRSS 189 Query: 182 ETVXXXXTLADEQQAKLLEIPIGQPLFYMNTIIYDQHSKPVHVGKQYIIGDRYQFTL 238 T ADE+ AKLL +P+G+PLFY+ YDQH KP++VGKQ+IIG RY FT+ Sbjct: 190 SQSLNIVT-ADERLAKLLNVPLGEPLFYLLGHYYDQHGKPLYVGKQFIIGSRYTFTM 245 >A8RXP9.1 A8RXP9_9CLOT Putative uncharacterized protein Length = 240 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 4/237 (1%) Query: 2 LNSEQVEPLYIQLKKAVQAAIANGSFNPGDKIPTEIELSATYNVSRITVRKAIEELVSEG 61 LN E PLY QL + +Q I NG D+IPTEIELS Y+VSRITVRKA+E LV E Sbjct: 4 LNKESSVPLYQQLMEVIQNQILNGELKENDRIPTEIELSREYDVSRITVRKAVELLVEEE 63 Query: 62 YLTKRQGKGTFVNAHKIGRKIEHIISFTAACRANGLSSHSVITERKKIKADQETAERLQI 121 L KRQG GTFV+ K+ R I + FT +C A G ++ + + + +A AE L+I Sbjct: 64 ILVKRQGIGTFVSQKKLCRNINGFMGFTQSCLAEGNTAGAQLVSAELAEATMVDAEELKI 123 Query: 122 QQGEPVLYIQRKRYAGERPLMLENNYYPFERFSFLMEESLEGSVYELLRDRYQIDPNQPG 181 Q+ E ++ I R R P+MLE N++P RF++L+ L GS+Y++L + I N Sbjct: 124 QEHEKIIKIVRVRTCDGIPVMLEENHFP-ARFAYLLGHDLTGSIYQILAENGTIMDNGIK 182 Query: 182 ETVXXXXTLADEQQAKLLEIPIGQPLFYMNTIIYDQHSKPVHVGKQYIIGDRYQFTL 238 A+E + K L + + +PL Y+ + YD+ PVH K I DRY+ T+ Sbjct: 183 RI---GICQANEIEHKHLGVDLDKPLLYVKDVSYDREGNPVHNCKSVINPDRYKMTV 236 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,326,475,262 Number of extensions: 51145488 Number of successful extensions: 150554 Number of sequences better than 1.0e-05: 4367 Number of HSP's gapped: 147633 Number of HSP's successfully gapped: 4367 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)