BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0475.0002.p (456 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9VMP1.1 A9VMP1_BACWK Sensor protein EC=2.7.13.3 644 0.0 B3KBY3.1 B3KBY3_9BACI Sensor protein EC=2.7.13.3 636 e-180 C2SMU9.1 C2SMU9_BACCE Putative uncharacterized protein 602 e-170 C2XWL9.1 C2XWL9_BACCE Putative uncharacterized protein 598 e-169 C3A8J2.1 C3A8J2_BACMY Putative uncharacterized protein 597 e-169 >A9VMP1.1 A9VMP1_BACWK Sensor protein EC=2.7.13.3 Length = 455 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/455 (68%), Positives = 376/455 (82%), Gaps = 3/455 (0%) Query: 1 MIRSLYTRVVLTYLVSVIGGTIIALLVATWVYYDQFNENLKTNILYYGQDIVRMYESFPL 60 MIRSLY RVVLT+LVS+IGGTII+ LV+TW++ D+ NEN + N+ +GQDIVR+Y++FPL Sbjct: 1 MIRSLYIRVVLTFLVSIIGGTIISFLVSTWIFEDKLNENAQINLRNFGQDIVRIYKTFPL 60 Query: 61 QEVDTYLSGMKQL-SYYIRVYDETGQFQSYGTLNGSRIPTITMDQVKAVLDGEVVQ--VS 117 +E D ++S MKQL SYYIR+Y+ TGQF+SYG L+G + +TM+Q+K VLDG VVQ + Sbjct: 61 READLFVSEMKQLDSYYIRIYEATGQFKSYGKLHGHKPAPVTMEQLKKVLDGGVVQDTPN 120 Query: 118 GVDKSLLGLPLKTETGKKALFVNSVAPPSATFFIKWLLNFVAFSLIAGSLIILVAAMFLV 177 G+ LLGLPLKTE G KA+F+ ++APPSA+F KW L F SLIAGSL+ILVA++FLV Sbjct: 121 GIATVLLGLPLKTEMGTKAIFLEALAPPSASFVTKWALVFATCSLIAGSLLILVASVFLV 180 Query: 178 RPIKKLTKATRQIATGDFSVNLNIKQKGELGTLARSFEDMMHDLQQLEQMRRDFVSNVSH 237 RPIKKLTKAT++IA+GDF+V LNIKQ ELGTLARSFE+MMHDLQQLEQMRR+FV+NVSH Sbjct: 181 RPIKKLTKATKRIASGDFNVKLNIKQTSELGTLARSFEEMMHDLQQLEQMRREFVTNVSH 240 Query: 238 EVQSPLTSISGYAKALKQVNLAEQERSRYLDIIIAEAERMSKMSDGXXXXXXXXXXXXXX 297 EVQSPLTSISGYA LKQV+L+E ERSRYLDIIIAEA+RMSKMSD Sbjct: 241 EVQSPLTSISGYALVLKQVDLSEYERSRYLDIIIAEAKRMSKMSDNLLKLSFLESQSKQL 300 Query: 298 XXXTFSLDEQIRRVIVAVQPQWSDRNIRFELHLEPVRLTADQDQLNQVWTNLIGNSIKFS 357 T SLDEQIRR+IVA+QPQWS R+I FEL L+ V++TAD D LNQVWTN++ NSIKFS Sbjct: 301 RLVTLSLDEQIRRIIVALQPQWSARDIHFELDLQTVKVTADHDLLNQVWTNILRNSIKFS 360 Query: 358 KDGGVITVSIRQEFKNVTVRVSDTGIGISLEDQKRIFERFFKADRSHSRKYGGSGMGLAI 417 +D GVI VSI+Q+ KNVT+ +SDTGIGI L+DQKRIF+RFFKADRSHSRKY GSGMGLAI Sbjct: 361 EDAGVINVSIKQDIKNVTILISDTGIGIHLDDQKRIFDRFFKADRSHSRKYDGSGMGLAI 420 Query: 418 VKQIISLHQGEIRVESEPGRGATVIVILPTTTPAD 452 VKQI+SLHQG+IRV+SEPG+G T IV LP TTP D Sbjct: 421 VKQIVSLHQGDIRVKSEPGQGTTFIVTLPITTPTD 455 >B3KBY3.1 B3KBY3_9BACI Sensor protein EC=2.7.13.3 Length = 455 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 311/455 (68%), Positives = 375/455 (82%), Gaps = 3/455 (0%) Query: 1 MIRSLYTRVVLTYLVSVIGGTIIALLVATWVYYDQFNENLKTNILYYGQDIVRMYESFPL 60 MIRSLY RVVLT+LVSVIGGTI++ ++TW++ +Q NEN + + +GQD+VR+Y++ PL Sbjct: 1 MIRSLYIRVVLTFLVSVIGGTILSFFMSTWMFKEQLNENAQITLRNFGQDVVRIYKTLPL 60 Query: 61 QEVDTYLSGMKQL-SYYIRVYDETGQFQSYGTLNGSRIPTITMDQVKAVLDGEVVQVS-- 117 +E D ++S MKQL SYY+R+Y+ TGQFQ+YG LNG + +TMD+++ V++G VVQ + Sbjct: 61 READLFVSEMKQLDSYYVRIYEATGQFQAYGKLNGHKPAEVTMDKLQQVIEGGVVQDTQK 120 Query: 118 GVDKSLLGLPLKTETGKKALFVNSVAPPSATFFIKWLLNFVAFSLIAGSLIILVAAMFLV 177 G+ LLGLPLKTETG KA+F+ +APPS +F +KW F SLI GSL+IL+A+++LV Sbjct: 121 GIATVLLGLPLKTETGTKAMFLEMLAPPSTSFVVKWGSIFATSSLITGSLLILIASIYLV 180 Query: 178 RPIKKLTKATRQIATGDFSVNLNIKQKGELGTLARSFEDMMHDLQQLEQMRRDFVSNVSH 237 RPIKKLTKATR+IA GDFSV LNIKQ ELGTLARSFEDMMH+LQQLEQ+RR+FV+NVSH Sbjct: 181 RPIKKLTKATRRIAAGDFSVKLNIKQTSELGTLARSFEDMMHELQQLEQLRREFVTNVSH 240 Query: 238 EVQSPLTSISGYAKALKQVNLAEQERSRYLDIIIAEAERMSKMSDGXXXXXXXXXXXXXX 297 EVQSPLTSISGYA+ALKQVNL++ ER RYLDIIIAEA+RMSKMSD Sbjct: 241 EVQSPLTSISGYAQALKQVNLSDDERRRYLDIIIAEAKRMSKMSDSLLKLSLLESQSQQP 300 Query: 298 XXXTFSLDEQIRRVIVAVQPQWSDRNIRFELHLEPVRLTADQDQLNQVWTNLIGNSIKFS 357 T SLDEQIRRVIVA+QPQW+ R+I+FEL L PV++TAD DQLNQVWTN+IGNSIKFS Sbjct: 301 GLSTLSLDEQIRRVIVALQPQWAARSIQFELDLLPVKVTADHDQLNQVWTNIIGNSIKFS 360 Query: 358 KDGGVITVSIRQEFKNVTVRVSDTGIGISLEDQKRIFERFFKADRSHSRKYGGSGMGLAI 417 KDGGVI VSI+Q+ NVTVR+SDTGIGISLEDQKRIFERFFK DRS SRKY GSGMGLAI Sbjct: 361 KDGGVINVSIKQDMNNVTVRISDTGIGISLEDQKRIFERFFKTDRSRSRKYEGSGMGLAI 420 Query: 418 VKQIISLHQGEIRVESEPGRGATVIVILPTTTPAD 452 VKQI+SLHQG+IRVESEPG+GAT IV LP TPA+ Sbjct: 421 VKQIVSLHQGDIRVESEPGQGATFIVTLPIMTPAN 455 >C2SMU9.1 C2SMU9_BACCE Putative uncharacterized protein Length = 429 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 291/429 (67%), Positives = 352/429 (82%), Gaps = 3/429 (0%) Query: 27 VATWVYYDQFNENLKTNILYYGQDIVRMYESFPLQEVDTYLSGMKQL-SYYIRVYDETGQ 85 ++TW++ D+ NEN + N+ +GQDIVR+Y++FPL+E D ++S MKQL SYYIR+Y+ TGQ Sbjct: 1 MSTWIFEDKLNENAQINLRNFGQDIVRIYKTFPLREADLFVSEMKQLDSYYIRIYEATGQ 60 Query: 86 FQSYGTLNGSRIPTITMDQVKAVLDGEVVQ--VSGVDKSLLGLPLKTETGKKALFVNSVA 143 F+SYG L+G + +TM+Q+K VLDG VVQ +G+ LLGLPLKTE G KA+F+ ++A Sbjct: 61 FKSYGKLHGHKPAPVTMEQLKKVLDGGVVQDTPNGIATVLLGLPLKTEMGTKAIFLEALA 120 Query: 144 PPSATFFIKWLLNFVAFSLIAGSLIILVAAMFLVRPIKKLTKATRQIATGDFSVNLNIKQ 203 PPSA+F KW L F SLIAGSL+ILVA++FLVRPIKKLTKAT++IA+GDF+V LNIKQ Sbjct: 121 PPSASFVTKWALVFATCSLIAGSLLILVASVFLVRPIKKLTKATKRIASGDFNVKLNIKQ 180 Query: 204 KGELGTLARSFEDMMHDLQQLEQMRRDFVSNVSHEVQSPLTSISGYAKALKQVNLAEQER 263 ELGTLARSFE+MMHDLQQLEQMRR+FV+NVSHEVQSPLTSISGYA LKQV+L+E ER Sbjct: 181 TSELGTLARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYER 240 Query: 264 SRYLDIIIAEAERMSKMSDGXXXXXXXXXXXXXXXXXTFSLDEQIRRVIVAVQPQWSDRN 323 SRYLDIIIAEA+RMSKMSD T SLDEQIRR+IVA+QPQWS R+ Sbjct: 241 SRYLDIIIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARD 300 Query: 324 IRFELHLEPVRLTADQDQLNQVWTNLIGNSIKFSKDGGVITVSIRQEFKNVTVRVSDTGI 383 I FEL L+ V++TAD D LNQVWTN++ NSIKFS+D GVI VSI+Q+ KNVT+ +SDTGI Sbjct: 301 IHFELDLQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGI 360 Query: 384 GISLEDQKRIFERFFKADRSHSRKYGGSGMGLAIVKQIISLHQGEIRVESEPGRGATVIV 443 GI L+DQKRIF+RFFKADRSHSRKY GSGMGLAIVKQI+SLHQG+IRV+SEPG+G T IV Sbjct: 361 GIHLDDQKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSEPGQGTTFIV 420 Query: 444 ILPTTTPAD 452 LP TTP D Sbjct: 421 TLPITTPTD 429 >C2XWL9.1 C2XWL9_BACCE Putative uncharacterized protein Length = 429 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 292/429 (68%), Positives = 350/429 (81%), Gaps = 3/429 (0%) Query: 27 VATWVYYDQFNENLKTNILYYGQDIVRMYESFPLQEVDTYLSGMKQL-SYYIRVYDETGQ 85 ++TW++ D+ NEN + N +GQDIVR+Y++FPL+E D ++S MKQL SYYIR+Y+ TGQ Sbjct: 1 MSTWIFEDKLNENAQINSRNFGQDIVRIYKTFPLREADLFVSEMKQLDSYYIRIYEATGQ 60 Query: 86 FQSYGTLNGSRIPTITMDQVKAVLDGEVVQ--VSGVDKSLLGLPLKTETGKKALFVNSVA 143 F+SYG L+G + +TM+Q+K VLDG VVQ +G+ LLGLPLKTE G KA+F+ ++A Sbjct: 61 FKSYGKLHGHKPAPVTMEQLKKVLDGGVVQDTPNGIATVLLGLPLKTEMGTKAIFLEALA 120 Query: 144 PPSATFFIKWLLNFVAFSLIAGSLIILVAAMFLVRPIKKLTKATRQIATGDFSVNLNIKQ 203 PPSA+F KW L F SLIAGSL+ILVA++FLVRPIKKLTKATR+IA+GDF+V LNIKQ Sbjct: 121 PPSASFVTKWALVFATCSLIAGSLLILVASVFLVRPIKKLTKATRRIASGDFNVKLNIKQ 180 Query: 204 KGELGTLARSFEDMMHDLQQLEQMRRDFVSNVSHEVQSPLTSISGYAKALKQVNLAEQER 263 ELGTLARSFE+MMHDLQQLEQMRR+FV+NVSHEVQSPLTSISGYA LKQV+L+E ER Sbjct: 181 TSELGTLARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYER 240 Query: 264 SRYLDIIIAEAERMSKMSDGXXXXXXXXXXXXXXXXXTFSLDEQIRRVIVAVQPQWSDRN 323 SRYLDIIIAEA+RMSKMSD T SLDEQIRR+IVA+QPQWS R+ Sbjct: 241 SRYLDIIIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARD 300 Query: 324 IRFELHLEPVRLTADQDQLNQVWTNLIGNSIKFSKDGGVITVSIRQEFKNVTVRVSDTGI 383 I FEL L+ V++TAD D LNQVWTN++ NSIKFS+D GVI VSI+Q+ KNVT+ +SDTGI Sbjct: 301 IHFELDLQTVKVTADHDLLNQVWTNILRNSIKFSEDTGVINVSIKQDIKNVTILISDTGI 360 Query: 384 GISLEDQKRIFERFFKADRSHSRKYGGSGMGLAIVKQIISLHQGEIRVESEPGRGATVIV 443 GI L+DQKRIFERFFKADRSHSRKY GSGMGLAIVKQI+SLHQG+IRV+SE G+G T IV Sbjct: 361 GIHLDDQKRIFERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIV 420 Query: 444 ILPTTTPAD 452 LP TTP D Sbjct: 421 TLPITTPTD 429 >C3A8J2.1 C3A8J2_BACMY Putative uncharacterized protein Length = 429 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 290/429 (67%), Positives = 351/429 (81%), Gaps = 3/429 (0%) Query: 27 VATWVYYDQFNENLKTNILYYGQDIVRMYESFPLQEVDTYLSGMKQL-SYYIRVYDETGQ 85 ++TW++ D+ NEN + N+ +GQDIVR+Y++FPL+E D ++S MKQL SYYIR+Y+ TGQ Sbjct: 1 MSTWIFEDKLNENAQINLRNFGQDIVRIYKTFPLREADLFVSEMKQLDSYYIRIYEATGQ 60 Query: 86 FQSYGTLNGSRIPTITMDQVKAVLDGEVVQ--VSGVDKSLLGLPLKTETGKKALFVNSVA 143 F+SYG L+G + +TM+Q+K VLDG VVQ +G+ LLGLPLKTE G KA+F+ ++A Sbjct: 61 FKSYGKLHGHKPAPVTMEQLKKVLDGGVVQDTPNGIATVLLGLPLKTEMGTKAIFLEALA 120 Query: 144 PPSATFFIKWLLNFVAFSLIAGSLIILVAAMFLVRPIKKLTKATRQIATGDFSVNLNIKQ 203 PPSA+F KW L F SLIAGSL+ILVA++FLVRPIKKLTKAT++IA+GDF+V LNIKQ Sbjct: 121 PPSASFVTKWALVFATCSLIAGSLLILVASVFLVRPIKKLTKATKRIASGDFNVKLNIKQ 180 Query: 204 KGELGTLARSFEDMMHDLQQLEQMRRDFVSNVSHEVQSPLTSISGYAKALKQVNLAEQER 263 ELGTLARSFE+MMHDLQQLEQMRR+FV+NVSHEVQSPLTSISGYA LKQV+L+E ER Sbjct: 181 TSELGTLARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYER 240 Query: 264 SRYLDIIIAEAERMSKMSDGXXXXXXXXXXXXXXXXXTFSLDEQIRRVIVAVQPQWSDRN 323 SRYLDIIIAEA+RMSKMSD T SLDEQIRR+IVA+QPQWS R+ Sbjct: 241 SRYLDIIIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARD 300 Query: 324 IRFELHLEPVRLTADQDQLNQVWTNLIGNSIKFSKDGGVITVSIRQEFKNVTVRVSDTGI 383 I FEL L+ V++TAD D LNQVWTN++ NSIKFS+D GVI VSI+Q+ KNVT+ +SDTGI Sbjct: 301 IHFELDLQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGI 360 Query: 384 GISLEDQKRIFERFFKADRSHSRKYGGSGMGLAIVKQIISLHQGEIRVESEPGRGATVIV 443 GI L+DQKRIF+RFFKADRSHSRKY GSGMGLAIVKQI+SLHQG+IRV+SE G+G T IV Sbjct: 361 GIHLDDQKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIV 420 Query: 444 ILPTTTPAD 452 LP TTP D Sbjct: 421 TLPITTPTD 429 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,414,925,270 Number of extensions: 94435928 Number of successful extensions: 397289 Number of sequences better than 1.0e-05: 29136 Number of HSP's gapped: 359249 Number of HSP's successfully gapped: 29483 Length of query: 456 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 317 Effective length of database: 1,751,175,118 Effective search space: 555122512406 Effective search space used: 555122512406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)