BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0052.p (182 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7HD24.1 B7HD24_BACC4 Putative transcriptional regulator 185 2e-45 C2RFC1.1 C2RFC1_BACCE Transcriptional regulator 185 2e-45 C3FSJ8.1 C3FSJ8_BACTB Transcriptional regulator 185 2e-45 C3D966.1 C3D966_BACTU Transcriptional regulator 185 2e-45 C3CRC1.1 C3CRC1_BACTU Transcriptional regulator 185 2e-45 >B7HD24.1 B7HD24_BACC4 Putative transcriptional regulator Length = 182 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/173 (52%), Positives = 124/173 (71%), Gaps = 4/173 (2%) Query: 1 VLAAAEIADEQGIEEVTLAAIAARLGVRSPSLYNHINGLQGLRSLLAVHGLELLNAAIAA 60 V AAEIAD GI+EVTLA++A RLG+RSPSLYNH+ GLQ +R L ++G++ L+ + Sbjct: 13 VETAAEIADTNGIQEVTLASLAQRLGIRSPSLYNHVKGLQDVRKHLGIYGIKQLHNKLEE 72 Query: 61 ASEGLKGDAAIHAMGQAYVDFARKHPGLYETTLRAPEEGNSELVRASEQVLSLIIRLLSC 120 A+E + D AIHA+G+AYV F RKHPGLYE T E E+ +A + ++ L +R+L Sbjct: 73 AAEDKRMDEAIHALGEAYVAFVRKHPGLYEATFLRDE----EVRKAGDGIVKLCLRVLQQ 128 Query: 121 YELDAEDELHAVRGLRSLLHGFAALENKGGFGMPLDTNISLNWLISAFIAGIR 173 Y L+ E+ LHA RG RS+ HGFA++E +GGFG+PLD +ISL+ L+ FI G+R Sbjct: 129 YGLEGENALHATRGFRSICHGFASIEQQGGFGLPLDLDISLHVLLETFIKGLR 181 >C2RFC1.1 C2RFC1_BACCE Transcriptional regulator Length = 182 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/173 (52%), Positives = 124/173 (71%), Gaps = 4/173 (2%) Query: 1 VLAAAEIADEQGIEEVTLAAIAARLGVRSPSLYNHINGLQGLRSLLAVHGLELLNAAIAA 60 V AAEIAD GI+EVTLA++A RLG+RSPSLYNH+ GLQ +R L ++G++ L+ + Sbjct: 13 VETAAEIADTNGIQEVTLASLAQRLGIRSPSLYNHVKGLQDVRKNLGIYGIQQLHNKLEE 72 Query: 61 ASEGLKGDAAIHAMGQAYVDFARKHPGLYETTLRAPEEGNSELVRASEQVLSLIIRLLSC 120 A+E + D AIHA+G+AYV F RKHPGLYE T E E+ +A + ++ L +R+L Sbjct: 73 AAEDKQMDEAIHALGEAYVAFVRKHPGLYEATFLRDE----EVRKAGDGIVKLCLRVLQQ 128 Query: 121 YELDAEDELHAVRGLRSLLHGFAALENKGGFGMPLDTNISLNWLISAFIAGIR 173 Y L+ E+ LHA RG RS+ HGFA++E +GGFG+PLD +ISL+ L+ FI G+R Sbjct: 129 YGLEGENALHATRGFRSICHGFASIEQQGGFGLPLDLDISLHVLLETFIKGLR 181 >C3FSJ8.1 C3FSJ8_BACTB Transcriptional regulator Length = 182 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/174 (51%), Positives = 125/174 (71%), Gaps = 4/174 (2%) Query: 1 VLAAAEIADEQGIEEVTLAAIAARLGVRSPSLYNHINGLQGLRSLLAVHGLELLNAAIAA 60 V AAEIAD GI+EVTLA++A RLG+RSPSLYNH+ GLQ +R L ++G++ L+ + Sbjct: 13 VETAAEIADTNGIQEVTLASLAQRLGIRSPSLYNHVKGLQDVRKNLGIYGIKQLHNKLEE 72 Query: 61 ASEGLKGDAAIHAMGQAYVDFARKHPGLYETTLRAPEEGNSELVRASEQVLSLIIRLLSC 120 A+E + D AIHA+G+AYV F RKHPGLYE T E E+ +A ++++ L +++L Sbjct: 73 AAEDKRMDEAIHALGEAYVAFVRKHPGLYEATFLRDE----EVRKAGDEIVKLCLQVLQQ 128 Query: 121 YELDAEDELHAVRGLRSLLHGFAALENKGGFGMPLDTNISLNWLISAFIAGIRS 174 Y L+ E+ LHA RG RS+ HGFA++E +GGFG+PLD +ISL+ L+ FI G+R Sbjct: 129 YGLEGENALHATRGFRSICHGFASIEQQGGFGLPLDLDISLHVLLETFIKGLRE 182 >C3D966.1 C3D966_BACTU Transcriptional regulator Length = 182 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/174 (51%), Positives = 125/174 (71%), Gaps = 4/174 (2%) Query: 1 VLAAAEIADEQGIEEVTLAAIAARLGVRSPSLYNHINGLQGLRSLLAVHGLELLNAAIAA 60 V AAEIAD GI+EVTLA++A RLG+RSPSLYNH+ GLQ +R L ++G++ L+ + Sbjct: 13 VETAAEIADTNGIQEVTLASLAQRLGIRSPSLYNHVKGLQDVRKNLGIYGIKQLHNKLEE 72 Query: 61 ASEGLKGDAAIHAMGQAYVDFARKHPGLYETTLRAPEEGNSELVRASEQVLSLIIRLLSC 120 A+E + D AIHA+G+AYV F RKHPGLYE T E E+ +A ++++ L +++L Sbjct: 73 AAEDKRMDEAIHALGEAYVAFVRKHPGLYEATFLRDE----EVRKAGDEIVKLCLQVLQQ 128 Query: 121 YELDAEDELHAVRGLRSLLHGFAALENKGGFGMPLDTNISLNWLISAFIAGIRS 174 Y L+ E+ LHA RG RS+ HGFA++E +GGFG+PLD +ISL+ L+ FI G+R Sbjct: 129 YGLEGENALHATRGFRSICHGFASIEQQGGFGLPLDLDISLHVLLETFIKGLRE 182 >C3CRC1.1 C3CRC1_BACTU Transcriptional regulator Length = 182 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/174 (51%), Positives = 125/174 (71%), Gaps = 4/174 (2%) Query: 1 VLAAAEIADEQGIEEVTLAAIAARLGVRSPSLYNHINGLQGLRSLLAVHGLELLNAAIAA 60 V AAEIAD GI+EVTLA++A RLG+RSPSLYNH+ GLQ +R L ++G++ L+ + Sbjct: 13 VETAAEIADTNGIQEVTLASLAQRLGIRSPSLYNHVKGLQDVRKNLGIYGIKQLHNKLEE 72 Query: 61 ASEGLKGDAAIHAMGQAYVDFARKHPGLYETTLRAPEEGNSELVRASEQVLSLIIRLLSC 120 A+E + D AIHA+G+AYV F RKHPGLYE T E E+ +A ++++ L +++L Sbjct: 73 AAEDKRMDEAIHALGEAYVAFVRKHPGLYEATFLRDE----EVRKAGDEIVKLCLQVLQQ 128 Query: 121 YELDAEDELHAVRGLRSLLHGFAALENKGGFGMPLDTNISLNWLISAFIAGIRS 174 Y L+ E+ LHA RG RS+ HGFA++E +GGFG+PLD +ISL+ L+ FI G+R Sbjct: 129 YGLEGENALHATRGFRSICHGFASIEQQGGFGLPLDLDISLHVLLETFIKGLRE 182 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,002,482,169 Number of extensions: 37280080 Number of successful extensions: 108636 Number of sequences better than 1.0e-05: 217 Number of HSP's gapped: 108861 Number of HSP's successfully gapped: 217 Length of query: 182 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 55 Effective length of database: 1,864,227,298 Effective search space: 102532501390 Effective search space used: 102532501390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)