BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0051.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BCB9.1 Q2BCB9_9BACI Putative uncharacterized protein 197 5e-49 A6TTW6.1 A6TTW6_ALKMQ Putative uncharacterized protein 115 4e-24 A8MKF3.1 A8MKF3_ALKOO Putative uncharacterized protein 104 7e-21 A9KM30.1 A9KM30_CLOPH Putative uncharacterized protein 89 2e-16 A8SXW3.1 A8SXW3_9FIRM Putative uncharacterized protein 81 6e-14 >Q2BCB9.1 Q2BCB9_9BACI Putative uncharacterized protein Length = 176 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 90/168 (53%), Positives = 118/168 (70%) Query: 13 YEEMKAVIDQLGIVPLAVLIPGHPSVNGLTKAENWHTDTELDPWAWRARFPGEGLAAYGK 72 + E +I ++G++PLA LIPG+P++N +T +WH + DPW WR RF GEG+AAYGK Sbjct: 9 FNEAAVIIKEIGLLPLAPLIPGYPALNTITDPVSWHAGGDSDPWTWRTRFAGEGIAAYGK 68 Query: 73 FIRKKAVLVAREWFPAYAAAAGSTQSLEERYDSGLCSREALTLLQIIRDNQGIETRELRK 132 FI KKAV ++++W P + A G EERY G S+EALTL +IR +GI+TR LRK Sbjct: 69 FISKKAVFISKDWVPLFLAVLGKNDGPEERYHKGELSKEALTLYSLIRSQEGIDTRLLRK 128 Query: 133 LADMKAKEKKTAFDNAVTELQGTLDIVISGVKERHNAEGEKNGWNSTS 180 A+M KE K AFD + ELQG++DIVISG+KE+ N GE NGWNSTS Sbjct: 129 EANMLGKEHKKAFDQGLQELQGSMDIVISGIKEKQNEAGETNGWNSTS 176 >A6TTW6.1 A6TTW6_ALKMQ Putative uncharacterized protein Length = 230 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 1/195 (0%) Query: 1 MSSMEEHGMVTTYEEMKAVIDQLGIVPLAVLIPGHPSVNGLTKAENWHTDTELDPWAWRA 60 MS + + + Y + ++++ LG +PL+ ++ LT E WHT DPW WR Sbjct: 2 MSDYDTNKNIAKYSDFVSMVEDLGFMPLSNNCIDFINLADLTVKEEWHTGLSTDPWLWRL 61 Query: 61 RFPGEGLAAYGKFIRKKAVLVAREWFPAYAAAAGSTQSLEERYDSGLCSREALTLLQIIR 120 R + AAY K KK ++ EW+P + AA +S + Y GL S A + ++ Sbjct: 62 RIEQDSKAAYAKLFDKKPGFISPEWYPKFIAARRKGRSFSQMYSEGLLSNYAKQIYRLFE 121 Query: 121 DNQGIETRELRKLADMKAKEKKTAFDNAVTELQGTLDIVISGVKERHNAEGEKNGWNSTS 180 N+ + E++ L KE +++A++ELQ + I + G K++ +A+GE GW ST+ Sbjct: 122 SNETLAVHEIKSLGGF-TKELNAKYESAMSELQMGMFITVKGTKQKVSAKGEPYGWPSTA 180 Query: 181 FETAGHWMAENHIPE 195 + T W E + E Sbjct: 181 YSTVEAWAGEKLMEE 195 >A8MKF3.1 A8MKF3_ALKOO Putative uncharacterized protein Length = 229 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 1/178 (0%) Query: 10 VTTYEEMKAVIDQLGIVPLAVLIPGHPSVNGLTKAENWHTDTELDPWAWRARFPGEGLAA 69 +T Y E ++++LG + L+ ++ LT E WHTD DPW WR + AA Sbjct: 10 ITEYGEFIDMVEKLGFMTLSNNCINFTNLEDLTLKEQWHTDLPSDPWLWRVSIEKDQKAA 69 Query: 70 YGKFIRKKAVLVAREWFPAYAAAAGSTQSLEERYDSGLCSREALTLLQIIRDNQGIETRE 129 Y K KK ++ EW+P + AA +S E Y GL S A + + + E Sbjct: 70 YAKLFDKKPGFISLEWYPKFFAARRRGRSFSELYSEGLVSNYAKQIYDLFDGQNILAAHE 129 Query: 130 LRKLADMKAKEKKTAFDNAVTELQGTLDIVISGVKERHNAEGEKNGWNSTSFETAGHW 187 ++ L K+ + +++A+ ELQ + I + G K++ +A+GE GW ST++ T W Sbjct: 130 IKSLGGF-TKDLNSKYESAMCELQMGMFITVKGTKQKISAKGEPYGWPSTAYTTVEAW 186 >A9KM30.1 A9KM30_CLOPH Putative uncharacterized protein Length = 240 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 3/140 (2%) Query: 47 WHTDT-ELDPWAWRARFPGEGL-AAYGKFIRKKAVLVAREWFPAYAAAAGSTQSLEERYD 104 WHT+ E DPW WR R E + AY K KK+ + +EW P + + + +SLEE Y Sbjct: 56 WHTENHETDPWEWRMRVLDEQVDIAYAKVFFKKSGYITKEWIPYFLSVRRNGESLEEAYL 115 Query: 105 SGLCSREALTLLQIIRDNQGIETRELRKLADMKAKEKKTAFDNAVTELQGTLDIVISGVK 164 +G S A + ++I ++ + +++KL + +KE F+ A+ ELQ + I + G K Sbjct: 116 AGTISNMAKKIYELIEGHKCLAFHDIKKLGNF-SKEDNYRFEKALIELQMKMYITMCGRK 174 Query: 165 ERHNAEGEKNGWNSTSFETA 184 ++ N GE GWNST F T Sbjct: 175 QKTNRYGEGYGWNSTVFCTT 194 >A8SXW3.1 A8SXW3_9FIRM Putative uncharacterized protein Length = 260 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 22/203 (10%) Query: 12 TYEEMKAVIDQLGIVPLAV-LIPGHPSVNGLTKAENWHTDTELDPWAWRARFPGEGLAAY 70 T +E+ I+++G +PL IPG T+ W D ++DPW WR G AY Sbjct: 23 TVDELIGYIEEVGFLPLFRNEIPGFSVEERTTEKYWWSEDAQMDPWVWREIIARRGDIAY 82 Query: 71 GKFIRKKAVLVAREWFPAYAAAAGSTQSLEERYDSGLCSREALTLLQIIRDNQGIE---- 126 GKF KA ++++WFP +A S + R+D L S ++ + D++ E Sbjct: 83 GKFFHNKAGFISKKWFPYFANYRRSGYDFDARWDDELASFRQKKIMDLFMDDRIDEESDA 142 Query: 127 ----------------TRELRKLADMKAKEKKTAFDNAVTELQGTLDIVISGVKERHNAE 170 + +++KLA K+ + F+ +T+LQ + ++R N + Sbjct: 143 EFAAEKPESLYDTELLSFDIKKLAGF-GKDGEKGFEGTMTQLQMQTYLCACDFRKRVNKK 201 Query: 171 GEKNGWNSTSFETAGHWMAENHI 193 G + GWN + +H+ Sbjct: 202 GAEYGWNVAVYSMPEKLWGYDHV 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.130 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,410,346,334 Number of extensions: 57232787 Number of successful extensions: 138030 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 138021 Number of HSP's successfully gapped: 11 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)