BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0039.p (410 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDR5.1 B3KDR5_9BACI Major facilitator superfamily MFS_1 568 e-160 C3BT48.1 C3BT48_9BACI Metabolite transport protein yceI 471 e-131 C3BBF3.1 C3BBF3_BACMY Metabolite transport protein yceI 471 e-131 C3ATT6.1 C3ATT6_BACMY Metabolite transport protein yceI 471 e-131 C2Y2C7.1 C2Y2C7_BACCE Metabolite transport protein yceI 469 e-130 >B3KDR5.1 B3KDR5_9BACI Major facilitator superfamily MFS_1 Length = 407 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 292/411 (71%), Positives = 329/411 (80%), Gaps = 8/411 (1%) Query: 1 MKDISLLRNPKQRKLLFSAGLSWMFDAMDVGMISFVVAALAKEWGLGPERIGYLTSINSI 60 M ++ LL+ PK+RKLLFSAG SWMFDAMDVGMISFVVAALA EW L +++G LTS SI Sbjct: 1 MGNMQLLKEPKRRKLLFSAGASWMFDAMDVGMISFVVAALAAEWSLSSQQVGILTSTTSI 60 Query: 61 GMAVGXXXXGEAAGILADRFGRKSVLLWTXXXXXXXXXXXXXXXXYAMLCVLRFVAGFGL 120 GM G AG LAD++GRK++LLWT + MLC++RF+AGFGL Sbjct: 61 GMVFGAAM----AGFLADKYGRKNILLWTLLIFSIASGLSALATGFVMLCLMRFIAGFGL 116 Query: 121 GGELPVASTLVSESMPVKERGRAVVLLESFWAVGWIVSALIAYFVIPDYGWRVAFAIGAV 180 GGELPVASTLVSESMPV ERGRAVVLLESFWA GWI+SALIAYFVIPDYGWR AF IGA+ Sbjct: 117 GGELPVASTLVSESMPVHERGRAVVLLESFWAAGWILSALIAYFVIPDYGWRTAFVIGAL 176 Query: 181 PALYALYLRRAIDDSPRFAEIRKKAPVPLR--SRIATVWSGEYRRSTIMLWILWFTVVFS 238 PA YALYLRRAI+DSPR+ E + KA L R+A+VWS E+RR++IMLWILWFTVVFS Sbjct: 177 PAFYALYLRRAIEDSPRYIEQKAKAVRKLTFGQRVASVWSVEHRRTSIMLWILWFTVVFS 236 Query: 239 YYGMFLWLPTVMVIKGFSLVKSFEYVLIMTLAQLPGYFTAAYFIEKFGRKFVLVIYLLLT 298 YYGMFLWLPTVMV KGFSLV+SF+YVLIMTLAQLPGYFTAAYFIEKFGRKFVLV YL+LT Sbjct: 237 YYGMFLWLPTVMVDKGFSLVRSFQYVLIMTLAQLPGYFTAAYFIEKFGRKFVLVTYLVLT 296 Query: 299 XXXXXXXXXXNSTTEGMLMAAGICLSFFNLGAWGGMYAYTPELYPTAIRSTGAGLATSFG 358 N TEG L+AAGI LSFFNLGAWGG+YAY+PELYPT +RSTG GLATSFG Sbjct: 297 ALSAIWFGYAN--TEGSLLAAGISLSFFNLGAWGGLYAYSPELYPTKVRSTGVGLATSFG 354 Query: 359 RIGGIIAPTLVGVMVGNAVGIGTIFMLFFVTIIIGALAVLFLGKETKGLEL 409 RIGG+IAP LVGV+ N I IF++FFVTI+IGAL VL LGKETKGLEL Sbjct: 355 RIGGVIAPLLVGVLKQNGTRIEIIFVMFFVTILIGALGVLVLGKETKGLEL 405 >C3BT48.1 C3BT48_9BACI Metabolite transport protein yceI Length = 399 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 247/409 (60%), Positives = 297/409 (72%), Gaps = 11/409 (2%) Query: 1 MKDISLLRNPKQRKLLFSAGLSWMFDAMDVGMISFVVAALAKEWGLGPERIGYLTSINSI 60 M DI + +RKLL AGL W+FDAMDVGM+SFV+ AL KEWG+ + +G++ SINSI Sbjct: 1 MGDI---KEISKRKLLGIAGLGWLFDAMDVGMLSFVIVALQKEWGISSQEMGWIGSINSI 57 Query: 61 GMAVGXXXXGEAAGILADRFGRKSVLLWTXXXXXXXXXXXXXXXXYAMLCVLRFVAGFGL 120 GMAVG G ILAD+ GRKSV + T AM +LRF+ G GL Sbjct: 58 GMAVGALLFG----ILADKLGRKSVFIMTLLLFSIGSGLTALTTTLAMFLILRFLIGMGL 113 Query: 121 GGELPVASTLVSESMPVKERGRAVVLLESFWAVGWIVSALIAYFVIPDYGWRVAFAIGAV 180 GGELPVASTLVSES+ ERGR VVLLESFWAVGW+++ALI+YFVIP YGW+VA + A+ Sbjct: 114 GGELPVASTLVSESVEAHERGRIVVLLESFWAVGWLIAALISYFVIPKYGWQVAMVLSAI 173 Query: 181 PALYALYLRRAIDDSPRFAEIRKKAPVPLRSRIATVWSGEYRRSTIMLWILWFTVVFSYY 240 PALYALYLR + DSP+F ++ K V + I VWSGEYR++TIMLWILWF VVFSYY Sbjct: 174 PALYALYLRWNLPDSPQFEKVENKQSVI--TNIKAVWSGEYRKATIMLWILWFCVVFSYY 231 Query: 241 GMFLWLPTVMVIKGFSLVKSFEYVLIMTLAQLPGYFTAAYFIEKFGRKFVLVIYLLLTXX 300 GMFLWLP+VMV+KGFSL+KSF+YVLIMTLAQLPGYFTAA+FIE+ GRKFVLV YL+ T Sbjct: 232 GMFLWLPSVMVLKGFSLIKSFQYVLIMTLAQLPGYFTAAWFIERLGRKFVLVTYLIGTAC 291 Query: 301 XXXXXXXXNSTTEGMLMAAGICLSFFNLGAWGGMYAYTPELYPTAIRSTGAGLATSFGRI 360 S T L+ AG+ LSFFNLGAWG +YAYTPE YPT IR TGAG+A +FGRI Sbjct: 292 SAYVFGVAESLTT--LVIAGMLLSFFNLGAWGALYAYTPEQYPTVIRGTGAGMAAAFGRI 349 Query: 361 GGIIAPTLVGVMVGNAVGIGTIFMLFFVTIIIGALAVLFLGKETKGLEL 409 GGI+ P LVG +V + + IF +F +I+IG LAV+ LG+ETK EL Sbjct: 350 GGILGPLLVGYLVASQASLSLIFTIFCGSILIGVLAVVMLGQETKQQEL 398 >C3BBF3.1 C3BBF3_BACMY Metabolite transport protein yceI Length = 399 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 247/409 (60%), Positives = 297/409 (72%), Gaps = 11/409 (2%) Query: 1 MKDISLLRNPKQRKLLFSAGLSWMFDAMDVGMISFVVAALAKEWGLGPERIGYLTSINSI 60 M DI + +RKLL AGL W+FDAMDVGM+SFV+ AL KEWG+ + +G++ SINSI Sbjct: 1 MGDI---KEISKRKLLGIAGLGWLFDAMDVGMLSFVIVALQKEWGISSQEMGWIGSINSI 57 Query: 61 GMAVGXXXXGEAAGILADRFGRKSVLLWTXXXXXXXXXXXXXXXXYAMLCVLRFVAGFGL 120 GMAVG G ILAD+ GRKSV + T AM +LRF+ G GL Sbjct: 58 GMAVGALLFG----ILADKLGRKSVFIMTLLLFSIGSGLTALTTTLAMFLILRFLIGMGL 113 Query: 121 GGELPVASTLVSESMPVKERGRAVVLLESFWAVGWIVSALIAYFVIPDYGWRVAFAIGAV 180 GGELPVASTLVSES+ ERGR VVLLESFWAVGW+++ALI+YFVIP YGW+VA + A+ Sbjct: 114 GGELPVASTLVSESVEAHERGRIVVLLESFWAVGWLIAALISYFVIPKYGWQVAMVLSAI 173 Query: 181 PALYALYLRRAIDDSPRFAEIRKKAPVPLRSRIATVWSGEYRRSTIMLWILWFTVVFSYY 240 PALYALYLR + DSP+F ++ K V + I VWSGEYR++TIMLWILWF VVFSYY Sbjct: 174 PALYALYLRWNLPDSPQFEKVENKQSVI--TNIKAVWSGEYRKATIMLWILWFCVVFSYY 231 Query: 241 GMFLWLPTVMVIKGFSLVKSFEYVLIMTLAQLPGYFTAAYFIEKFGRKFVLVIYLLLTXX 300 GMFLWLP+VMV+KGFSL+KSF+YVLIMTLAQLPGYFTAA+FIE+ GRKFVLV YL+ T Sbjct: 232 GMFLWLPSVMVLKGFSLIKSFQYVLIMTLAQLPGYFTAAWFIERLGRKFVLVTYLIGTAC 291 Query: 301 XXXXXXXXNSTTEGMLMAAGICLSFFNLGAWGGMYAYTPELYPTAIRSTGAGLATSFGRI 360 S T L+ AG+ LSFFNLGAWG +YAYTPE YPT IR TGAG+A +FGRI Sbjct: 292 SAYVFGVAESLTT--LVIAGMLLSFFNLGAWGALYAYTPEQYPTVIRGTGAGMAAAFGRI 349 Query: 361 GGIIAPTLVGVMVGNAVGIGTIFMLFFVTIIIGALAVLFLGKETKGLEL 409 GGI+ P LVG +V + + IF +F +I+IG LAV+ LG+ETK EL Sbjct: 350 GGILGPLLVGYLVASQASLSLIFTIFCGSILIGVLAVVMLGQETKQQEL 398 >C3ATT6.1 C3ATT6_BACMY Metabolite transport protein yceI Length = 399 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 247/409 (60%), Positives = 297/409 (72%), Gaps = 11/409 (2%) Query: 1 MKDISLLRNPKQRKLLFSAGLSWMFDAMDVGMISFVVAALAKEWGLGPERIGYLTSINSI 60 M DI + +RKLL AGL W+FDAMDVGM+SFV+ AL KEWG+ + +G++ SINSI Sbjct: 1 MGDI---KEISKRKLLGIAGLGWLFDAMDVGMLSFVIVALQKEWGISSQEMGWIGSINSI 57 Query: 61 GMAVGXXXXGEAAGILADRFGRKSVLLWTXXXXXXXXXXXXXXXXYAMLCVLRFVAGFGL 120 GMAVG G ILAD+ GRKSV + T AM +LRF+ G GL Sbjct: 58 GMAVGALLFG----ILADKLGRKSVFIMTLLLFSIGSGLTALTTTLAMFLILRFLIGMGL 113 Query: 121 GGELPVASTLVSESMPVKERGRAVVLLESFWAVGWIVSALIAYFVIPDYGWRVAFAIGAV 180 GGELPVASTLVSES+ ERGR VVLLESFWAVGW+++ALI+YFVIP YGW+VA + A+ Sbjct: 114 GGELPVASTLVSESVEAHERGRIVVLLESFWAVGWLIAALISYFVIPKYGWQVAMVLSAI 173 Query: 181 PALYALYLRRAIDDSPRFAEIRKKAPVPLRSRIATVWSGEYRRSTIMLWILWFTVVFSYY 240 PALYALYLR + DSP+F ++ K V + I VWSGEYR++TIMLWILWF VVFSYY Sbjct: 174 PALYALYLRWNLPDSPQFEKVENKQSVI--TNIKAVWSGEYRKATIMLWILWFCVVFSYY 231 Query: 241 GMFLWLPTVMVIKGFSLVKSFEYVLIMTLAQLPGYFTAAYFIEKFGRKFVLVIYLLLTXX 300 GMFLWLP+VMV+KGFSL+KSF+YVLIMTLAQLPGYFTAA+FIE+ GRKFVLV YL+ T Sbjct: 232 GMFLWLPSVMVLKGFSLIKSFQYVLIMTLAQLPGYFTAAWFIERLGRKFVLVTYLIGTAC 291 Query: 301 XXXXXXXXNSTTEGMLMAAGICLSFFNLGAWGGMYAYTPELYPTAIRSTGAGLATSFGRI 360 S T L+ AG+ LSFFNLGAWG +YAYTPE YPT IR TGAG+A +FGRI Sbjct: 292 SAYVFGVAESLTT--LVIAGMLLSFFNLGAWGALYAYTPEQYPTVIRGTGAGMAAAFGRI 349 Query: 361 GGIIAPTLVGVMVGNAVGIGTIFMLFFVTIIIGALAVLFLGKETKGLEL 409 GGI+ P LVG +V + + IF +F +I+IG LAV+ LG+ETK EL Sbjct: 350 GGILGPLLVGYLVASQASLSLIFTIFCGSILIGVLAVVMLGQETKQQEL 398 >C2Y2C7.1 C2Y2C7_BACCE Metabolite transport protein yceI Length = 399 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 245/406 (60%), Positives = 298/406 (73%), Gaps = 8/406 (1%) Query: 4 ISLLRNPKQRKLLFSAGLSWMFDAMDVGMISFVVAALAKEWGLGPERIGYLTSINSIGMA 63 +S ++ +RKLL AGL W+FDAMDVGM+SFV+ AL K+WGL + +G++ S+NSIGMA Sbjct: 1 MSKVKEISKRKLLGIAGLGWLFDAMDVGMLSFVIVALQKDWGLSTQEMGWIGSVNSIGMA 60 Query: 64 VGXXXXGEAAGILADRFGRKSVLLWTXXXXXXXXXXXXXXXXYAMLCVLRFVAGFGLGGE 123 VG G IL+D+ GRKSV + T +AM VLRF+ G GLGGE Sbjct: 61 VGALLFG----ILSDKIGRKSVFIITLLLFSIGSGLTALTTTFAMFLVLRFLIGMGLGGE 116 Query: 124 LPVASTLVSESMPVKERGRAVVLLESFWAVGWIVSALIAYFVIPDYGWRVAFAIGAVPAL 183 LPVASTLVSES+ ERG+ VVLLESFWA GW+++ALI+YFVIP YGW VA I AVPAL Sbjct: 117 LPVASTLVSESVEAHERGKIVVLLESFWAGGWLIAALISYFVIPKYGWEVAMVISAVPAL 176 Query: 184 YALYLRRAIDDSPRFAEIRKKAPVPLRSRIATVWSGEYRRSTIMLWILWFTVVFSYYGMF 243 YALYLR + DSPRF ++ K+ V I +VWSGEYR++TIMLWILWF VVFSYYGMF Sbjct: 177 YALYLRWNLPDSPRFQKVAKRPSVI--ENIKSVWSGEYRKATIMLWILWFCVVFSYYGMF 234 Query: 244 LWLPTVMVIKGFSLVKSFEYVLIMTLAQLPGYFTAAYFIEKFGRKFVLVIYLLLTXXXXX 303 LWLP+VMV+KGFSL+KSF+YVLIMTLAQLPGYFTAA+FIE+ GRKFVLV YL+ T Sbjct: 235 LWLPSVMVLKGFSLIKSFQYVLIMTLAQLPGYFTAAWFIERLGRKFVLVTYLIGTACSAY 294 Query: 304 XXXXXNSTTEGMLMAAGICLSFFNLGAWGGMYAYTPELYPTAIRSTGAGLATSFGRIGGI 363 +S T L+ AG+ LSFFNLGAWG +YAYTPE YPT IR TG G+A +FGRIGGI Sbjct: 295 VFGIADSLTA--LIVAGMLLSFFNLGAWGALYAYTPEQYPTTIRGTGTGMAAAFGRIGGI 352 Query: 364 IAPTLVGVMVGNAVGIGTIFMLFFVTIIIGALAVLFLGKETKGLEL 409 + P LVG +V + + IF +F +I+IGALAV+ LG+ETK EL Sbjct: 353 LGPLLVGYLVASQASLSLIFTIFCGSILIGALAVVILGQETKQREL 398 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,198,474,715 Number of extensions: 86509614 Number of successful extensions: 436575 Number of sequences better than 1.0e-05: 8036 Number of HSP's gapped: 424692 Number of HSP's successfully gapped: 8402 Length of query: 410 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 272 Effective length of database: 1,760,596,133 Effective search space: 478882148176 Effective search space used: 478882148176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)