BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0038.p (565 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3C1.1 B3K3C1_9BACI Putative uncharacterized protein 303 2e-80 Q24ZT3.1 Q24ZT3_DESHY Putative uncharacterized protein 231 1e-58 B8I964.1 B8I964_CLOCE Putative uncharacterized protein 189 5e-46 A6PN71.1 A6PN71_9BACT Putative uncharacterized protein 103 7e-20 B6G949.1 B6G949_9ACTN Putative uncharacterized protein 99 1e-18 >B3K3C1.1 B3K3C1_9BACI Putative uncharacterized protein Length = 633 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 162/328 (49%), Positives = 220/328 (67%), Gaps = 6/328 (1%) Query: 67 TTTESQFVVRARELVDHKETASLFVPFKSYWPTYGHMTGAQSRWYFFWRDEVRQGRYPKT 126 T E QFV +AREL H E + FV FKSYWPTY M Q +WYF+WR+EVR GRYP T Sbjct: 84 VTKEQQFVQKARELAWHVEGETPFVAFKSYWPTYDQMASDQFKWYFYWREEVRSGRYPDT 143 Query: 127 DLSYIFLHVYELINGVGWDEPQDGYRQLNLLWEAYRDQYKRLDQYLGGWIADFSFVHHLD 186 DLSY+F++ YELI+GVGW +P GY + W AYR +Y +LD YL W+ DF VH LD Sbjct: 144 DLSYLFVYFYELIHGVGWSDPLQGYALMEQAWTAYRKRYAKLDTYLREWLYDFMIVHGLD 203 Query: 187 VPLSGIVAR-SRGLAGDLAELELMRCLTAAPEQLTFEVLTVMSDYDISKSKFYTGEGKTA 245 +P+ R R L+ +L E E R + P +L++E+L + DYD+ KS+FY +G+ Sbjct: 204 MPIRETYQRFPRVLSAELKEKEWKRRFSLQPVELSWELLLDLLDYDVEKSRFYQEKGRKD 263 Query: 246 AERYIPQVVALIDAYVARKHGSNLIGMFPPGPAVVRERYLFRSAVYDISLYGYSVLVPVV 305 ERY P+V+AL+D+Y A+ G LI F P P V+ R+LFRSAVYD LYG +V++ VV Sbjct: 264 LERYAPKVIALVDSYWAKMKGQRLIDRFQPRPRQVK-RHLFRSAVYDHGLYGRTVVLTVV 322 Query: 306 RISKSPPLRSLITRLFRLTENKLRELLGYRGRLK-DIKVDADMEDLITRFLQREFR---K 361 +S+ PLRS IT L RLTENKLREL G++GRL+ V+ ++E++ITR+L++E + + Sbjct: 323 SLSEHAPLRSYITGLVRLTENKLRELRGFKGRLRGAEAVEPEVEEIITRYLKKEIQEQME 382 Query: 362 AEQLEKGPAVVIDAKKVEQLQNDSDIVR 389 AE+ + P V ID K+ +LQ +SD VR Sbjct: 383 AERKQSLPEVQIDTGKLRRLQRESDQVR 410 >Q24ZT3.1 Q24ZT3_DESHY Putative uncharacterized protein Length = 1230 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 127/322 (39%), Positives = 184/322 (57%), Gaps = 6/322 (1%) Query: 72 QFVVRARELVDHKETASLFVPFKSYWPTYGHMTGAQSRWYFFWRDEVRQGRYPKTDLSYI 131 +F+ A++LV+H E + F+PF SYWPTY M+ Q +WYF+WR +VR+G YP TDLSYI Sbjct: 679 RFLQEAKQLVEHVEHRAKFIPFMSYWPTYSSMSMEQQKWYFYWRGQVRKGSYPDTDLSYI 738 Query: 132 FLHVYELINGVGWDEPQDGYRQLNLLWEAYRDQYKRLDQYLGGWIADFSFVHHLDVPLSG 191 F+HVYELIN VG PQDGY+QL LW YR++Y +LD YL W+ D+ + +V L Sbjct: 739 FVHVYELINNVGVQNPQDGYQQLFNLWINYRERYPKLDHYLVDWLTDYVAMFGCNVDLLE 798 Query: 192 IVAR--SRGLAGDLAELELMRCLTAAPEQLTFEVLTVMSDYDISKSKFYTGEGKTAAERY 249 + + D + L + +L+ E++ ++DY I +SKFY G+T Y Sbjct: 799 VYQHLDHKNADPDYLNIILTGYKKSGIGRLSLELINQIADYSIFRSKFYNESGQTLLVEY 858 Query: 250 IPQVVALIDAYVARKHGSNLIGMFPPGPAVVRERYLFRSAVYDISLYGYSVLVPVVRISK 309 IP+ + ++A++ KH ++ +F P +R FRSAVY + + + V K Sbjct: 859 IPKTIEKVNAFLLEKHHGGILDLFQPSQREKIQREPFRSAVYCYKV-SQQITLETVPYIK 917 Query: 310 SPPLRSLITRLFRLTENKLRELLGYRGRLKDIKVDADMEDLITRFLQREFRKAEQLEKGP 369 PLR +T + + TENKLRE GY GRL+ ++ +++ I FL E E K P Sbjct: 918 HKPLREFLTAVIKHTENKLREAKGYNGRLRGYVLEPEIKIWIDDFLASEIEGLEPATK-P 976 Query: 370 AVVI--DAKKVEQLQNDSDIVR 389 ++ I D KV QL DSD VR Sbjct: 977 SLKIELDTSKVFQLIEDSDKVR 998 >B8I964.1 B8I964_CLOCE Putative uncharacterized protein Length = 1201 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 27/331 (8%) Query: 72 QFVVRARELVDHKETASLFVPFKSYWPTYGHMTGAQSRWYFFWRDEVRQGRYPKTDLSYI 131 +F+ RAR +K ++ +VPF WPTY M+ Q WYF+WR++VR G Y +TDLSY+ Sbjct: 657 RFLERARSFEHYKADSAKYVPFSCEWPTYDSMSIHQREWYFWWREQVRMGLYLETDLSYV 716 Query: 132 FLHVYELINGVGWDEPQDGYRQLNLLWEAYRDQYKRLDQYLGGWIADFSFVHHLDVPLSG 191 +++YEL+N VG +P DGY +L +WE YR++Y +LD +L WI D+ ++ D P+ Sbjct: 717 LVYIYELVNLVGVSDPIDGYEKLYTIWEIYRNKYLKLDFHLLEWIMDYIIIN--DCPIDF 774 Query: 192 IVARSRGLAGDLAELELMRC-LTAAPEQL----TFEVLTVMS--------DYDISKSKFY 238 I ++ + + RC P+ L T E L+ MS DY + KSKFY Sbjct: 775 I---------EILKDNISRCPYFHLPDFLIPYYTDEELSKMSTTLIARFIDYPLKKSKFY 825 Query: 239 TGEGKTAAERYIPQVVALIDAYVARKHGSNLIGMFPPGPAVVRERYLFRSAVYDISLYGY 298 TG + ++YIP+ +A ++ Y+ + G + ++ P R F+ AVY G Sbjct: 826 TGIHQELLDKYIPRAIAEVNFYLKDRFGKGIFELYKPTKFQKIIRVPFQGAVY--GRRGE 883 Query: 299 SVLV-PVVRISKSPPLRSLITRLFRLTENKLRELLGYRGRLKDIKVDADMEDLITRFLQR 357 L V+ S+ PLR +T + + TENK+REL + G+L+ ++ D++ +I + +Q+ Sbjct: 884 KELTATVIPYSQHGPLREFLTSVVKHTENKIRELKKFSGKLQGYTLERDIQRIIDKLIQK 943 Query: 358 EFRKAEQLEKGPAVVIDAKKVEQLQNDSDIV 388 + P + ID KV+QL DSD V Sbjct: 944 TAVSEIMTKAKPKINIDTSKVKQLIKDSDQV 974 >A6PN71.1 A6PN71_9BACT Putative uncharacterized protein Length = 477 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 18/205 (8%) Query: 93 FKSYWPTYGHMTGAQSRWYFFWRDEVRQGRYPKTDLSYIFLHVYELINGVGWDEPQDGYR 152 F Y+PTY M AQ R YF WR +R+G +T LS++F+++YEL+NG+G P++G+R Sbjct: 77 FVRYFPTYQAMNDAQLRGYFSWRTRIRRGEINRTSLSFVFVYLYELLNGIGVKSPEEGFR 136 Query: 153 QLNLLWEAYRDQYKRLDQYLGGWIADFSFVHHLDVPLSGIVARSRGLAGDLAELELMRCL 212 L W +YR+ ++D+Y+ W+ D+ ++LD R L +L + E R + Sbjct: 137 TLKAFWLSYREIEPKIDRYVRLWLRDYVVYYNLD----------RSLLDELGDAEADRAV 186 Query: 213 TAAPEQL------TFEVLTVMSDYDISKSKFYTGEGKTAAERYIPQVVALIDAYVARKHG 266 F L +S Y++ S F+ + +R + +V A + AY R Sbjct: 187 LVLLNSREHDAGEVFAALNSLSSYNLENSGFFRRHPEE-VKRVVCRVFAELSAYYDRNRK 245 Query: 267 SNLIGMFPPGPAVVRERYLFRSAVY 291 ++L F G + +F SAV+ Sbjct: 246 NSLCRKF-FGESQTGSYTMFSSAVF 269 >B6G949.1 B6G949_9ACTN Putative uncharacterized protein Length = 645 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 51/321 (15%) Query: 80 LVDHKETASLFVPFKSYWPTYGHMTGAQSRWYFFWRDEVRQGRYPKTDLSYIFLHVYELI 139 + D ++ FKSY+PTY M+ Q R YF WR VR+G +T LS+ ++++YELI Sbjct: 107 MADFEDDCPYHGTFKSYFPTYNAMSDRQLRGYFTWRAAVRRGIVEETSLSFAYVYLYELI 166 Query: 140 NGVGWDEPQDGYRQLNLLWEAYRDQYKRLDQYLGGWIADFSFVHHLDVPL---SGIVARS 196 NG+G +P +G+R L W +YR+ +D++ W+ D+ H L L ++ Sbjct: 167 NGIGVADPHEGFRALESFWRSYREIAPEIDRFASVWLQDYVVYHGLPAELLEPYKALSFD 226 Query: 197 RGLAGDLAELELMRCLTA-AP-----------------EQLTFEVLTVMSDYDISKSKFY 238 R L A E R + A AP EQ F L +S Y ++ S+ Sbjct: 227 RSLMTLRAADEHARAIAAQAPKRKRGISALPLPARASEEQELFCALDALSTYHLAGSRL- 285 Query: 239 TGEGKTAAERYIPQVVAL-IDAYVARKHGSNLIGMFPPGPAVVRERYLFRSAV-YDISLY 296 + + A R++ V + + +Y R+ S+LI + G V +F SA+ ++ + Sbjct: 286 -NKQQPDALRHVACAVFVRMSSYYQRQRSSSLIESW-FGEEVSLSYTMFGSAMFFEPEPH 343 Query: 297 GYSV--LVPVVRI----------------SKSPPLRSLITRLFRLTENKLRELLGYRGRL 338 +V L P+ R SKSP L SL+ R + LRE LG+ L Sbjct: 344 ANAVYELDPIHRYRCDQGRWTCERFHGSRSKSPKLGSLM----RSVDRCLREALGFEHPL 399 Query: 339 KDIKVDADMEDLITRFLQREF 359 KV + +F+ E Sbjct: 400 ---KVTGKTPKYVQKFIDEEI 417 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,049,374,932 Number of extensions: 120007673 Number of successful extensions: 267431 Number of sequences better than 1.0e-05: 26 Number of HSP's gapped: 267416 Number of HSP's successfully gapped: 26 Length of query: 565 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 424 Effective length of database: 1,732,333,088 Effective search space: 734509229312 Effective search space used: 734509229312 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)