BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0036.p (453 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3C3.1 B3K3C3_9BACI DEAD/DEAH box helicase domain protein 697 0.0 Q24ZT1.1 Q24ZT1_DESHY Putative uncharacterized protein 463 e-128 B8I966.1 B8I966_CLOCE DEAD/DEAH box helicase domain protein 456 e-126 B2J135.1 B2J135_NOSP7 DEAD/DEAH box helicase domain protein 449 e-124 Q3M6X2.1 Q3M6X2_ANAVT DEAD/DEAH box helicase-like 443 e-122 >B3K3C3.1 B3K3C3_9BACI DEAD/DEAH box helicase domain protein Length = 739 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/404 (82%), Positives = 365/404 (90%), Gaps = 2/404 (0%) Query: 1 MSSNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFP 60 MS+NPF RLAPFI+EFIYK RW+TLREAQV+ACRVLFDTP+HLLIASGTASGKTEAAFFP Sbjct: 1 MSANPFSRLAPFIQEFIYKKRWDTLREAQVEACRVLFDTPNHLLIASGTASGKTEAAFFP 60 Query: 61 ALTQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQ 120 ALT+LY PS+SVGILYI PLKALINDQF R+ DLL+EG +PVWHWHGDV QA+KTKLMQ Sbjct: 61 ALTELYNMPSSSVGILYIGPLKALINDQFERITDLLKEGQVPVWHWHGDVSQAEKTKLMQ 120 Query: 121 NPSGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISR 180 PSGVLQITPESLEGLLMNRPNAIPALF DLR++I+DEVHAFMGADRGIQVLSQL RI R Sbjct: 121 KPSGVLQITPESLEGLLMNRPNAIPALFQDLRYVIIDEVHAFMGADRGIQVLSQLTRIER 180 Query: 181 MAGCHPRRIGLSATLSDYASVTEWLAAGTRESVEVSAPQGGRKLRLSVEHFSFPDARDEV 240 MA C PRRIGLSATLSDY + WL AGT+ +VEV +PQGGRKLRLSVEHFSFPDARDE Sbjct: 181 MASCSPRRIGLSATLSDYETAAGWLGAGTKHAVEVVSPQGGRKLRLSVEHFSFPDARDEK 240 Query: 241 QAEHLERARQAYYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRGERDVFHVH 300 QAE LE AR+AYY F+YD+THLKKAL+FTNSR+DAE LE R+AAKR +RDVFHVH Sbjct: 241 QAEQLELARKAYYDFVYDNTHLKKALVFTNSRSDAELTTLE--LRRIAAKREQRDVFHVH 298 Query: 301 HGSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSCASFVQRLG 360 HGSISAMLREE EAALR+GPGPAVAAATLTLELGIDLGELERV+QLGAPYSC+SFVQRLG Sbjct: 299 HGSISAMLREEAEAALREGPGPAVAAATLTLELGIDLGELERVIQLGAPYSCSSFVQRLG 358 Query: 361 RSGRRGDAASEMIFVTPEEEDEEAQLPARMPWTLLRAIAVIELY 404 RSGRRGD ASEM+F+ PE+EDEEA LPARMPW LLRAIAVIELY Sbjct: 359 RSGRRGDQASEMMFLCPEDEDEEAMLPARMPWMLLRAIAVIELY 402 >Q24ZT1.1 Q24ZT1_DESHY Putative uncharacterized protein Length = 720 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 230/405 (56%), Positives = 293/405 (72%), Gaps = 14/405 (3%) Query: 1 MSSNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFP 60 MS NPFYRLAPFI+E+IYK++W LR QV+ACRV+F++ HLL+A+GTASGKTEAAF P Sbjct: 1 MSGNPFYRLAPFIQEYIYKHQWTELRAVQVEACRVIFESESHLLLAAGTASGKTEAAFLP 60 Query: 61 ALTQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQ 120 +T L+E P S+ LYI PLKALINDQF RL+DLL E ++PVWHWHGDV + K K+++ Sbjct: 61 VITLLHESPPLSISALYIGPLKALINDQFARLSDLLEEAHLPVWHWHGDVSPSHKNKMLK 120 Query: 121 NPSGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISR 180 NP G+LQITPESLE +L+NR I LF DLRFI++DEVHAFMG DRG Q+L QL R++R Sbjct: 121 NPQGILQITPESLESMLINRSTDILRLFADLRFIVIDEVHAFMGTDRGSQILCQLERLTR 180 Query: 181 MAGCHPRRIGLSATLSDYASVTEWLAAGT-RESVEVSAPQGGRKLRLSVEHFSFPDARDE 239 M G PRRIGLSATL DYA +WL++GT + ++ G +K+RL+VEHF DE Sbjct: 181 MIGHQPRRIGLSATLGDYAIAEKWLSSGTEKRTITPKVQVGQQKVRLAVEHFYL----DE 236 Query: 240 VQAEHLERARQAYYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRGERDVFHV 299 E+ Y +I+D + +K LIFTN+R AE + +LA + DV+HV Sbjct: 237 ------EKKMSLYDQYIFDQSKNRKCLIFTNNREQAEYTV--ATLRQLAEGKRMPDVYHV 288 Query: 300 HHGSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSCASFVQRL 359 HHGSISA LRE E A+++ P P V AAT+TLELGIDLG LER++QL P+S +SFVQRL Sbjct: 289 HHGSISAPLREAAEKAMKESPEPCVTAATITLELGIDLGYLERIIQLETPFSVSSFVQRL 348 Query: 360 GRSGRRGDAASEMIFVTPEEEDEEAQLPARMPWTLLRAIAVIELY 404 GRSGRRG SEM V E+E+ LP ++PW+LL+AIA+I+LY Sbjct: 349 GRSGRRG-TPSEMWLVCKEDEEVNDLLPNQLPWSLLQAIAIIQLY 392 >B8I966.1 B8I966_CLOCE DEAD/DEAH box helicase domain protein Length = 741 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/416 (54%), Positives = 300/416 (72%), Gaps = 18/416 (4%) Query: 2 SSNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPA 61 +++ FYRLAPFI+E+IY + W LR+ Q++AC+V+FDT HLL+A+GTASGKTEAAF P Sbjct: 3 NNDAFYRLAPFIREYIYTHGWTELRDVQLEACKVIFDTDDHLLLAAGTASGKTEAAFLPV 62 Query: 62 LTQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQN 121 LTQL+E PS+++G+LYI PLKALINDQF RL+DLL+E +IPVWHWHGDV Q+ K + M++ Sbjct: 63 LTQLHEKPSSTIGVLYIGPLKALINDQFLRLDDLLKEVDIPVWHWHGDVSQSHKNRFMKD 122 Query: 122 PSGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRM 181 P G+LQITPESLE +++NR N I +F DLRFII+DEVH FM +DRG QVL L R+SR Sbjct: 123 PRGILQITPESLESMIINRDNEISRIFGDLRFIIIDEVHVFMESDRGRQVLCLLERLSRY 182 Query: 182 AGCHPRRIGLSATLSDYASVTEWLAAGTRESVEVSAPQGG-RKLRLSVEHFSFPD----- 235 PRRIGLSATL DY+ +WL +GT+ V + +K+RL+VEHF D Sbjct: 183 FEKEPRRIGLSATLGDYSLAEKWLGSGTKRRVATPKTETSQQKIRLAVEHFYISDPIDSK 242 Query: 236 ------ARDEVQAEHLERARQAYYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAA 289 ++DEV+ ++L + YY +I+ +K LIF N+RT+AE+ I ++A Sbjct: 243 SKLTISSKDEVKEQNLTTDK--YYEYIHSKCKAQKCLIFANNRTEAEQVI--TNLRQIAK 298 Query: 290 KRGERDVFHVHHGSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAP 349 + D++HVHHGSISA LRE E A+R PAV AAT+TLELGID+G LERV+QLGAP Sbjct: 299 AKSLPDIYHVHHGSISASLREAAEQAMRAQDHPAVTAATVTLELGIDIGHLERVIQLGAP 358 Query: 350 YSCASFVQRLGRSGRRGDAASEMIFVTPEEED-EEAQLPARMPWTLLRAIAVIELY 404 +S +SF+QRLGRSGRRG + EM F EE ++ LPA++PW L++ IA+I+LY Sbjct: 359 FSVSSFLQRLGRSGRRG-SPPEMWFACYEEASMDKGALPAQIPWQLIQTIAIIQLY 413 >B2J135.1 B2J135_NOSP7 DEAD/DEAH box helicase domain protein Length = 724 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/404 (54%), Positives = 295/404 (73%), Gaps = 12/404 (2%) Query: 3 SNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPAL 62 S+ F RL+PFI+E+IY ++W LR Q+ AC+V+FDT HLL+ + TA+GKTEAAF P L Sbjct: 2 SDAFSRLSPFIQEYIYHHQWTELRPVQIAACKVIFDTDAHLLVTAATAAGKTEAAFLPIL 61 Query: 63 TQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQNP 122 T L+ +P+ ++G LYI+P+KALINDQF RLN LL+E +IPVWHWHGDV Q+ K KL+ NP Sbjct: 62 TLLHTNPATTIGALYISPIKALINDQFERLNYLLKEADIPVWHWHGDVSQSRKNKLLNNP 121 Query: 123 SGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRMA 182 G+LQITPESLE LL+N+ N + LF DLRF+I+DE+HAFMG++RG Q++ QL R++++ Sbjct: 122 QGILQITPESLESLLINKNNDLLRLFGDLRFVIIDEIHAFMGSERGCQIICQLQRLAKLT 181 Query: 183 GCHPRRIGLSATLSDYASVTEWLAAGTRESVEVSAPQG-GRKLRLSVEHFSFPDARDEVQ 241 PRRIGLSATL DY+ WL++GT +SV G R+++L+VEHF D DE + Sbjct: 182 QKQPRRIGLSATLGDYSLAENWLSSGTDKSVITPQTDGIKRQIKLAVEHFYISDEVDESE 241 Query: 242 AEHLERARQAYYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRGERDVFHVHH 301 A AY +I++ + +K LIF N+RT E I ++A ++G D++HVHH Sbjct: 242 AT-------AYEKYIFNLSKSRKCLIFANNRTRTESVI--ASLRQIATEQGLPDIYHVHH 292 Query: 302 GSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSCASFVQRLGR 361 GSISA LR+ E A+R+ PAV AATLTLELGID+G LERV+QL +P S ASF+QRLGR Sbjct: 293 GSISASLRQAAENAMREPNNPAVTAATLTLELGIDIGHLERVIQLESPLSVASFLQRLGR 352 Query: 362 SGRRGDAASEMIFVTPEEED-EEAQLPARMPWTLLRAIAVIELY 404 SGRRG+AA +M F+ EE+ EA LP ++PW LL++IA+I+LY Sbjct: 353 SGRRGEAA-DMRFICAEEKPLSEASLPEQIPWQLLQSIAIIQLY 395 >Q3M6X2.1 Q3M6X2_ANAVT DEAD/DEAH box helicase-like Length = 722 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/404 (53%), Positives = 290/404 (71%), Gaps = 12/404 (2%) Query: 3 SNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPAL 62 +N F RLAPFI+E+IY ++W LR Q AC V+FDT HLLIA+ TA+GKTEAAF P L Sbjct: 2 TNAFNRLAPFIQEYIYHHQWTELRPVQTAACEVVFDTDAHLLIAAATAAGKTEAAFLPVL 61 Query: 63 TQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQNP 122 T LY +P++++G LYI P+KALINDQF RLNDLLR +IPV+HWHGDV Q+ K KL+QNP Sbjct: 62 TLLYNNPASTIGALYIGPIKALINDQFARLNDLLRLADIPVYHWHGDVAQSRKNKLLQNP 121 Query: 123 SGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRMA 182 G+LQITPESLE LL+N+ I LF DLRF+++DE+HAFMG++RG Q++ QL R++ + Sbjct: 122 QGILQITPESLESLLVNKHKEILRLFGDLRFVVIDEIHAFMGSERGCQIICQLQRLANLT 181 Query: 183 GCHPRRIGLSATLSDYASVTEWLAAGT-RESVEVSAPQGGRKLRLSVEHFSFPDARDEVQ 241 PRRIGLSATL DY+ EWL GT ++ + G R+++L++EHF + DE + Sbjct: 182 KTQPRRIGLSATLGDYSMAEEWLRLGTDKQVITPKVEAGKRQIKLALEHFYIANDVDESE 241 Query: 242 AEHLERARQAYYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRGERDVFHVHH 301 A AY +I++ + +K LIF N+RT E I ++A ++ + D++HVHH Sbjct: 242 A-------TAYEKYIFNLSQSRKCLIFANNRTQTESII--ASLRQIANQQAQPDIYHVHH 292 Query: 302 GSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSCASFVQRLGR 361 GSISA LR+ E A+R+ PAV AATLTLELGID+G LERV+QL +P S ASF+QRLGR Sbjct: 293 GSISASLRQVAENAMREPHNPAVTAATLTLELGIDIGHLERVIQLESPLSVASFLQRLGR 352 Query: 362 SGRRGDAASEMIFVTPEEE-DEEAQLPARMPWTLLRAIAVIELY 404 +GRRG+AA +M F+ E+E E LP ++PW LL+ IA+I+LY Sbjct: 353 AGRRGEAA-DMRFICAEDEISAEEPLPEQIPWQLLQCIAIIQLY 395 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,409,870,684 Number of extensions: 93489006 Number of successful extensions: 285484 Number of sequences better than 1.0e-05: 1631 Number of HSP's gapped: 283439 Number of HSP's successfully gapped: 1862 Length of query: 453 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 314 Effective length of database: 1,751,175,118 Effective search space: 549868987052 Effective search space used: 549868987052 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)