BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0035.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3C3.1 B3K3C3_9BACI DEAD/DEAH box helicase domain protein 360 7e-98 Q24ZT1.1 Q24ZT1_DESHY Putative uncharacterized protein 201 7e-50 Q8YRW1.1 Q8YRW1_ANASP ATP-dependent helicase 199 2e-49 B8I966.1 B8I966_CLOCE DEAD/DEAH box helicase domain protein 199 3e-49 B2J135.1 B2J135_NOSP7 DEAD/DEAH box helicase domain protein 196 2e-48 >B3K3C3.1 B3K3C3_9BACI DEAD/DEAH box helicase domain protein Length = 739 Score = 360 bits (925), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 175/282 (62%), Positives = 207/282 (73%) Query: 1 VLSLPSFSSIEPGDYDAFMEYMIGMGHIECMDEGSLLVGLAGEKIVNNFRFYAVFKDDEE 60 VL+LP+F IEP +Y F++Y++ HI+ +EGSL++GL GEKIVNN+RFYAVFKDDEE Sbjct: 444 VLTLPAFRGIEPEEYKEFLQYLLQTDHIQRTEEGSLIIGLGGEKIVNNYRFYAVFKDDEE 503 Query: 61 HVVYNGTEEIGSITTVPPPGYCFTLAGKLWKVEEVDNRHKAVYVKGSRGKVDTLWLGAGG 120 HVVYNG+EEIGSITTVPPPGYCF+LAGKLWKVEEVD +HKA+YVK ++GKVDTLWLGAGG Sbjct: 504 HVVYNGSEEIGSITTVPPPGYCFSLAGKLWKVEEVDTKHKALYVKSAKGKVDTLWLGAGG 563 Query: 121 DVHTRIMNKIREVLGXXXXXXXXXXXXXXXXXXXXXXXKESGLLTHSVLPAGGDSMFILP 180 DVHTR++ K+REVL +ESGLL V+PAGGDS+FILP Sbjct: 564 DVHTRVVQKMREVLAVSAIYPYLAPGAVNRLERARRLARESGLLKQVVIPAGGDSLFILP 623 Query: 181 WAGSRQFRTLEXXXXXXXXXXXXXXSVTPMEPYYMVVSGKTDAETLEQEIIAEAAAVSDP 240 WAGS+QFRTLE S+ PMEPYYMVV+GK D ETL +EI E A D Sbjct: 624 WAGSKQFRTLERLLKHNLSERLALRSIVPMEPYYMVVAGKVDNETLMEEIKQELANCEDA 683 Query: 241 IALLGPDEAPYLGKYDEFIPHDLLRKAFSLDGLDVPGLVEVL 282 ALL PDEAPYLGKYDEF+P L+R AF+ DGLD+ GL E L Sbjct: 684 GALLDPDEAPYLGKYDEFVPPKLVRTAFAADGLDLEGLAEAL 725 >Q24ZT1.1 Q24ZT1_DESHY Putative uncharacterized protein Length = 720 Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 159/282 (56%), Gaps = 7/282 (2%) Query: 1 VLSLPSFSSIEPGDYDAFMEYMIGMGHIECMDEGSLLVGLAGEKIVNNFRFYAVFKDDEE 60 VL+L F +I D+ + Y+I + HIE +E LLVGL GE++V NFRFY+VF D+EE Sbjct: 434 VLTLSPFKNISSEDFRRLLLYLIEIDHIEQTEERGLLVGLTGEQVVRNFRFYSVFPDNEE 493 Query: 61 HVVYNGTEEIGSITTVPPPGYCFTLAGKLWKVEEVDNRHKAVYVKGSRGKVDTLWLGAGG 120 V + ++EIGSI + PP G F LAG+ W+V E++ + + VY + +GKV T W G GG Sbjct: 494 FTVRDESKEIGSILSPPPKGERFALAGRTWEVMEIELKRRTVYARPVKGKVRTTWNGGGG 553 Query: 121 DVHTRIMNKIREVLGXXXXXXXXXXXXXXXXXXXXXXXKESGLLTHSVLPAGGDSMFILP 180 +H+RI+ ++++VL + +G+L ++LP GG+S + P Sbjct: 554 SIHSRILQRMKQVLEEDIIYSYLQPGAVKRLCEARNLARAAGILKTNILPLGGNSYCLFP 613 Query: 181 WAGSRQFRTLEXXXXXXXXXXXXXXSVTPMEPYYMVVSGKT----DAETLEQEIIAEAAA 236 W G+ +RTLE +V + PY++ S K+ + ++L +E+IA A Sbjct: 614 WLGTVAYRTLERCLRYRGADLYEIRNVGGLSPYFLTFSTKSGTTIEVDSLLKEVIAGTA- 672 Query: 237 VSDPIALLGPDEAPYLGKYDEFIPHDLLRKAFSLDGLDVPGL 278 D L+ DEAP L KYDEFIP LLRK F D LD+ L Sbjct: 673 --DTEQLMQEDEAPQLEKYDEFIPPSLLRKGFRYDYLDLNEL 712 >Q8YRW1.1 Q8YRW1_ANASP ATP-dependent helicase Length = 722 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/286 (37%), Positives = 153/286 (53%), Gaps = 1/286 (0%) Query: 1 VLSLPSFSSIEPGDYDAFMEYMIGMGHIECMDEGSLLVGLAGEKIVNNFRFYAVFKDDEE 60 VLSLP F++I D+ + Y+I +GHI+ ++ L++GLAGE+IV+ F+FYAVF D++E Sbjct: 437 VLSLPPFAAISQEDFKLLLRYLIDIGHIQHTEQNKLILGLAGERIVSKFQFYAVFADNKE 496 Query: 61 HVVYNGTEEIGSITTVPPPGYCFTLAGKLWKVEEVDNRHKAVYVKGSRGKVDTLWLGAGG 120 + V GT+EIGSI T P G F LAG W+V E+D + + V VK GK + W G G Sbjct: 497 YTVKQGTKEIGSIATPPVVGKQFALAGVTWEVTEIDFKKRVVIVKQVEGKATSYWRGGSG 556 Query: 121 DVHTRIMNKIREVLGXXXXXXXXXXXXXXXXXXXXXXXKESGLLTHSVLPAGGDSMFILP 180 +HT+++ ++R VL KE GL +L I P Sbjct: 557 TIHTKVLQRMRRVLLEDAEYSYLQKKALQRLRKVRELVKEVGLDKQYILQLEKGRCCIFP 616 Query: 181 WAGSRQFRTLEXXXXXXXXXXXXXXSVTPMEPYYMVVS-GKTDAETLEQEIIAEAAAVSD 239 W G+ +RTLE S+ + PYY+ + GK + ++QEI++ Sbjct: 617 WMGTVAYRTLERLLNNFCRESLEISSIGGVNPYYLTIKLGKGKFKYIQQEIVSLCEQRIR 676 Query: 240 PIALLGPDEAPYLGKYDEFIPHDLLRKAFSLDGLDVPGLVEVLKQW 285 L+ EAP + KYDEFIPH LLRKAF+ D LD+ + V+ W Sbjct: 677 SEDLISSAEAPEMQKYDEFIPHPLLRKAFADDYLDMDEIRRVIGNW 722 >B8I966.1 B8I966_CLOCE DEAD/DEAH box helicase domain protein Length = 741 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 155/286 (54%), Gaps = 1/286 (0%) Query: 1 VLSLPSFSSIEPGDYDAFMEYMIGMGHIECMDEGSLLVGLAGEKIVNNFRFYAVFKDDEE 60 VL+L F + D+ + ++I + HI+ + L+VGLAGE++V +FRFYAVF ++ E Sbjct: 455 VLTLSPFKEVSQEDFKELLRHLIKIDHIQLTERKGLIVGLAGEQLVRSFRFYAVFAENVE 514 Query: 61 HVVYNGTEEIGSITTVPPPGYCFTLAGKLWKVEEVDNRHKAVYVKGSRGKVDTLWLGAGG 120 + V + T EIGSI PPPG F LAG W V E+D ++K VY K G+V T W G GG Sbjct: 515 YTVKDDTSEIGSIINPPPPGERFALAGNTWVVVEIDPKNKIVYSKKVNGRVRTYWSGGGG 574 Query: 121 DVHTRIMNKIREVLGXXXXXXXXXXXXXXXXXXXXXXXKESGLLTHSVLPAGGDSMFILP 180 +H +++ ++R+VL + + L S+ AG + +I P Sbjct: 575 GIHIKLLQRMRKVLFEEKVYPYLKEKAKERLQIARDFARRTELDKKSIFYAGNNEYYIFP 634 Query: 181 WAGSRQFRTLEXXXXXXXXXXXXXXSVTPMEPYYMVV-SGKTDAETLEQEIIAEAAAVSD 239 W G+ +FRTL+ ++ + PYY+ + S +++E L Q I A Sbjct: 635 WMGTNEFRTLDRWLRVQCSDVAKIRNIGGLPPYYLTIQSDVSNSEELLQVITNMAEREIS 694 Query: 240 PIALLGPDEAPYLGKYDEFIPHDLLRKAFSLDGLDVPGLVEVLKQW 285 P L+G ++AP L KYDEFIPH+LLRKAF D LD+ + ++ W Sbjct: 695 PYDLVGEEDAPQLQKYDEFIPHNLLRKAFVTDYLDIRAMKGLIGDW 740 >B2J135.1 B2J135_NOSP7 DEAD/DEAH box helicase domain protein Length = 724 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 152/294 (51%), Gaps = 17/294 (5%) Query: 1 VLSLPSFSSIEPGDYDAFMEYMIGMGHIECMDEGSLLVGLAGEKIVNNFRFYAVFKDDEE 60 + SLP F++I D+ + Y+I +GHI+ ++G L++GL GEKIV F+FYAVF + +E Sbjct: 437 IFSLPPFAAISKEDFQLLLRYLIDIGHIQHTEKGKLILGLIGEKIVRKFQFYAVFAEQQE 496 Query: 61 HVVYNGTEEIGSITTVPPPGYCFTLAGKLWKVEEVDNRHKAVYVKGSRGKVDTLWLGAGG 120 ++V G +IGSI T P G F LAG+ W+V EVD + KA++VK + GK W G+GG Sbjct: 497 YIVKQGATQIGSIVTPPAVGNQFALAGRTWQVVEVDFKKKAIFVKQAEGKASIYWRGSGG 556 Query: 121 DVHTRIMNKIREVLGXXXXXXXXXXXXXXXXXXXXXXXKESGLLTHSVLPAGGDSMFILP 180 +HT+++ ++++VL ++ GL ++L I P Sbjct: 557 TIHTKVLQRMQQVLFENVEYSYLQKNALQRLREVRHLAQQVGLDKQNILELEKGKCCIFP 616 Query: 181 WAGSRQFRTLEXXXXXXXXXXXXXXSVTPMEPYYMVVSGKTD---------AETLEQEII 231 W G+ +RTLE S+ + PYY+ V D A EQ I Sbjct: 617 WMGTVAYRTLERLLNSYCRESLEITSIGGVNPYYLTVKLAKDKFKHLYPEIASLCEQRIT 676 Query: 232 AEAAAVSDPIALLGPDEAPYLGKYDEFIPHDLLRKAFSLDGLDVPGLVEVLKQW 285 +E LL EAP + KYD FIPH LLRKAF+ D LD+ L + + W Sbjct: 677 SE--------DLLSTSEAPEIQKYDRFIPHPLLRKAFASDSLDMRELKQQVSLW 722 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,686,023,718 Number of extensions: 65542840 Number of successful extensions: 115318 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 115248 Number of HSP's successfully gapped: 64 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)