BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0034.p (456 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCZ4.1 B1DCZ4_9BACL Extracellular solute-binding protein family 1 633 e-179 A8VRA1.1 A8VRA1_9BACI ABC-type sugar transport system periplasmi... 238 1e-60 Q9K6P8.1 Q9K6P8_BACHD Sugar ABC transporter (Sugar-binding protein) 225 6e-57 Q8ELU3.1 Q8ELU3_OCEIH Sugar ABC transporter sugar-binding protein 221 2e-55 Q2BBT3.1 Q2BBT3_9BACI Sugar ABC transporter sugar-binding protein 218 1e-54 >B1DCZ4.1 B1DCZ4_9BACL Extracellular solute-binding protein family 1 Length = 457 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 309/457 (67%), Positives = 360/457 (78%), Gaps = 1/457 (0%) Query: 1 MVNRKMKTTFXXXXXXXXXXXXXXCGXXXXXXXXXXXXXXXPDKTNSGTATNTTKSDKKV 60 M MK+ CG + + AT S++KV Sbjct: 1 MAKMNMKSVLGLVLAGSLAISLTACGSNSNNGDKNANSGASNNAGATNAATEKPASNEKV 60 Query: 61 TITFQNIYPDPTTPSYKMVHELSEQYEKEHPNIKIELDTLNTDQQKVKLKTQAASKEVPD 120 TITFQNIYPDPT P M+ ++ +QYE +HPN+KIELD+LNTDQQK KLKTQAAS EVPD Sbjct: 61 TITFQNIYPDPTDPKNGMMKKIVKQYETDHPNVKIELDSLNTDQQKQKLKTQAASHEVPD 120 Query: 121 ITIVNPAAQMKPFVDAGLFAPLNDMLDQNGLKDTYQTGLLDYYSFDGNVYALPDGNNIEV 180 ITIVNPAAQM+P+VDA LFAPLNDM++QNGLKDT+Q G+LD+Y+FD N+YALPDGNNI V Sbjct: 121 ITIVNPAAQMQPYVDAKLFAPLNDMVEQNGLKDTFQEGVLDFYTFDNNLYALPDGNNIGV 180 Query: 181 VFYNKDLFAQAGIANTPTTFEEMLKDVKILKDKGITPLAIGEKDSWTGSFLFMNILLRTN 240 V+YNKDLF QAGIAN PTTFEEM+ DVK LK KGI P+AIGEKD+WTGSFLFMNILLRTN Sbjct: 181 VYYNKDLFQQAGIANPPTTFEEMIADVKTLKAKGIQPMAIGEKDTWTGSFLFMNILLRTN 240 Query: 241 GGPGFLQDVMDGKKTFEDPAFVEAVDAFQQLVQAGAFPDGATSIDANAGGNIFKSGKAAM 300 GGPGFL DV+ GKKTFEDPAFVEAVDA Q L+QAGAF +G TS D NAG NIFK+GKAAM Sbjct: 241 GGPGFLSDVVAGKKTFEDPAFVEAVDAMQNLIQAGAFQEGVTSFDYNAGENIFKTGKAAM 300 Query: 301 WVIGSWETGAVDAS-SVAGKVGAFQFPTVNGKGDPNEFMLAPGSAFAVSANSEHLQETKD 359 + +GSW TG ++ S ++ KVG F+FPTVNGKGDPN+FMLAPGSAFA+SA+S+HLQETKD Sbjct: 301 YYMGSWATGGIETSEALKDKVGVFKFPTVNGKGDPNQFMLAPGSAFAISADSKHLQETKD 360 Query: 360 FLNFFASNLPKKQFELKNAVGLGQKVDGDLKAAGYSDLAITIAGLFNQVKGGDLSFDNTM 419 FLN+F N PK+ F +K AVGL QKVDGD KAAGYSD+AI++ LF VKGGDLSFDNTM Sbjct: 361 FLNYFMLNFPKEAFAVKGAVGLAQKVDGDFKAAGYSDMAISVLDLFKDVKGGDLSFDNTM 420 Query: 420 NPATSQVHLSSIQNLFVQKMDSAAVAKEHQTAFEANK 456 NP TSQ HL+S+QN+FVQK DSA VAKEHQTA+E+NK Sbjct: 421 NPGTSQGHLTSLQNIFVQKKDSAEVAKEHQTAYESNK 457 >A8VRA1.1 A8VRA1_9BACI ABC-type sugar transport system periplasmic component-like protein Length = 454 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/417 (32%), Positives = 225/417 (53%), Gaps = 12/417 (2%) Query: 43 DKTNSGTATNTTKSDKKVTITFQNIYPDPTTPS-YKMVHELSEQYEKEHPNIKIELDTLN 101 D N+ TA N + VT+ F +++P ++P Y++V ++ E++E HP++ +EL+ L Sbjct: 39 DAGNTDTAENGDADKEDVTLDFMHLWPQGSSPDHYRIVSQIIEEFEDMHPHVTVELEVLE 98 Query: 102 TDQQKVKLKTQAASKEVPDITIVNPAAQMKPFVDAGLFAPLNDMLDQNGLKDTYQTGLLD 161 +Q K K++ ++S ++PD+ + PA M+P+V+ +FAPL+D+LD++GL+D + G L+ Sbjct: 99 NEQYKNKMQVISSSNQLPDVGMTWPAGYMEPYVNGNMFAPLDDILDEDGLRDDFVAGTLE 158 Query: 162 YYSFDGNVYALPDGNNIEVVFYNKDLFAQAGIANTPTTFEEMLKDVKILKDKGITPLAIG 221 Y +G+ YALP NI VFYNK +F + G+ + P TF++ + + + + P+A+G Sbjct: 159 AYEMNGDSYALPLELNIAPVFYNKAIFDEYGV-DVPETFDDFMDAIDTFVENDMAPIALG 217 Query: 222 EKDSWTGSFLFMNILLRTNGGPGFLQDVMDGKKTFEDPAFVEAVDAFQQLVQAGAFPDGA 281 +D WTGS +M + R GGP L +D +FED +EA + +VQ+ AF G Sbjct: 218 NRDRWTGSLWYMYLADRI-GGPDALNAAIDRSGSFEDERLIEAAERTVDMVQSDAFIRGF 276 Query: 282 TSIDANAGGNIFKSGKAAMWVIGSWE-----TGAVDASSVAGKVGAFQFPTVN-GKGDPN 335 + + F + AAM++IGSW+ T +G F+FP V+ G GD N Sbjct: 277 NGLSDQEAKSEFMNSNAAMYLIGSWDLPNYTTNEEVPQEFRDNIGFFKFPEVDGGDGDIN 336 Query: 336 EFMLAPGSAFAVSANSEHLQETKDFLNFFASNLPKKQFELKNAVGLGQKVDGDLKAAGYS 395 ++ PG V+ NS+ +E K F+ +FA K E + G +VD D A Sbjct: 337 SWVGGPGVGLFVAENSDIQEEAKAFVKYFAEEWGKYSVEDAGVIP-GTQVDTD--AVDLP 393 Query: 396 DLAITIAGLFNQVKGGDLSFDNTMNPATSQVHLSSIQNLFVQKMDSAAVAKEHQTAF 452 DL + + N L D M+ ++ HL+ IQ LF + + A+EH+ A Sbjct: 394 DLFVEVLDELNNASNITLFADVQMSAGVAETHLNQIQALFGEAVTPEDFAREHEEAL 450 >Q9K6P8.1 Q9K6P8_BACHD Sugar ABC transporter (Sugar-binding protein) Length = 438 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 132/408 (32%), Positives = 223/408 (54%), Gaps = 13/408 (3%) Query: 54 TKSDKKVTITFQNIYPDPTTPSY-KMVHELSEQYEKEHPNIKIELDTLNTDQQKVKLKTQ 112 T +++ VTI F +++P ++P + ++V+++ ++E ++P+I +EL+ L +Q K KL+ Sbjct: 35 TSTEEDVTINFMHLWPQGSSPDHNRIVNQIISEFEADNPHITVELEVLENEQYKNKLQVI 94 Query: 113 AASKEVPDITIVNPAAQMKPFVDAGLFAPLNDMLDQNGLKDTYQTGLLDYYSFDGNVYAL 172 ++S ++PD+ + PA ++P+V+ LF PL+D+L ++GL++ + G ++ Y DG YAL Sbjct: 95 SSSNQLPDVGMTWPAGFLEPYVNGKLFTPLDDIL-EDGLREQFVAGTVEAYEIDGQAYAL 153 Query: 173 PDGNNIEVVFYNKDLFAQAGIANTPTTFEEMLKDVKILKDKGITPLAIGEKDSWTGSFLF 232 P NI VFYNK +F + G+ P T+EE + V L + G+TP+A+G +D WTGS + Sbjct: 154 PLELNIAPVFYNKAIFDEYGL-EAPETYEEFIHVVDTLVENGVTPIALGNRDRWTGSLWY 212 Query: 233 MNILLRTNGGPGFLQDVMDGKKTFEDPAFVEAVDAFQQLVQAGAFPDGATSIDANAGGNI 292 M + R GG L +D +FED ++A Q+L+ AF G + Sbjct: 213 MYMAERI-GGADALNSAIDRSGSFEDERLIDAAAHIQELIDRDAFIRGFNGLSDQEAKAE 271 Query: 293 FKSGKAAMWVIGSWE-----TGAVDASSVAGKVGAFQFPTVN-GKGDPNEFMLAPGSAFA 346 F +G AAM++IGSW+ T + F+FPT++ G+GD N ++ PG Sbjct: 272 FMNGGAAMYLIGSWDLPNYTTNEEVPQEFRDGISFFKFPTIDGGEGDINSWVGGPGVGLF 331 Query: 347 VSANSEHLQETKDFLNFFASNLPKKQFELKNAVGLGQKVDGDLKAAGYSDLAITIAGLFN 406 V+ NS+ +E K F+ +F K E + G +V+ D DL I + N Sbjct: 332 VAENSDVKEEAKQFVKYFIEEWGKYSVEDAGVIP-GTQVNTD--EVDLPDLFIDVLDELN 388 Query: 407 QVKGGDLSFDNTMNPATSQVHLSSIQNLFVQKMDSAAVAKEHQTAFEA 454 L D M+ + ++ HL+ IQ+LF ++ A A+EH+ A A Sbjct: 389 HASDITLFADVQMSASVAETHLNMIQSLFGHEVTPEAFAEEHEKALSA 436 >Q8ELU3.1 Q8ELU3_OCEIH Sugar ABC transporter sugar-binding protein Length = 435 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/411 (31%), Positives = 213/411 (51%), Gaps = 14/411 (3%) Query: 47 SGTATNTTKSDKKVTITFQNIYPDPTTPS-YKMVHELSEQYEKEHPNIKIELDTLNTDQQ 105 SG + S T+ F +++P+ ++ YK+V+++ E +E E+ I IEL+ L+ +Q Sbjct: 24 SGEEDENSASGDSKTVKFMHLWPEGSSAQHYKVVNQIIEDFETENEGIDIELEVLSNEQY 83 Query: 106 KVKLKTQAASKEVPDITIVNPAAQMKPFVDAGLFAPLNDMLDQNGLKDTYQTGLLDYYSF 165 K K+K Q+ S E+PD+ + A M+PFVD +FA L+D+L+++ L + + G D +S Sbjct: 84 KEKIKVQSTSNELPDVGMTWAAGYMEPFVDGNMFASLDDILEEDNLSEEFVAGTTDAFSI 143 Query: 166 DGNVYALPDGNNIEVVFYNKDLFAQAGIANTPTTFEEMLKDVKILKDKGITPLAIGEKDS 225 D Y LP NI ++YNK +F + G+ PTT +E + V L + + P+A+G +D+ Sbjct: 144 DDTAYGLPLELNISSIYYNKAIFDEYGLEE-PTTLDEFNQVVDTLNENDVIPVALGNRDA 202 Query: 226 WTGSFLFMNILLRTNGGPGFLQDVMDGKKTFEDPAFVEAVDAFQQLVQAGAFPDGATSID 285 WTGS +M + R G L +D +FEDPA ++A + Q LV +F G + Sbjct: 203 WTGSMWYMYLANRLGGDEDVLTSAIDRSGSFEDPALLKAAEHLQGLVNDNSFVSGFNGLA 262 Query: 286 ANAGGNIFKSGKAAMWVIGSWE-----TGAVDASSVAGKVGAFQFPTVNGKGDPNEFMLA 340 ++F +AAM++I +W+ T VG F FP V+G GD N ++ Sbjct: 263 DQEAKSMFMESQAAMYLIATWDLPNYTTNEDVPQEFRDSVGYFPFPQVDGSGDFNSYVGG 322 Query: 341 PGSAFAVSANSEHLQETKDFLNFFASNLPKKQFELKNAVGL--GQKVDGDLKAAGYSDLA 398 PG VS NSE +E K F+++F ++ VG+ K+DG +A +L Sbjct: 323 PGVGLFVSENSEVKEEAKTFVSYFVKEWGERAV---TEVGIIPATKIDG--EALDLPELY 377 Query: 399 ITIAGLFNQVKGGDLSFDNTMNPATSQVHLSSIQNLFVQKMDSAAVAKEHQ 449 + + N L D M+ + +QVHL IQ LF ++ K H+ Sbjct: 378 VEVLDDLNNASNITLYADVQMSASAAQVHLDMIQALFGGEITPEEFVKTHE 428 >Q2BBT3.1 Q2BBT3_9BACI Sugar ABC transporter sugar-binding protein Length = 433 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 210/398 (52%), Gaps = 12/398 (3%) Query: 61 TITFQNIYPDPTTPSY-KMVHELSEQYEKEHPNIKIELDTLNTDQQKVKLKTQAASKEVP 119 TI F +++P+ ++ + ++V + E +E EHP++K++L+ L+ +Q K KLK + S ++P Sbjct: 39 TIEFMHLWPEGSSKLHNEIVSGIIEDFESEHPDVKVDLEVLSNEQYKDKLKVLSTSNQLP 98 Query: 120 DITIVNPAAQMKPFVDAGLFAPLNDMLDQNGLKDTYQTGLLDYYSFDGNVYALPDGNNIE 179 D+ + A + P+V F PL+D+L+ + LKD + +G + Y DG+ Y LP NI Sbjct: 99 DVGLTWAAGFLDPYVSGKKFTPLDDLLEGD-LKDKFVSGTAEAYEVDGSTYGLPLELNIA 157 Query: 180 VVFYNKDLFAQAGIANTPTTFEEMLKDVKILKDKGITPLAIGEKDSWTGSFLFMNILLRT 239 VFYNK +F + G+ P T+EE V+ L G+ P+A+G KD WTGS +M + R Sbjct: 158 TVFYNKAIFEKYGL-EAPKTYEEFQNVVETLDKNGVAPIALGNKDRWTGSLWYMYLADRI 216 Query: 240 NGGPGFLQDVMDGKKTFEDPAFVEAVDAFQQLVQAGAFPDGATSIDANAGGNIFKSGKAA 299 GG L +D +FEDPA V A + Q+LV AF G + ++F + +AA Sbjct: 217 GGGD-VLTKAIDRSGSFEDPALVSAAEKVQELVDMNAFVKGFNGLADEEAKSMFMNEQAA 275 Query: 300 MWVIGSWE-----TGAVDASSVAGKVGAFQFPTVNGKGDPNEFMLAPGSAFAVSANSEHL 354 M++I +W+ T VG F FPTV+GKGD + F+ PG V+ +S+ Sbjct: 276 MYLIATWDLPNYTTNEDVPQEFRDSVGYFNFPTVDGKGDMDSFVGGPGVGLFVAEDSDVK 335 Query: 355 QETKDFLNFFASNLPKKQFELKNAVGLGQKVDGDLKAAGYSDLAITIAGLFNQVKGGDLS 414 +E K+F ++F +K G+ D + D+ + + N L Sbjct: 336 EEAKEFASYFIQQWGEKSV---TDAGVIPATKVDAASLDLPDMYVDVLEDLNSASNITLF 392 Query: 415 FDNTMNPATSQVHLSSIQNLFVQKMDSAAVAKEHQTAF 452 D M+ T+QVHL IQ+LF +++ AK H+ A Sbjct: 393 ADVQMSADTAQVHLDMIQSLFGKEVSPEDFAKAHEEAL 430 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,619,238,196 Number of extensions: 116341186 Number of successful extensions: 267176 Number of sequences better than 1.0e-05: 2230 Number of HSP's gapped: 265880 Number of HSP's successfully gapped: 2231 Length of query: 456 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 317 Effective length of database: 1,751,175,118 Effective search space: 555122512406 Effective search space used: 555122512406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)