BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0033.p (271 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCZ5.1 B1DCZ5_9BACL Binding-protein-dependent transport system... 375 e-102 B8I508.1 B8I508_CLOCE Binding-protein-dependent transport system... 213 2e-53 Q8ELU4.1 Q8ELU4_OCEIH Sugar ABC transporter permease 211 8e-53 B3KA22.1 B3KA22_9BACI Binding-protein-dependent transport system... 209 2e-52 A5ZA59.1 A5ZA59_9FIRM Putative uncharacterized protein 207 1e-51 >B1DCZ5.1 B1DCZ5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/271 (67%), Positives = 229/271 (84%) Query: 1 VFIPILVSLYTGLLKWDGLTSAQFVGFGNFKDMFFNDPVFWPSVRRTLLYAVASMLEIPL 60 VF+PI+VSLYT L+W+G+ +++F+G NF + F+D VFWP+VR TL++AV SMLEIP+ Sbjct: 26 VFVPIIVSLYTSTLEWNGIGASKFIGLDNFNKLLFHDAVFWPAVRHTLMFAVFSMLEIPI 85 Query: 61 CLGMAILLNRYVRRGNTLVSIYFTPVILSVVIIGQLWKTVYNPASMGGMLNGVLISLGLD 120 L +AILL+R+V++ N LVS YF PVILSVVIIGQLWKT+YNPASMGGMLN VL +GL Sbjct: 86 ALFVAILLSRFVKKPNFLVSSYFMPVILSVVIIGQLWKTIYNPASMGGMLNQVLDWVGLH 145 Query: 121 SWTHNWLTEPKIAMFALYFVSLWQFFGYHLLIQYTGVQNIPDELYEAAKIDGADGFKADR 180 SW+ WLT+P IAM++LYFV+LWQ+ GYH LIQ+TG+QNIP ++YEAAKIDGA+G KAD Sbjct: 146 SWSQQWLTDPDIAMYSLYFVALWQYLGYHTLIQFTGIQNIPSDIYEAAKIDGAEGLKADW 205 Query: 181 YITLPLIVPIFKISIVLAFIGSLQAFDLVMVMTAGGPAHATDVISTHMYNSSFMSLKYGY 240 YITLP+ VPIFKISIVLAFIGSLQ+FD++MVMT GGP +ATDVI+THMY S +S+KYGY Sbjct: 206 YITLPMNVPIFKISIVLAFIGSLQSFDMIMVMTGGGPGNATDVIATHMYRMSILSMKYGY 265 Query: 241 GSAIASFLVIVCLVFTGFINTIFNRIERKFN 271 GSAIA+ LV+VCLV T IN FNR+ERK+ Sbjct: 266 GSAIAAILVVVCLVATVVINYGFNRLERKYT 296 >B8I508.1 B8I508_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/266 (39%), Positives = 172/266 (64%), Gaps = 4/266 (1%) Query: 1 VFIPILVSLYTGLLKWDGLTSAQFVGFGNFKDMFFNDPVFWPSVRRTLLYAVASM-LEIP 59 + +PI++S Y L +W G F+G N+K + +DP+F + +L+ A AS+ +++P Sbjct: 27 IIVPIIMSTYYSLQEWSGFGKGTFIGLQNYKGLL-SDPIFIKAAVNSLILAFASVFIQLP 85 Query: 60 LCLGMAILLNRYVRRGNTLVSIYFTPVILSVVIIGQLWKTVYNPASMGGMLNGVLISLGL 119 + L +A+ L + V+ + V+IYF PVI+S V+IGQLW +YNP G+LN L ++GL Sbjct: 86 ISLLLALTLAKGVKFEKSFVTIYFIPVIISTVVIGQLWMKIYNPDY--GILNLFLKNIGL 143 Query: 120 DSWTHNWLTEPKIAMFALYFVSLWQFFGYHLLIQYTGVQNIPDELYEAAKIDGADGFKAD 179 S WL +PK A+ A + +WQ+ GYH+L+ Y G+++I +++EAA IDG+ + Sbjct: 144 GSLASEWLGDPKRALTATFIPIIWQYIGYHMLLMYAGIKSISTDVFEAAVIDGSSWWNTS 203 Query: 180 RYITLPLIVPIFKISIVLAFIGSLQAFDLVMVMTAGGPAHATDVISTHMYNSSFMSLKYG 239 IT+P++ P+ +S++ A G+L+ FDLV V+T GGPAHA++VI T+M ++ F +YG Sbjct: 204 MKITIPMLKPVLNVSVIFAVTGALKVFDLVYVLTGGGPAHASEVIGTYMVSTIFKGNQYG 263 Query: 240 YGSAIASFLVIVCLVFTGFINTIFNR 265 YGSA+A F+++ C V + + +F Sbjct: 264 YGSAMAIFVILECFVLSILVGLLFRE 289 >Q8ELU4.1 Q8ELU4_OCEIH Sugar ABC transporter permease Length = 292 Score = 211 bits (536), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 110/256 (42%), Positives = 167/256 (65%), Gaps = 4/256 (1%) Query: 1 VFIPILVSLYTGLLKWDGLTSAQFVGFGNFKDMFFNDPVFWPSVRRTLLYAVASMLEIPL 60 + IP+L+S Y GL+ WDG+ + QF+G N+ D FW S + L A+ S L + L Sbjct: 26 IVIPLLLSGYFGLMDWDGIGAMQFIGLDNYITAM-QDSKFWESTLHSFLLAIFSALSLLL 84 Query: 61 CLGMAILLNRYVRRGNTLVSIYFTPVILSVVIIGQLWKTVYNPASMGGMLNGVLISLGLD 120 L +A++L ++ N L IY P++LS V I QLW VYNP++ GMLN +L SLG++ Sbjct: 85 YLVVALILASKIKGANFLKKIYLIPMLLSSVAIAQLWIKVYNPSN--GMLNSILTSLGVE 142 Query: 121 SWTHNWLTEPKIAMFALYFVSLWQFFGYHLLIQYTGVQNIPDELYEAAKIDGADGFKADR 180 + WL +P I ++A++ +WQ+ G+++LI Y ++NIP+ + EAAKIDGA + Sbjct: 143 N-PPAWLADPNIVLYAIFIPIIWQYAGFYILIYYAALKNIPESIIEAAKIDGASPIQIAI 201 Query: 181 YITLPLIVPIFKISIVLAFIGSLQAFDLVMVMTAGGPAHATDVISTHMYNSSFMSLKYGY 240 I PLI+ +FK++IVLA +GSL+ FDL+ VMT GGP A++V++++MY +F S +GY Sbjct: 202 RIKFPLIMTVFKVTIVLAIVGSLKYFDLIYVMTGGGPNGASEVMASYMYKLAFSSYDFGY 261 Query: 241 GSAIASFLVIVCLVFT 256 GSAI L+I+ L+ T Sbjct: 262 GSAIGFLLLIITLIVT 277 >B3KA22.1 B3KA22_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/267 (40%), Positives = 173/267 (64%), Gaps = 4/267 (1%) Query: 1 VFIPILVSLYTGLLKWDGLTSAQFVGFGNFKDMFFNDPVFWPSVRRTLLYAVASMLEIPL 60 V+IPI+++ Y GL +W+G+ + F+G N++ + +D FW S +LL AV S + + Sbjct: 26 VYIPIILTAYYGLNEWNGIGAMTFIGLDNYQALL-SDGKFWDSAWHSLLLAVFSAASLMI 84 Query: 61 CLGMAILLNRYVRRGNTLVSIYFTPVILSVVIIGQLWKTVYNPASMGGMLNGVLISLGLD 120 L +A++L ++ N IY P++LS V I QLW +Y+P + G++N L S+G+ Sbjct: 85 YLAVAMVLASKIKGANLFRKIYLIPMLLSSVAIAQLWLRIYHPTN--GIVNSFLESIGIT 142 Query: 121 SWTHNWLTEPKIAMFALYFVSLWQFFGYHLLIQYTGVQNIPDELYEAAKIDGADGFKADR 180 + WL EP + +FAL+ LWQ+ G+++LI Y ++NIP L EAAKIDGA F+ Sbjct: 143 N-PPAWLAEPSLVLFALFIPILWQYAGFYILIYYAALKNIPASLVEAAKIDGATSFQIAF 201 Query: 181 YITLPLIVPIFKISIVLAFIGSLQAFDLVMVMTAGGPAHATDVISTHMYNSSFMSLKYGY 240 I LPLI+ + K++IVLA +GSL+ FDL+ VMT GGP A++V++++MY+++F + +GY Sbjct: 202 RIKLPLIMEVIKVTIVLAVVGSLKYFDLIFVMTDGGPNGASEVMASYMYHTAFRAYDFGY 261 Query: 241 GSAIASFLVIVCLVFTGFINTIFNRIE 267 GSAI FL+++CL+ T I + E Sbjct: 262 GSAIGFFLLVICLIVTWVIRKLTASKE 288 >A5ZA59.1 A5ZA59_9FIRM Putative uncharacterized protein Length = 294 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/268 (41%), Positives = 175/268 (65%), Gaps = 6/268 (2%) Query: 3 IPILVSLYTGLLKWDGLTSAQFVGFGNFKDMFFNDPVFWPSVRRTLLYAVASM-LEIPLC 61 IP++ S +++G+ S F+G N+ ++F +D F +V+ +L+ AS+ +++P+ Sbjct: 28 IPLITSGVYSFFEYNGIGSKTFIGIKNYIELFTSDRYFPQAVKNSLILVAASLFIQLPIS 87 Query: 62 LGMAILLNRYVRRGNTLVSIYFTPVILSVVIIGQLWKTVYNPASMGGMLNGVLISLGLDS 121 L +A++L++ V+ N +IYF PV++S ++IGQLW ++N S G++N V I + Sbjct: 88 LILALILSKGVKGDNFFRTIYFIPVVISSMVIGQLWLKMFN--SDYGVINTV-IRYFVPE 144 Query: 122 WTHNWLTEPKIAMFALYFVSLWQFFGYHLLIQYTGVQNIPDELYEAAKIDGADGFKADRY 181 + H+WLT K A + S+WQ+ GYH++I Y G+++I + YEAA+IDGA ++ R Sbjct: 145 YEHSWLT--KNAFMTVLIPSVWQYIGYHMIIFYAGIKSISTDYYEAAQIDGASTWQVYRK 202 Query: 182 ITLPLIVPIFKISIVLAFIGSLQAFDLVMVMTAGGPAHATDVISTHMYNSSFMSLKYGYG 241 ITLPL+VP+ K ++ A GSL+AFDLV VMT GGP H ++V +T MYN+ F YGYG Sbjct: 203 ITLPLLVPVIKTCVIFAITGSLRAFDLVYVMTGGGPNHISEVPATLMYNNLFRKGLYGYG 262 Query: 242 SAIASFLVIVCLVFTGFINTIFNRIERK 269 SA A F+VI CL+FT +N +F + E+ Sbjct: 263 SAQAFFIVIECLIFTFIVNRLFKKAEQN 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,661,988,193 Number of extensions: 69498160 Number of successful extensions: 242959 Number of sequences better than 1.0e-05: 5863 Number of HSP's gapped: 236147 Number of HSP's successfully gapped: 5865 Length of query: 271 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 138 Effective length of database: 1,807,701,208 Effective search space: 249462766704 Effective search space used: 249462766704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)