BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0032.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCZ6.1 B1DCZ6_9BACL Binding-protein-dependent transport system... 397 e-109 B1DHC1.1 B1DHC1_9BACL Binding-protein-dependent transport system... 238 4e-61 A8VR98.1 A8VR98_9BACI ABC-type sugar transport system permease c... 232 3e-59 A4IP88.1 A4IP88_GEOTN Sugar ABC transporter (Permease) 231 4e-59 B4BMC9.1 B4BMC9_9BACI Binding-protein-dependent transport system... 231 4e-59 >B1DCZ6.1 B1DCZ6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/275 (70%), Positives = 231/275 (84%), Gaps = 2/275 (0%) Query: 2 RKFKKG--IVYLLFAIPVVTQXXXXXXXXXXXXKTNEEIMDGSFFSFPKSFQWHNYSEAY 59 RKF G ++++L + +VTQ KTNEEI+ G FF+ P + QW NYS A Sbjct: 17 RKFSIGKILMWVLLSALIVTQLYPLLWLAIYSLKTNEEILSGQFFALPHALQWGNYSAAM 76 Query: 60 TSGSYLKYLSNSVFVTGVTMICVIVLASMVAYAISRFRWKYGNVVMTIFLMGMMIPMQAT 119 SG+Y+KYL NS+ VT +TM+ V+ L+S+V++AISRF+WKYG VM +FL+GMMIPMQAT Sbjct: 77 ESGNYVKYLLNSLKVTLITMVGVLFLSSLVSFAISRFKWKYGQAVMVVFLIGMMIPMQAT 136 Query: 120 LLPLMIIFKNIHVLNTHLSLILPYIAFSTPIAVFILSGFMRDIPHEIEESAFIDGASVYR 179 LLPLMIIFKN+H+LNTH SLILPYIAF TPIAVFILSGFM+ IP+EIEESA +DGA V+R Sbjct: 137 LLPLMIIFKNMHILNTHWSLILPYIAFQTPIAVFILSGFMKSIPNEIEESAIVDGAGVFR 196 Query: 180 IFRSIILPVSIPPVMTVCILTFINIWNEYILAATFISSEKLKTLPFGVYTFVSQYSVNYG 239 IF +IILPVS+PP+MTVCILTFINIWNEYILAATFISSE+LKTLPFGVY+FVSQYSVNYG Sbjct: 197 IFWNIILPVSVPPMMTVCILTFINIWNEYILAATFISSERLKTLPFGVYSFVSQYSVNYG 256 Query: 240 NIGAFLVMGALPVILIYFFLSNKITKGMVAGAVKG 274 IGAFLV+GALPVI+IYF L++KITKGMVAGAVKG Sbjct: 257 AIGAFLVLGALPVIIIYFLLADKITKGMVAGAVKG 291 >B1DHC1.1 B1DHC1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 173/270 (64%) Query: 5 KKGIVYLLFAIPVVTQXXXXXXXXXXXXKTNEEIMDGSFFSFPKSFQWHNYSEAYTSGSY 64 KK +++ F I Q ++ + S +P S QW NY A+ G + Sbjct: 5 KKTAIWIFFLIVAAGQLFPLIWLVDFSFNSSADFYSDSILKWPSSPQWQNYVNAWVDGKF 64 Query: 65 LKYLSNSVFVTGVTMICVIVLASMVAYAISRFRWKYGNVVMTIFLMGMMIPMQATLLPLM 124 LKYL NS+F++ VT++ + L+ ++YA R +WK ++ TI L+G+MIP+ ATLLP Sbjct: 65 LKYLFNSLFISIVTILLTVGLSLTLSYAFIRMQWKLRTLLYTILLLGIMIPIHATLLPNF 124 Query: 125 IIFKNIHVLNTHLSLILPYIAFSTPIAVFILSGFMRDIPHEIEESAFIDGASVYRIFRSI 184 IFK + + +++L LILPY A S P+ F+LSGF+R IP E+EESA +DG S+YRI I Sbjct: 125 AIFKELGLTDSYLGLILPYTAVSVPLGTFMLSGFLRSIPKELEESAVMDGCSIYRIVFQI 184 Query: 185 ILPVSIPPVMTVCILTFINIWNEYILAATFISSEKLKTLPFGVYTFVSQYSVNYGNIGAF 244 I P+ P ++TV + TF+N WNE+I+A+TF+S + LKTLPF V F QYS +YG+ A Sbjct: 185 IAPLLKPALVTVVVTTFLNCWNEFIMASTFLSKDALKTLPFSVMNFTGQYSSDYGSQFAV 244 Query: 245 LVMGALPVILIYFFLSNKITKGMVAGAVKG 274 +V+ ++P I+IY + +ITKG+ AGAVKG Sbjct: 245 MVLTSIPAIIIYAVFNEQITKGVTAGAVKG 274 >A8VR98.1 A8VR98_9BACI ABC-type sugar transport system permease component-like protein Length = 295 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 114/272 (41%), Positives = 171/272 (62%) Query: 3 KFKKGIVYLLFAIPVVTQXXXXXXXXXXXXKTNEEIMDGSFFSFPKSFQWHNYSEAYTSG 62 K K I+Y++ + V Q K N+E+ + + P+ W NY +T G Sbjct: 24 KLLKSILYVILGLIAVVQILPLIWLVLFSLKDNQEVFNLPPLALPQDPNWGNYLRVWTDG 83 Query: 63 SYLKYLSNSVFVTGVTMICVIVLASMVAYAISRFRWKYGNVVMTIFLMGMMIPMQATLLP 122 + Y NS+ VTG +I I+LAS V +AI+R WK +V+ +F++G+MIP+ +TL+P Sbjct: 84 NIGLYFFNSIIVTGSAVILTILLASFVTFAITRMNWKLNKIVLALFMIGLMIPVHSTLIP 143 Query: 123 LMIIFKNIHVLNTHLSLILPYIAFSTPIAVFILSGFMRDIPHEIEESAFIDGASVYRIFR 182 L F NI ++NTH ++IL Y AF+ P+ + IL GF IP E+EE+A +DG S++R+F Sbjct: 144 LFSFFLNIGLMNTHPAIILTYTAFNLPLTIMILLGFYYTIPRELEEAAIVDGCSIHRMFF 203 Query: 183 SIILPVSIPPVMTVCILTFINIWNEYILAATFISSEKLKTLPFGVYTFVSQYSVNYGNIG 242 IILP++ P V T I+ I WNE++ TFISS+ LKTL G+ F+ QYS ++G IG Sbjct: 204 QIILPLTAPVVATTAIINMIYNWNEFVFVNTFISSDSLKTLTVGIQNFIGQYSTDWGAIG 263 Query: 243 AFLVMGALPVILIYFFLSNKITKGMVAGAVKG 274 A LV+ LP+++ + FLSN+I +G+ AG+VKG Sbjct: 264 ATLVISVLPLLIAFVFLSNRIVEGITAGSVKG 295 >A4IP88.1 A4IP88_GEOTN Sugar ABC transporter (Permease) Length = 288 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/274 (41%), Positives = 175/274 (63%) Query: 1 MRKFKKGIVYLLFAIPVVTQXXXXXXXXXXXXKTNEEIMDGSFFSFPKSFQWHNYSEAYT 60 +R+ GI+Y + I + Q KTN+E+ S F+ PKS +W NY A+ Sbjct: 15 LRRIGMGILYFVLVIVALVQLYPLVWLFQLSLKTNQEVFGMSPFALPKSPRWENYINAWF 74 Query: 61 SGSYLKYLSNSVFVTGVTMICVIVLASMVAYAISRFRWKYGNVVMTIFLMGMMIPMQATL 120 G KY NSV+ T V ++ ++LAS V +A++R WK VV+ +F++ MIP+ +TL Sbjct: 75 DGGINKYFLNSVWYTVVAVLLTLILASFVTFALTRMEWKLKGVVLALFMIAYMIPLHSTL 134 Query: 121 LPLMIIFKNIHVLNTHLSLILPYIAFSTPIAVFILSGFMRDIPHEIEESAFIDGASVYRI 180 +PL I+ I++++ +S+IL Y F+ PI + IL GF + +P EIEE+A IDG S+++I Sbjct: 135 IPLFNIYNKINLIDNPVSIILSYTTFNLPITIMILLGFYQSLPREIEEAAVIDGCSIHKI 194 Query: 181 FRSIILPVSIPPVMTVCILTFINIWNEYILAATFISSEKLKTLPFGVYTFVSQYSVNYGN 240 F I LP+++P + T I+ I WNE++ TFISSEK KT+ GV FV QY ++G Sbjct: 195 FFRITLPMTVPILSTTAIINMIYNWNEFVFVNTFISSEKWKTITVGVNNFVGQYLTDWGA 254 Query: 241 IGAFLVMGALPVILIYFFLSNKITKGMVAGAVKG 274 IGA LV+ LP++++Y FLS++I +G+VAG+VKG Sbjct: 255 IGATLVISILPILIVYLFLSDRIIEGLVAGSVKG 288 >B4BMC9.1 B4BMC9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/274 (41%), Positives = 175/274 (63%) Query: 1 MRKFKKGIVYLLFAIPVVTQXXXXXXXXXXXXKTNEEIMDGSFFSFPKSFQWHNYSEAYT 60 +R+ GI+Y + I + Q KTN+E+ S F+ PKS +W NY A+ Sbjct: 15 LRRIGMGILYFVLVIVALVQLYPLVWLFQLSLKTNQEVFGMSPFALPKSPRWENYINAWF 74 Query: 61 SGSYLKYLSNSVFVTGVTMICVIVLASMVAYAISRFRWKYGNVVMTIFLMGMMIPMQATL 120 G KY NSV+ T V ++ ++LAS V +A++R WK VV+ +F++ MIP+ +TL Sbjct: 75 DGGINKYFLNSVWYTVVAVLLTLILASFVTFALTRMEWKLKGVVLALFMIAYMIPLHSTL 134 Query: 121 LPLMIIFKNIHVLNTHLSLILPYIAFSTPIAVFILSGFMRDIPHEIEESAFIDGASVYRI 180 +PL I+ I++++ +S+IL Y F+ PI + IL GF + +P EIEE+A IDG S+++I Sbjct: 135 IPLFNIYNKINLIDNPVSIILSYTTFNLPITIMILLGFYQSLPREIEEAAVIDGCSIHKI 194 Query: 181 FRSIILPVSIPPVMTVCILTFINIWNEYILAATFISSEKLKTLPFGVYTFVSQYSVNYGN 240 F I LP+++P + T I+ I WNE++ TFISSEK KT+ GV FV QY ++G Sbjct: 195 FFRITLPMTVPILSTTAIINMIYNWNEFVFVNTFISSEKWKTITVGVNNFVGQYLTDWGA 254 Query: 241 IGAFLVMGALPVILIYFFLSNKITKGMVAGAVKG 274 IGA LV+ LP++++Y FLS++I +G+VAG+VKG Sbjct: 255 IGATLVISILPILIVYLFLSDRIIEGLVAGSVKG 288 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,409,119,756 Number of extensions: 51754350 Number of successful extensions: 233195 Number of sequences better than 1.0e-05: 7239 Number of HSP's gapped: 228117 Number of HSP's successfully gapped: 7248 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)