BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0472.0031.p
         (244 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DCZ7.1 B1DCZ7_9BACL Integral membrane sensor signal transducti...   191   6e-47

>B1DCZ7.1 B1DCZ7_9BACL Integral membrane sensor signal transduction histidine
           kinase
          Length = 623

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 25  GFHSIHHRLFLLFLFCMXXXXXXXXXXYYNRTTVQLHEKISDLSQKNVSQTAGLFSLLYK 84
           G HSI +RLFLL    M          YY +T   +H KISDL++KNVSQT GLF LL +
Sbjct: 6   GMHSIQNRLFLLLFSSMMTLLILVSFLYYQKTAQIIHSKISDLAEKNVSQTVGLFDLLLE 65

Query: 85  GYDSLSKSLSNNFEMIRLINEX-XXXXXXXAYINEQTITNIIGSIFYSRDDLVGIHVITD 143
           GYDS++KSL++N+E+ RL+ E         + +NE+ ITNIIG+ ++SRDD++GIHV+T+
Sbjct: 66  GYDSVTKSLNSNYELTRLLKEADNEKNISVSVMNERAITNIIGAAYFSRDDIIGIHVMTN 125

Query: 144 KGKIYNYG-NYMNVVDPNYHSQDWYKQLQASSGKMVWLGVYQHSLIDQVEDSPVFAFGRQ 202
            GK+YNY   +  +V+ +Y S DWY +L+ S G+MVWLG+ + S+I+ +   PVF FGRQ
Sbjct: 126 GGKLYNYERRFAGLVNQDYTSADWYSKLKNSKGEMVWLGLMKGSVINSMLPEPVFVFGRQ 185

Query: 203 IYDLNXXXXKKSRSALFSTKPTPSLC 228
           ++DLN    K     L  + P P L 
Sbjct: 186 LFDLN--NYKPVGIVLIESDPNPILS 209


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,338,295,958
Number of extensions: 48130123
Number of successful extensions: 91028
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 91030
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 112
Effective length of database: 1,817,122,223
Effective search space: 203517688976
Effective search space used: 203517688976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)