BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0472.0030.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DCZ7.1 B1DCZ7_9BACL Integral membrane sensor signal transducti...    76   8e-13

>B1DCZ7.1 B1DCZ7_9BACL Integral membrane sensor signal transduction histidine
           kinase
          Length = 623

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 9   TSATDPAPVLETLPSLKNFQHQIVRQEAGRLAVASKLSFSGWWVMSITPDQDLNVELNEM 68
           T      P    LP  K     +V  +  +L VA+K + + W V  +TP  D++ EL + 
Sbjct: 247 TGEPQAVPSFNGLPRPKG-NEIVVDNKTSQLIVAAKTAVAEWTVFGLTPKTDISEELVQT 305

Query: 69  KRYXXXXXXXXXXXXXXXASMVSKTISSPLKKLIREMRQVEIGNFRGMVNVSS 121
           + Y               A+++S+ ISSPLK LIREM+QVE+GNFRG VNV S
Sbjct: 306 RLYLLAVIIAVILLSIMLATLISRNISSPLKLLIREMKQVELGNFRGAVNVKS 358


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 555,120,703
Number of extensions: 14835149
Number of successful extensions: 33885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 33890
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)