BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0029.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCZ7.1 B1DCZ7_9BACL Integral membrane sensor signal transducti... 259 1e-67 B1D8F0.1 B1D8F0_9BACL Signal transduction histidine kinase, LytS 164 7e-39 C5EHM0.1 C5EHM0_9FIRM Histidine kinase internal region 159 2e-37 B1DJR5.1 B1DJR5_9BACL Integral membrane sensor signal transducti... 156 2e-36 C4G6T4.1 C4G6T4_ABIDE Putative uncharacterized protein 155 2e-36 >B1DCZ7.1 B1DCZ7_9BACL Integral membrane sensor signal transduction histidine kinase Length = 623 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/241 (55%), Positives = 167/241 (69%), Gaps = 10/241 (4%) Query: 1 MVRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVL 60 MV RI+ELIER+ LSS+SEKNAEL ALQSQVNPHFLYNTLDMIYWMLDE N++LG ++L Sbjct: 372 MVHRIDELIERITLSSISEKNAELQALQSQVNPHFLYNTLDMIYWMLDERENDRLGRVIL 431 Query: 61 SLSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKM 120 SLS MFRYSS WE+A+ TLR+ELEQ+ HY+ II RL GR+ + +D WL+ VPKM Sbjct: 432 SLSHMFRYSSDWEEASKTTLRQELEQMRHYMTIIENRLVGRVSTEIQVDNIWLDAIVPKM 491 Query: 121 TVQPVIENAVKHGLESLSRQGILKVYT--REEESILKLIVEDNGEGMSTXXXXXXXXXXX 178 T+QPVIENAVK GLE L R G+L+V T EE + L++++EDNG G+ Sbjct: 492 TIQPVIENAVKSGLEPLDRPGLLRVSTIADEEANELRIVIEDNGVGIDEEELKKLQAMLE 551 Query: 179 XDSPKEG--------GKGGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLPIRLE 230 SP G+ GIGL N+HRR+ M+GE YGL+I S G+GT V I +P+ Sbjct: 552 DSSPGRNYNAAQQGRGRRGIGLPNVHRRIVLMYGEPYGLRITSELGKGTTVIIAIPLPAR 611 Query: 231 G 231 G Sbjct: 612 G 612 >B1D8F0.1 B1D8F0_9BACL Signal transduction histidine kinase, LytS Length = 601 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 137/231 (59%), Gaps = 7/231 (3%) Query: 1 MVRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVL 60 M R + R+ S +S+K AE ALQSQ+NPHFLYNTL+ I + E G+ ++ ++ Sbjct: 370 MTRDMFNTQARLYKSELSQKQAEFSALQSQINPHFLYNTLNCISSIGLEYGSREIAQMTS 429 Query: 61 SLSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKM 120 S+S +FRYS + ++ V ++EE + I Y+KII+IR + + + MDI+E L +R PKM Sbjct: 430 SMSKIFRYSIKQDEL--VQIKEEADCIQAYIKIITIRYDNKFAMKMDIEEGLLRMRTPKM 487 Query: 121 TVQPVIENAVKHGLESLSRQGILKVY-TREEESILKLIVEDNGEGMSTXXXXXXXXXXXX 179 +QP++EN+V HGLE + + G L+V + +E+ + + D G+GM Sbjct: 488 ILQPIVENSVYHGLERMDQGGQLEVTGSMDEQGDVYFCIRDTGKGMEPEELAALQAKLAA 547 Query: 180 DSPKEGGKG----GIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLP 226 D P+ G IGL N+H RL+ +FGE YG+ I+S G GT V + +P Sbjct: 548 DYPERAQDGQPSQSIGLTNIHNRLRLLFGESYGITIESRAGYGTTVTVKIP 598 >C5EHM0.1 C5EHM0_9FIRM Histidine kinase internal region Length = 605 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 141/226 (62%), Gaps = 3/226 (1%) Query: 1 MVRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVL 60 MV +I LI +V +++KNAE+ ALQ+Q+NPHFLYNTLD + WML + + ++++ Sbjct: 374 MVDKINTLIRQVYQEKIAQKNAEVQALQAQINPHFLYNTLDSVNWMLIDREEYDISDIII 433 Query: 61 SLSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKM 120 SL S+ RY + E+ A V L E+E + YLKI RLE +L+ + +D+R +VPK+ Sbjct: 434 SLGSLMRYCIEDEN-AFVPLDREVEYVISYLKIQKNRLEDKLEYQVQVDDRLRQEKVPKL 492 Query: 121 TVQPVIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXXXXXXXXD 180 +QP++ENA+ HG+E ++G + + R+ + + VED+G GM T D Sbjct: 493 ILQPMVENAITHGIEPRKQKGKVSILIRDAGDEILVTVEDDGIGM-TPEQLNHLKEELPD 551 Query: 181 SPKEGGKGGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLP 226 KE G GIGL+N+ RR++ +GE+Y ++I+S G+GT + + +P Sbjct: 552 LEKE-GHTGIGLRNVDRRIRLHYGEQYRIRIESVYGKGTSIHLRIP 596 >B1DJR5.1 B1DJR5_9BACL Integral membrane sensor signal transduction histidine kinase Length = 586 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 137/233 (58%), Gaps = 14/233 (6%) Query: 1 MVRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVL 60 MV RI+ELI + ++ K+ E ALQ+Q+NPHFLYNTL+ I W G++Q+ +V Sbjct: 360 MVGRIDELINENYVKQLTIKDTEFKALQAQINPHFLYNTLESINWSAKIAGHKQISIMVE 419 Query: 61 SLSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKM 120 SL + R S+ VTL +EL +GHY+ I IR E RL I +R LN+ VPK+ Sbjct: 420 SLGYLLR-STISHKQPTVTLEDELRLVGHYIAIQHIRFEERLVFENRIPDRLLNMYVPKL 478 Query: 121 TVQPVIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXXXXXXXXD 180 ++QP++ENA+ +GLE + ++ + E E + + V DNG G++ D Sbjct: 479 SLQPLVENAIHYGLEQMIEACVITITAEEHEGGIAITVADNGPGLAP---------DVID 529 Query: 181 SPKEG---GKG-GIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLPIRL 229 + G +G GIGL+N+ R++ +FGE YG++++S P + T++ + LPI + Sbjct: 530 QLRSGEIEPRGTGIGLRNIEDRIKMLFGEAYGIRVESVPQQDTRITLYLPIEM 582 >C4G6T4.1 C4G6T4_ABIDE Putative uncharacterized protein Length = 593 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 134/234 (57%), Gaps = 2/234 (0%) Query: 2 VRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVLS 61 ++ I EL+++V S + K E LQSQ+NPHFLYNTLD I W+ +E ++ LV + Sbjct: 355 IKEINELMQKVTQSEILNKEMEFKTLQSQMNPHFLYNTLDAINWLAFKEKQTEICNLVAA 414 Query: 62 LSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKMT 121 +SS+ R +S + +T+ +EL+ + +Y+ I IR + R + DIDE L VPK+ Sbjct: 415 ISSLIR-ASISNKKSIITIEQELDYVKNYIYIQHIRYKDRFDTIYDIDESLLKQAVPKLI 473 Query: 122 VQPVIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXXXXX-XXXD 180 +QP++ENA+ HG+E+ + +L + + E + +IV+D G GM+ + Sbjct: 474 IQPIVENAIIHGIENSKNKNLLYISIKRENECIVIIVKDTGIGMTDEKVSELLKEPLNAE 533 Query: 181 SPKEGGKGGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLPIRLEGDTF 234 ++ +GL +H+R+Q M+G+ YGL + S GEGT V + +P + + F Sbjct: 534 GDEQKAHTNLGLYAVHKRIQLMYGDLYGLAVHSQAGEGTTVTLHIPFAKKQEIF 587 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,303,667,545 Number of extensions: 49692106 Number of successful extensions: 131126 Number of sequences better than 1.0e-05: 2079 Number of HSP's gapped: 127355 Number of HSP's successfully gapped: 2079 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)