BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0022.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PFU1.1 C1PFU1_BACCO Two component transcriptional regulator, w... 243 8e-63 Q92BX8.1 Q92BX8_LISMO Two-component response regulator 218 4e-55 Q7ANY9.1 Q7ANY9_LISIN Two-component response regulator 218 4e-55 Q71ZU3.1 Q71ZU3_LISMF DNA-binding response regulator 218 4e-55 C1L2T3.1 C1L2T3_LISMC Two-component response regulator 218 4e-55 >C1PFU1.1 C1PFU1_BACCO Two component transcriptional regulator, winged helix family Length = 227 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 124/227 (54%), Positives = 156/227 (68%), Gaps = 4/227 (1%) Query: 10 MNRILLIEDEKNLARFIELELQHVSYSVTLVQDXXXXXXXXXXXXWDXXXXXXXXXXXNG 69 M RILL+EDEKNLARFIELEL+H Y V + D WD NG Sbjct: 1 MKRILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNG 60 Query: 70 IELCRRLRQEKQTPVIIITARDGLSDKINGLDSGADDYIAKPFAIEELLARMRSLLRRTG 129 +E+CRRLRQEK+TPVI+ITARD + D+++GLD GADDYI KPFAIEELLAR+R++ RR Sbjct: 61 LEVCRRLRQEKETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRME 120 Query: 130 SLCQGQLLVC----QDLQLDPLGRTLTKSGEALELTKREFDILLVLMQNMGRVMTREKLM 185 + + +DL L+ R + K+G+ +ELTKRE+D+LL L++N VMTRE L+ Sbjct: 121 YAEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALL 180 Query: 186 ESVWGYETEVDMKVVDVYISYLRGKIDTPGEPSIVQTLRGLGYVIRK 232 VWGYETEV+ VVDVYI YLR KIDT GE S +QT+RG GYV+R+ Sbjct: 181 NKVWGYETEVETNVVDVYIRYLRNKIDTEGEDSYIQTVRGTGYVMRE 227 >Q92BX8.1 Q92BX8_LISMO Two-component response regulator Length = 226 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 120/225 (53%), Positives = 155/225 (68%), Gaps = 3/225 (1%) Query: 10 MNRILLIEDEKNLARFIELELQHVSYSVTLVQDXXXXXXXXXXXXWDXXXXXXXXXXXNG 69 MNRIL++EDEKNLARFIELELQH +Y + D WD NG Sbjct: 1 MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNG 60 Query: 70 IELCRRLRQEKQTPVIIITARDGLSDKINGLDSGADDYIAKPFAIEELLARMRSLLRRTG 129 +E+CRR+RQ KQTP+I+ITARD + D+++GLD GADDYI KPFAIEELLAR+RSLLRR Sbjct: 61 VEVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVE 120 Query: 130 SLCQGQ---LLVCQDLQLDPLGRTLTKSGEALELTKREFDILLVLMQNMGRVMTREKLME 186 + Q L ++L ++ R + + E ++LTKRE+++LL LM+N+ V+TRE L+ Sbjct: 121 NAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLN 180 Query: 187 SVWGYETEVDMKVVDVYISYLRGKIDTPGEPSIVQTLRGLGYVIR 231 VWGYETEV+ VVDVY+ YLR KID P E S +QT+RG GYV+R Sbjct: 181 KVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVMR 225 >Q7ANY9.1 Q7ANY9_LISIN Two-component response regulator Length = 226 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 120/225 (53%), Positives = 155/225 (68%), Gaps = 3/225 (1%) Query: 10 MNRILLIEDEKNLARFIELELQHVSYSVTLVQDXXXXXXXXXXXXWDXXXXXXXXXXXNG 69 MNRIL++EDEKNLARFIELELQH +Y + D WD NG Sbjct: 1 MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNG 60 Query: 70 IELCRRLRQEKQTPVIIITARDGLSDKINGLDSGADDYIAKPFAIEELLARMRSLLRRTG 129 +E+CRR+RQ KQTP+I+ITARD + D+++GLD GADDYI KPFAIEELLAR+RSLLRR Sbjct: 61 VEVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVE 120 Query: 130 SLCQGQ---LLVCQDLQLDPLGRTLTKSGEALELTKREFDILLVLMQNMGRVMTREKLME 186 + Q L ++L ++ R + + E ++LTKRE+++LL LM+N+ V+TRE L+ Sbjct: 121 NAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLN 180 Query: 187 SVWGYETEVDMKVVDVYISYLRGKIDTPGEPSIVQTLRGLGYVIR 231 VWGYETEV+ VVDVY+ YLR KID P E S +QT+RG GYV+R Sbjct: 181 KVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVMR 225 >Q71ZU3.1 Q71ZU3_LISMF DNA-binding response regulator Length = 226 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 120/225 (53%), Positives = 155/225 (68%), Gaps = 3/225 (1%) Query: 10 MNRILLIEDEKNLARFIELELQHVSYSVTLVQDXXXXXXXXXXXXWDXXXXXXXXXXXNG 69 MNRIL++EDEKNLARFIELELQH +Y + D WD NG Sbjct: 1 MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNG 60 Query: 70 IELCRRLRQEKQTPVIIITARDGLSDKINGLDSGADDYIAKPFAIEELLARMRSLLRRTG 129 +E+CRR+RQ KQTP+I+ITARD + D+++GLD GADDYI KPFAIEELLAR+RSLLRR Sbjct: 61 VEVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVE 120 Query: 130 SLCQGQ---LLVCQDLQLDPLGRTLTKSGEALELTKREFDILLVLMQNMGRVMTREKLME 186 + Q L ++L ++ R + + E ++LTKRE+++LL LM+N+ V+TRE L+ Sbjct: 121 NAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLN 180 Query: 187 SVWGYETEVDMKVVDVYISYLRGKIDTPGEPSIVQTLRGLGYVIR 231 VWGYETEV+ VVDVY+ YLR KID P E S +QT+RG GYV+R Sbjct: 181 KVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVMR 225 >C1L2T3.1 C1L2T3_LISMC Two-component response regulator Length = 226 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 120/225 (53%), Positives = 155/225 (68%), Gaps = 3/225 (1%) Query: 10 MNRILLIEDEKNLARFIELELQHVSYSVTLVQDXXXXXXXXXXXXWDXXXXXXXXXXXNG 69 MNRIL++EDEKNLARFIELELQH +Y + D WD NG Sbjct: 1 MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNG 60 Query: 70 IELCRRLRQEKQTPVIIITARDGLSDKINGLDSGADDYIAKPFAIEELLARMRSLLRRTG 129 +E+CRR+RQ KQTP+I+ITARD + D+++GLD GADDYI KPFAIEELLAR+RSLLRR Sbjct: 61 VEVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVE 120 Query: 130 SLCQGQ---LLVCQDLQLDPLGRTLTKSGEALELTKREFDILLVLMQNMGRVMTREKLME 186 + Q L ++L ++ R + + E ++LTKRE+++LL LM+N+ V+TRE L+ Sbjct: 121 NAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLN 180 Query: 187 SVWGYETEVDMKVVDVYISYLRGKIDTPGEPSIVQTLRGLGYVIR 231 VWGYETEV+ VVDVY+ YLR KID P E S +QT+RG GYV+R Sbjct: 181 KVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVMR 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,152,856,478 Number of extensions: 39562832 Number of successful extensions: 171087 Number of sequences better than 1.0e-05: 18601 Number of HSP's gapped: 144918 Number of HSP's successfully gapped: 18616 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)