BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0021.p (472 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7H7Z6.1 B7H7Z6_BACC4 Sensor protein EC=2.7.13.3 426 e-117 Q737H2.1 Q737H2_BACC1 Sensor protein EC=2.7.13.3 426 e-117 A9VHI2.1 A9VHI2_BACWK Sensor protein EC=2.7.13.3 425 e-117 C3ELA1.1 C3ELA1_BACTK Putative uncharacterized protein 423 e-116 Q4MIV3.1 Q4MIV3_BACCE Sensor protein EC=2.7.13.3 420 e-115 >B7H7Z6.1 B7H7Z6_BACC4 Sensor protein EC=2.7.13.3 Length = 471 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/460 (44%), Positives = 316/460 (68%), Gaps = 6/460 (1%) Query: 11 LSVRWKLAIWSSVLLCVLFLGYNGVQYFVINHWMFHQEQKAVHKNVEEIQEYFRAESGT- 69 L ++WKL +WS+ L+ +LF+ Y+ +Q+ VIN W EQK +++ V EI YF+ ++ T Sbjct: 12 LPIKWKLTLWSTTLVFILFILYSALQFIVINKWTIDYEQKQINRQVTEIAAYFQDKNDTL 71 Query: 70 -DRKIAGSRSFIESINVSHQMIRILNANGTPILTVSDQLPEDWVQPQTAVKTDTTSVWHE 128 + S+ F+ ++ HQMIRI++ +G PI+TVS E W++P+ +K ++ H Sbjct: 72 SSKTFENSKDFLNNMIDKHQMIRIIDMDGEPIITVSRDFNETWIKPKQVIKDESFIKRHL 131 Query: 129 EEHLLLIRSPLRTASFTGTIEIVNNLESSDQLSDMLLGVMIAGWLGAIVISAAGGVFLSR 188 E+ +L+ R P++T FTGTIE+ NLE+ D L ++L VM+ + ++ S GG+ +++ Sbjct: 132 EDRILVKRIPIKTKEFTGTIELTKNLETFDYLLKVILVVMLIAGIFGLIFSFLGGILITK 191 Query: 189 LLLRPIQSLSDTMMRIKQNGLQERVGVPGSNNDELAQLARVFNDLMEQLETSFYNQKQFA 248 LL +Q+++DTM RIK+NGL ERV V NNDELA+L+ +FN++M+++ETSF QKQF Sbjct: 192 KLLSSVQNITDTMKRIKKNGLNERVPV-RENNDELAKLSFLFNEMMDEVETSFAQQKQFV 250 Query: 249 QDASHELRTPISIIEGHISLLSRWGKHDPEILEESLKVSLQELGRLKAIVNELLELTRAE 308 +DASHELRTP++II GH+++L+RWGK+DP +L++SL+ SL+E+ RL +V+ELLEL+RAE Sbjct: 251 EDASHELRTPLTIIHGHLAMLNRWGKNDPAVLDKSLQSSLKEVERLNKLVSELLELSRAE 310 Query: 309 EKSRDP-HDFPCEVQDTLQYTLRNFALLHPDFEFTQNLNKLDGVVIHILPNHLEQILLIL 367 + P P V L++ +NF ++ DF+F + D + + ++LEQI++I+ Sbjct: 311 SEQMYPIAAEPVHVNSVLKHVTQNFIVIQSDFQFDMKFSD-DAAYVSMPSSYLEQIIIII 369 Query: 368 LDNAVKYSGSL-RAIRLNGMVVRSQVQIRVEDSGIGVPEKDLPLVFQRFYRVDKSRSREQ 426 +DNAVKY+ + + I + + +V IRV D G G+PE DLP V RFYRVDK+RSR+Q Sbjct: 370 MDNAVKYTKEVNKYICIESSLQSGKVTIRVIDHGAGIPESDLPFVLNRFYRVDKARSRKQ 429 Query: 427 GGSGLGLAIAERLVAKYGGSIAIASKPGQGTAVTLTFPIV 466 GG+GLGL+IA+RLV KY G+I I SK +GT VT+T P + Sbjct: 430 GGNGLGLSIAKRLVEKYNGAIKIESKENEGTIVTITLPCI 469 >Q737H2.1 Q737H2_BACC1 Sensor protein EC=2.7.13.3 Length = 471 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/460 (46%), Positives = 317/460 (68%), Gaps = 6/460 (1%) Query: 11 LSVRWKLAIWSSVLLCVLFLGYNGVQYFVINHWMFHQEQKAVHKNVEEIQEYFRAESGT- 69 L ++WKL +WS+ L+ +LF+ Y+ +Q+ VIN W EQK +++ V EI Y++ +S T Sbjct: 12 LPIKWKLTLWSTTLVFILFILYSTLQFIVINKWTIDYEQKQINRQVTEIAAYYQDKSDTL 71 Query: 70 -DRKIAGSRSFIESINVSHQMIRILNANGTPILTVSDQLPEDWVQPQTAVKTDTTSVWHE 128 + S+ F+ ++ HQMIR++ +G PI+TVS E W++P+ ++ + H Sbjct: 72 SIKTFENSKDFLNNMIDKHQMIRVIGMDGKPIVTVSRDFNETWIKPKQVLQDELFIKRHV 131 Query: 129 EEHLLLIRSPLRTASFTGTIEIVNNLESSDQLSDMLLGVMIAGWLGAIVISAAGGVFLSR 188 E+ +L+ R P++T FTGTIE+ NLE+ D L ++L VMI + +++S GGV +++ Sbjct: 132 EDRILVKRIPIQTKEFTGTIELTKNLEAFDHLLKIILVVMIIAGICGLILSFLGGVLITK 191 Query: 189 LLLRPIQSLSDTMMRIKQNGLQERVGVPGSNNDELAQLARVFNDLMEQLETSFYNQKQFA 248 LL IQ++++TM RIK+NGL ERV V NNDELA+L+ +FN++M+++ETSF QKQF Sbjct: 192 KLLSSIQNITNTMKRIKKNGLNERVPV-RENNDELAKLSFLFNEMMDEVETSFTQQKQFV 250 Query: 249 QDASHELRTPISIIEGHISLLSRWGKHDPEILEESLKVSLQELGRLKAIVNELLELTRAE 308 +DASHELRTP++II+GH+S+L+RWGK+DP +L++SL+ SL+E+ RL +V ELLEL+RAE Sbjct: 251 EDASHELRTPLTIIQGHLSMLNRWGKNDPAVLDKSLQSSLKEVDRLNKLVLELLELSRAE 310 Query: 309 EKSRDP-HDFPCEVQDTLQYTLRNFALLHPDFEFTQNLNKLDGVVIHILPNHLEQILLIL 367 + P P V L+ +NFA+L +F+F L + D + I ++LEQI++I+ Sbjct: 311 SEQMHPIAADPVHVNSILKQVTQNFAVLQTEFQFDMKLGE-DSAYVSIPSSYLEQIIIIV 369 Query: 368 LDNAVKYSGSL-RAIRLNGMVVRSQVQIRVEDSGIGVPEKDLPLVFQRFYRVDKSRSREQ 426 LDNAVKY+ + + I + V +V+IR+ D G G+PE DLP V RFYRVDK+RSR+Q Sbjct: 370 LDNAVKYTKEVNKYICIESSVQSGKVKIRIIDRGAGIPEADLPFVLNRFYRVDKARSRKQ 429 Query: 427 GGSGLGLAIAERLVAKYGGSIAIASKPGQGTAVTLTFPIV 466 GG+GLGL+IA+RLV KY G+I I SK G+GT VT+ P V Sbjct: 430 GGNGLGLSIAKRLVEKYNGTIRIESKEGEGTIVTIILPTV 469 >A9VHI2.1 A9VHI2_BACWK Sensor protein EC=2.7.13.3 Length = 472 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/463 (45%), Positives = 319/463 (68%), Gaps = 10/463 (2%) Query: 8 LSRLSVRWKLAIWSSVLLCVLFLGYNGVQYFVINHWMFHQEQKAVHKNVEEIQEYF--RA 65 + L ++WKL +WS+ L+ +LF+ Y+ +Q+ VIN W EQK +++ + EI YF + Sbjct: 9 IRNLPIKWKLTLWSTTLVFILFILYSTLQFIVINKWTIDYEQKQINRQLTEIAAYFQDKN 68 Query: 66 ESGTDRKIAGSRSFIESINVSHQMIRILNANGTPILTVSDQLPEDWVQPQTAVKTDTTSV 125 E+ + + S+ F+ ++ HQMIRI+ +G PI+TVS E W++P+ + ++ Sbjct: 69 ETLSSKTFENSKEFLNNMIDKHQMIRIIGNDGKPIVTVSRDFNEAWIKPKQVTQDESLIK 128 Query: 126 WHEEEHLLLIRSPLRTASFTGTIEIVNNLESSDQLSDMLLGVMIAGWLGAIVISAAGGVF 185 H E+ +L+ R P++T FTGTIE+ NLE+ D L ++L VM+ + +V S GG+ Sbjct: 129 RHIEDRILVERIPIQTKKFTGTIELTKNLETFDHLLKIILVVMVFAGICGLVFSFLGGIL 188 Query: 186 LSRLLLRPIQSLSDTMMRIKQNGLQERVGVPGSNNDELAQLARVFNDLMEQLETSFYNQK 245 +++ LL +Q+++DTM RIK+NGL ERV V NNDELA+L+ +FN++M+++ETSF QK Sbjct: 189 ITKKLLSSVQNITDTMKRIKKNGLNERVPVR-ENNDELAKLSILFNEMMDEVETSFTQQK 247 Query: 246 QFAQDASHELRTPISIIEGHISLLSRWGKHDPEILEESLKVSLQELGRLKAIVNELLELT 305 QF +DASHELRTP++II+GH+S+L+RWGK+DP IL++SL+ SL+E+ RL +V+ELLEL+ Sbjct: 248 QFVEDASHELRTPLTIIQGHLSMLNRWGKNDPAILDKSLQSSLKEVDRLNKLVSELLELS 307 Query: 306 RAEEKSRDPHDFPCE---VQDTLQYTLRNFALLHPDFEFTQNLNKLDGVVIHILPNHLEQ 362 RAE S H E V L+ +NFA+L DF+F L+ D + I ++LEQ Sbjct: 308 RAE--SEQIHPIAAERVHVNSVLKQVTQNFAVLQTDFQFDMKLDA-DEAYVSIPSSYLEQ 364 Query: 363 ILLILLDNAVKYS-GSLRAIRLNGMVVRSQVQIRVEDSGIGVPEKDLPLVFQRFYRVDKS 421 I++I++DNAVKY+ G+ + I + + +++IR+ D G G+PE DLP V RFYRVDK+ Sbjct: 365 IIIIVMDNAVKYTKGANKYICIESSMRSGKMKIRIIDHGTGIPEADLPFVLNRFYRVDKA 424 Query: 422 RSREQGGSGLGLAIAERLVAKYGGSIAIASKPGQGTAVTLTFP 464 RSR+QGG+GLGL+IA+RLV KY G+I + SK +GT VT+TFP Sbjct: 425 RSRKQGGNGLGLSIAKRLVEKYNGAIQLESKENEGTIVTITFP 467 >C3ELA1.1 C3ELA1_BACTK Putative uncharacterized protein Length = 466 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 206/463 (44%), Positives = 316/463 (68%), Gaps = 6/463 (1%) Query: 8 LSRLSVRWKLAIWSSVLLCVLFLGYNGVQYFVINHWMFHQEQKAVHKNVEEIQEYFRAES 67 + L ++WKL +WS+ L+ +LF+ Y+ +Q+ VIN W EQK +++ V EI YF+ ++ Sbjct: 4 IRNLPIKWKLTLWSTTLVFILFILYSALQFIVINKWTIDYEQKQINRQVTEIAAYFQDKN 63 Query: 68 GT--DRKIAGSRSFIESINVSHQMIRILNANGTPILTVSDQLPEDWVQPQTAVKTDTTSV 125 T + S+ F+ ++ HQMIRI++ +G PI+TVS E W++P+ +K ++ Sbjct: 64 DTLSSKTFKNSKDFLNNMIDKHQMIRIIDMDGEPIITVSRDFNETWIKPKQVIKDESFIK 123 Query: 126 WHEEEHLLLIRSPLRTASFTGTIEIVNNLESSDQLSDMLLGVMIAGWLGAIVISAAGGVF 185 H E+ +L+ R P++T FTGTIE+ NLE+ D L ++L VM+ + ++ S GG+ Sbjct: 124 RHLEDRILVKRIPIKTKEFTGTIELTKNLETFDYLLKVILVVMLIAGIFGLIFSFLGGIL 183 Query: 186 LSRLLLRPIQSLSDTMMRIKQNGLQERVGVPGSNNDELAQLARVFNDLMEQLETSFYNQK 245 +++ LL +Q+++DTM RIK+NGL ERV V NNDELA+L+ +FN++M+++ETSF QK Sbjct: 184 ITKKLLSSVQNITDTMKRIKKNGLNERVPV-RENNDELAKLSFLFNEMMDEVETSFTQQK 242 Query: 246 QFAQDASHELRTPISIIEGHISLLSRWGKHDPEILEESLKVSLQELGRLKAIVNELLELT 305 QF +DASHELRTP++II GH+++L+RWGK+DP +L++SL+ SL+E+ RL +V+ELLEL+ Sbjct: 243 QFVEDASHELRTPLTIIHGHLAMLNRWGKNDPAVLDKSLQSSLKEVVRLNKLVSELLELS 302 Query: 306 RAEEKSRDP-HDFPCEVQDTLQYTLRNFALLHPDFEFTQNLNKLDGVVIHILPNHLEQIL 364 RAE + P P V L++ +NF +L +F+F D + + ++LEQI+ Sbjct: 303 RAESEQLHPIAAEPVHVNSVLKHVTQNFVVLQSNFQFDMKFGD-DEAYVSMPSSYLEQII 361 Query: 365 LILLDNAVKYSGSL-RAIRLNGMVVRSQVQIRVEDSGIGVPEKDLPLVFQRFYRVDKSRS 423 +I++DNAVKY+ + + I + + +V IRV D G G+PE DLP V RFYRVDK+RS Sbjct: 362 IIIMDNAVKYTKEVNKYICIESSLHSGKVTIRVIDHGAGIPESDLPFVLNRFYRVDKARS 421 Query: 424 REQGGSGLGLAIAERLVAKYGGSIAIASKPGQGTAVTLTFPIV 466 R+QGG+GLGL+IA+RLV KY G+I I SK +GT VT+T P + Sbjct: 422 RKQGGNGLGLSIAKRLVEKYNGAIKIESKENEGTIVTITLPCI 464 >Q4MIV3.1 Q4MIV3_BACCE Sensor protein EC=2.7.13.3 Length = 471 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/460 (45%), Positives = 314/460 (68%), Gaps = 6/460 (1%) Query: 11 LSVRWKLAIWSSVLLCVLFLGYNGVQYFVINHWMFHQEQKAVHKNVEEIQEYF--RAESG 68 L ++WKL +WS+ L+ +LF+ Y+ +Q+ VIN W EQK +++ V EI YF + +S Sbjct: 12 LPIKWKLTLWSTTLVFILFILYSALQFIVINKWTIDYEQKQINRQVTEIAAYFQDKNDSL 71 Query: 69 TDRKIAGSRSFIESINVSHQMIRILNANGTPILTVSDQLPEDWVQPQTAVKTDTTSVWHE 128 + + + F+ ++ HQMIRI+ +G PI+TVS + E W++P+ + H Sbjct: 72 SSKTFENRKDFLNNMIDKHQMIRIIGMDGKPIVTVSREFNESWIKPKQVTHEELFIKRHV 131 Query: 129 EEHLLLIRSPLRTASFTGTIEIVNNLESSDQLSDMLLGVMIAGWLGAIVISAAGGVFLSR 188 E+ +L+ R P++T FTGTIE+ NLE+ D L ++L VM+ + ++ S GG+ +++ Sbjct: 132 EDRILVKRIPIQTKEFTGTIELTKNLEAFDHLLKIILVVMVIAGICGLIFSFLGGLLITK 191 Query: 189 LLLRPIQSLSDTMMRIKQNGLQERVGVPGSNNDELAQLARVFNDLMEQLETSFYNQKQFA 248 LL +Q+++DTM RIK+NGL ERV V NNDELA+L+ +FN++M+++ETSF QKQF Sbjct: 192 KLLSSVQNITDTMKRIKKNGLNERVPVR-ENNDELAKLSFLFNEMMDEVETSFTQQKQFV 250 Query: 249 QDASHELRTPISIIEGHISLLSRWGKHDPEILEESLKVSLQELGRLKAIVNELLELTRAE 308 +DASHELRTP++II+GH+S+L+RWGK+DP +L++SL+ SL+E+ RL +V ELLEL+RAE Sbjct: 251 EDASHELRTPLTIIQGHLSMLNRWGKNDPAVLDKSLQSSLKEVDRLNKLVLELLELSRAE 310 Query: 309 -EKSRDPHDFPCEVQDTLQYTLRNFALLHPDFEFTQNLNKLDGVVIHILPNHLEQILLIL 367 E+ P V L+ +NFA+L +F+F L+ D + I ++LEQI++I+ Sbjct: 311 SEQMYAIAADPVHVNSILKQVTQNFAVLQTEFQFDTKLDG-DAAYVSIPSSYLEQIIIIV 369 Query: 368 LDNAVKYSG-SLRAIRLNGMVVRSQVQIRVEDSGIGVPEKDLPLVFQRFYRVDKSRSREQ 426 +DNAVKY+ + I + V +V+IR+ D G G+PE DLP V RFYRVDK+RSR+Q Sbjct: 370 MDNAVKYTKEDNQYICIESSVQAGKVKIRIIDRGAGIPEADLPFVLNRFYRVDKARSRKQ 429 Query: 427 GGSGLGLAIAERLVAKYGGSIAIASKPGQGTAVTLTFPIV 466 GG+GLGL+IA+RL+ KY G+I I SK G+GT VT+T P V Sbjct: 430 GGNGLGLSIAKRLIEKYNGTIQIESKEGEGTIVTITLPTV 469 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,695,055,855 Number of extensions: 110062778 Number of successful extensions: 437987 Number of sequences better than 1.0e-05: 28183 Number of HSP's gapped: 402338 Number of HSP's successfully gapped: 28370 Length of query: 472 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 333 Effective length of database: 1,751,175,118 Effective search space: 583141314294 Effective search space used: 583141314294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)