BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0472.0016.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7GSN3.1 A7GSN3_BACCN Regulatory protein GntR HTH                     139   8e-32
C0GC76.1 C0GC76_9FIRM Transcriptional regulator, GntR family          135   1e-30
B3KIQ9.1 B3KIQ9_9BACI Regulatory protein GntR HTH                     133   6e-30
Q634W1.1 Q634W1_BACCZ Transcriptional regulator, GntR family          132   1e-29
C2VGT8.1 C2VGT8_BACCE Transcriptional regulator, GntR                 132   1e-29

>A7GSN3.1 A7GSN3_BACCN Regulatory protein GntR HTH
          Length = 124

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 90/110 (81%)

Query: 1   MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60
           MNI+IS++S +PIY QI+ Q+RQLIL G L  G  LPSIR LAKELQISVITTKRAYEEL
Sbjct: 1   MNIIISNSSPDPIYEQISKQLRQLILNGGLKGGEQLPSIRSLAKELQISVITTKRAYEEL 60

Query: 61  EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGMEY 110
           E+EG I ++ GKG++VS  + E IREQRLR++E K++E+++ES+LL + +
Sbjct: 61  EKEGYIETVAGKGTYVSEKNSELIREQRLRLLESKVEEVVNESKLLQLSF 110


>C0GC76.1 C0GC76_9FIRM Transcriptional regulator, GntR family
          Length = 124

 Score =  135 bits (340), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 89/108 (82%)

Query: 1   MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60
           M I+IS+ S EP+Y Q+  Q+R+ +L+GEL +G+ LPSIR LAK+LQISVITTKRAYEEL
Sbjct: 1   MRIIISNASDEPLYEQVARQIRESVLKGELKAGSALPSIRTLAKDLQISVITTKRAYEEL 60

Query: 61  EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108
           E+EG + ++ GKGSFV+  ++E +RE+RLRI+E KL EI+D+SR+L +
Sbjct: 61  EQEGFVETVPGKGSFVALQNKELLREKRLRIIEEKLAEIVDDSRVLNI 108


>B3KIQ9.1 B3KIQ9_9BACI Regulatory protein GntR HTH
          Length = 131

 Score =  133 bits (334), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 88/109 (80%)

Query: 1   MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60
           + I++S + GEPIY QI  Q+RQ I++GE+  G PLPSIRQLAK+L ISVITTKRAY EL
Sbjct: 6   IQIILSHSGGEPIYLQIERQIRQSIMRGEMKPGEPLPSIRQLAKDLGISVITTKRAYSEL 65

Query: 61  EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGME 109
           E  GLI S+VG+GSFVSG +Q+ IREQRLR++E K+++I++E R + +E
Sbjct: 66  EAVGLIESMVGRGSFVSGGNQDMIREQRLRLIEDKIRDILEECRSIPIE 114


>Q634W1.1 Q634W1_BACCZ Transcriptional regulator, GntR family
          Length = 124

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 85/108 (78%)

Query: 1   MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60
           MNI+IS++S +PIY QI  Q+ QLIL G L  G  LPSIR LAKELQISVITTKRAYEEL
Sbjct: 1   MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRSLAKELQISVITTKRAYEEL 60

Query: 61  EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108
           E+EG I ++ GKG++VS  + E ++EQRLR++E K +EI++ES+ L +
Sbjct: 61  EKEGYIETVAGKGTYVSHKNNELLKEQRLRLLESKAEEIVNESKALQL 108


>C2VGT8.1 C2VGT8_BACCE Transcriptional regulator, GntR
          Length = 124

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 86/108 (79%)

Query: 1   MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60
           MNI+IS++S +PIYAQI  Q+ QLIL G L  G  LPSIR LAKELQISVITTKRAYEEL
Sbjct: 1   MNIIISNSSQDPIYAQIRKQLSQLILNGGLKGGDQLPSIRSLAKELQISVITTKRAYEEL 60

Query: 61  EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108
           E+EG I ++ GKG++VS  + E ++EQRLR++E K +EI+ ES++L +
Sbjct: 61  EKEGYIETVAGKGTYVSRKNNELLKEQRLRLLESKAEEIVRESKVLQL 108


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.136    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 585,104,136
Number of extensions: 22272421
Number of successful extensions: 91786
Number of sequences better than 1.0e-05: 1826
Number of HSP's gapped: 92033
Number of HSP's successfully gapped: 1826
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)