BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0015.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIR0.1 B3KIR0_9BACI ABC transporter related 326 2e-87 B1HMQ1.1 B1HMQ1_LYSSC Bacitracin transport ATP-binding protein 317 1e-84 A8MMA0.1 A8MMA0_ALKOO ABC transporter related 316 1e-84 Q62ZI2.1 Q62ZI2_BACLD ABC transporter,ATP/GTP-binding site motif... 313 2e-83 Q65P43.1 Q65P43_BACLD Putative uncharacterized protein 312 2e-83 >B3KIR0.1 B3KIR0_9BACI ABC transporter related Length = 306 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/285 (54%), Positives = 209/285 (73%) Query: 4 VIKLQGLSKSYDRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEIQLF 63 +++ LSK Y F L DISL I +GYITGLIGPNGAGK++LI+ IMGMV PD G+I + Sbjct: 14 AMQINHLSKKYPSFALNDISLLIPKGYITGLIGPNGAGKSTLIRSIMGMVVPDSGQIVVN 73 Query: 64 GQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFKLPP 123 G+ A+ K+ IG+VSDENI+YE+LT+ + R+ PFY RW+ + F+LP Sbjct: 74 GRRLRSDDASYKEEIGFVSDENIFYEYLTLNQIIRMTSPFYKRWNSTRMDQLMRMFELPG 133 Query: 124 GKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEKKSI 183 KK+KD SKGMK+KFSIA+A++H +LI+DEPT+GLDP+FRRELL+LLS+ IQDE ++I Sbjct: 134 RKKLKDCSKGMKMKFSIAMAMAHEPRILILDEPTAGLDPVFRRELLQLLSDFIQDETRTI 193 Query: 184 VFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDVRRWFIGLR 243 +FSTHNT DLDRIADYI FI+ GR+VF+E ++ + +KY++VKG +LLD DVR+ F GL+ Sbjct: 194 LFSTHNTDDLDRIADYITFIHRGRIVFSEGKDEIIDKYVIVKGSSDLLDPDVRKQFTGLK 253 Query: 244 ESGVGFEGLIGNRVEGERYFKDTAICETPTLEEIMYFTVKGSEAH 288 E+ GFE L NR + F D+ + E P LE+IMY+T KG H Sbjct: 254 ETPYGFEALSANRESAHKLFGDSVLYERPALEDIMYYTSKGDAVH 298 >B1HMQ1.1 B1HMQ1_LYSSC Bacitracin transport ATP-binding protein Length = 285 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/284 (52%), Positives = 209/284 (73%) Query: 1 MSDVIKLQGLSKSYDRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEI 60 M +VI+LQ + KS++ F+++D S+ +K+G++TG IG NGAGK++ IKMIM ++ D G I Sbjct: 1 MENVIELQHIQKSFNGFQIKDFSIHVKKGFVTGFIGGNGAGKSTTIKMIMNLLQQDSGTI 60 Query: 61 QLFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFK 120 +FG+N+ +H+ K+RIG+V DENI+YE++T+KDMKR+I P Y RWD+ + Y E+F+ Sbjct: 61 SIFGKNYDKHEKEIKERIGFVYDENIFYENITLKDMKRIIKPAYKRWDDEAFQHYVEQFE 120 Query: 121 LPPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEK 180 LP K +K SKGMK+K S+A+AL+H A+L+IMDEPTSGLDPIFRRELL +L E +QDE Sbjct: 121 LPLNKNMKTFSKGMKMKASLAIALAHHAELIIMDEPTSGLDPIFRRELLNILHELMQDED 180 Query: 181 KSIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDVRRWFI 240 K+I FSTH T DLDRIADYI FI+ G +F + + E+Y +VKG +LLDR+ + F+ Sbjct: 181 KTIFFSTHITTDLDRIADYITFIHNGEHIFTKEFYKIQEEYAIVKGTLDLLDRETEQEFV 240 Query: 241 GLRESGVGFEGLIGNRVEGERYFKDTAICETPTLEEIMYFTVKG 284 LR++ GFE L N+ F DT + E PTLE+IMY+T KG Sbjct: 241 SLRKTNRGFEALTTNKHRVATIFGDTVVIEKPTLEDIMYYTKKG 284 >A8MMA0.1 A8MMA0_ALKOO ABC transporter related Length = 288 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 147/286 (51%), Positives = 212/286 (74%) Query: 1 MSDVIKLQGLSKSYDRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEI 60 MS +++L+ + K Y FEL+DIS +++GYI G IGPNGAGK++ IK++M ++ DQGEI Sbjct: 1 MSALLELKNVGKKYKEFELKDISFQLEKGYIMGFIGPNGAGKSTTIKLMMNLLKKDQGEI 60 Query: 61 QLFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFK 120 ++FG ++ + ++ K RIG+V DEN +YE L++ +MK++I PFY WDE + +Y E F Sbjct: 61 KIFGMDYREKESEIKQRIGFVYDENYFYEELSMIEMKKIIAPFYNNWDEKAFQRYVEDFN 120 Query: 121 LPPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEK 180 L P +KIK+LSKGMK+K+S+A+ALSH ADL+IMDEPTSGLDPI R ELL++L IQDE+ Sbjct: 121 LSPKQKIKELSKGMKMKYSLALALSHNADLIIMDEPTSGLDPIIRNELLDILYTIIQDEE 180 Query: 181 KSIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDVRRWFI 240 K I+FSTHNT+DLD+IADYI FIN G +VF+ ++ + E+Y ++KGGKE+L+ R + Sbjct: 181 KGILFSTHNTSDLDKIADYITFINNGEMVFSRPKDEILEQYKIIKGGKEILNASTREKLV 240 Query: 241 GLRESGVGFEGLIGNRVEGERYFKDTAICETPTLEEIMYFTVKGSE 286 G++E GVGFE L + + F + + E P LE+IM +TV+G + Sbjct: 241 GIKEHGVGFEALTRSSDVLRKEFGNRIVIEEPCLEDIMLYTVRGRQ 286 >Q62ZI2.1 Q62ZI2_BACLD ABC transporter,ATP/GTP-binding site motif A (P-loop) Length = 293 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 151/289 (52%), Positives = 205/289 (70%) Query: 1 MSDVIKLQGLSKSYDRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEI 60 M +VI+L+ + KS+D F+L+D S+ +K+G+ITG IG NG GK++ IK+IM ++ PD G I Sbjct: 1 MDNVIELRHVHKSFDGFQLKDFSMSVKKGFITGFIGGNGVGKSTTIKLIMNLLQPDSGTI 60 Query: 61 QLFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFK 120 +FG N+ +H+ K RIG+V D NI+YEHLT+ MK ++ Y WDE + Y F Sbjct: 61 TVFGMNYKEHEKEIKQRIGFVFDSNIFYEHLTLAKMKDIVKRSYVNWDEQVFNDYVNTFN 120 Query: 121 LPPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEK 180 LP KKIK SKGM +K S+ VALSH A+L+IMDEPTSGLDPIFRRELLE+L + +QD Sbjct: 121 LPLTKKIKTFSKGMIMKASLTVALSHHAELIIMDEPTSGLDPIFRRELLEILHQLMQDGD 180 Query: 181 KSIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDVRRWFI 240 K+I FSTH T DLD+IADYI FI++G +F + + E+Y +VKGG ELLDR+ + FI Sbjct: 181 KTIFFSTHITTDLDKIADYITFIDKGEHIFTKDFYEIEEQYAIVKGGMELLDRETEQEFI 240 Query: 241 GLRESGVGFEGLIGNRVEGERYFKDTAICETPTLEEIMYFTVKGSEAHV 289 +R+S GFE L N+ E+ F D A+ E PTLE+IM++T KG++ HV Sbjct: 241 AVRKSTHGFEALTANKSRTEKIFGDMALIEKPTLEDIMFYTKKGAKEHV 289 >Q65P43.1 Q65P43_BACLD Putative uncharacterized protein Length = 294 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 151/289 (52%), Positives = 205/289 (70%) Query: 1 MSDVIKLQGLSKSYDRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEI 60 M +VI+L+ + KS+D F+L+D S+ +K+G+ITG IG NG GK++ IK+IM ++ PD G I Sbjct: 2 MDNVIELRHVHKSFDGFQLKDFSMSVKKGFITGFIGGNGVGKSTTIKLIMNLLQPDSGTI 61 Query: 61 QLFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFK 120 +FG N+ +H+ K RIG+V D NI+YEHLT+ MK ++ Y WDE + Y F Sbjct: 62 TVFGMNYKEHEKEIKQRIGFVFDSNIFYEHLTLAKMKDIVKRSYVNWDEQVFNDYVNTFN 121 Query: 121 LPPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEK 180 LP KKIK SKGM +K S+ VALSH A+L+IMDEPTSGLDPIFRRELLE+L + +QD Sbjct: 122 LPLTKKIKTFSKGMIMKASLTVALSHHAELIIMDEPTSGLDPIFRRELLEILHQLMQDGD 181 Query: 181 KSIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDVRRWFI 240 K+I FSTH T DLD+IADYI FI++G +F + + E+Y +VKGG ELLDR+ + FI Sbjct: 182 KTIFFSTHITTDLDKIADYITFIDKGEHIFTKDFYEIEEQYAIVKGGMELLDRETEQEFI 241 Query: 241 GLRESGVGFEGLIGNRVEGERYFKDTAICETPTLEEIMYFTVKGSEAHV 289 +R+S GFE L N+ E+ F D A+ E PTLE+IM++T KG++ HV Sbjct: 242 AVRKSTHGFEALTANKSRTEKIFGDMALIEKPTLEDIMFYTKKGAKEHV 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,774,843,268 Number of extensions: 76807308 Number of successful extensions: 502786 Number of sequences better than 1.0e-05: 60869 Number of HSP's gapped: 454109 Number of HSP's successfully gapped: 63515 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)