BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0472.0014.p
         (212 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIR1.1 B3KIR1_9BACI Putative uncharacterized protein                 60   2e-07

>B3KIR1.1 B3KIR1_9BACI Putative uncharacterized protein
          Length = 197

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 21/215 (9%)

Query: 1   MSSSFYLIRKDFILTRKYXXXXXXFYMAIGYSN---LDSYVVSALFPSMLMLMNACSLDV 57
           MS    LI KD+++ RKY      +     + N   +  Y+V+ +   M+++++   L  
Sbjct: 1   MSHIVPLIHKDWMVIRKYAWLFAIWLALFSFGNAVGILGYMVAGM---MIIVISNTDL-- 55

Query: 58  QHNNQRFLVSLPLPRHQLVLAKYLSLLPYAAISLICTVLIYLAGVATGRAIEPIAWRNXX 117
            H   ++ +SLP+ R  +VL+KY+S L +  I L+   LI +A +  G   E        
Sbjct: 56  -HPFHKYSMSLPIRRRDIVLSKYVSSLLFMLIGLLAGFLIQVAYIWLGGDGEGAVLYQNI 114

Query: 118 XXXXXXXXXXXFYLPLYFWLGQKGIQIVNMIFMLLVMVGFTALSSVTLKLPGLLGWINTE 177
                       Y PLY+WLG KG Q + ++ +         L ++T+ +  L  W +  
Sbjct: 115 VSGISLILFIAVYYPLYYWLGPKGGQTLKLVLV-------AVLFAITMAINTL--WSDGL 165

Query: 178 NTDNFVLWAIGGVAYLFLLYCSYLISLRIFVKKDI 212
            TD   LW   G++ L +++ SY +S  IF + D+
Sbjct: 166 QTDY--LWYGLGISCL-VVFASYQLSAYIFSRTDV 197


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.144    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,054,628,812
Number of extensions: 36124093
Number of successful extensions: 115752
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 115800
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 82
Effective length of database: 1,835,964,253
Effective search space: 150549068746
Effective search space used: 150549068746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)