BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0472.0010.p
         (139 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q97G83.1 Q97G83_CLOAB Transcriptional regulator, MarR/EmrR family     169   1e-40
B9DWP9.1 B9DWP9_CLOK1 Putative uncharacterized protein                167   2e-40
A5N2Z9.1 A5N2Z9_CLOK5 Transcriptional regulator                       167   3e-40
A6LZH7.1 A6LZH7_CLOB8 Transcriptional regulator, MarR family          164   3e-39
Q0TS62.1 Q0TS62_CLOP1 Transcriptional regulator, MarR family          145   9e-34

>Q97G83.1 Q97G83_CLOAB Transcriptional regulator, MarR/EmrR family
          Length = 145

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 104/137 (75%)

Query: 3   NTPFSDLIREIGLXXXXXXXXRLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKE 62
           +TP+S LIR IG+        RLAELGLN+QQG+MIGYI E+++ G+IQKDLA+ F R+ 
Sbjct: 9   DTPYSYLIRSIGMKLKTSADARLAELGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRG 68

Query: 63  ASITSMLQGLEKKGYIKRVIPKENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTA 122
           ASITSMLQGLEKKGYI+R IP+ N RQK IY+L K   LVEEFN IF EVE+SIT  LT 
Sbjct: 69  ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESITKGLTK 128

Query: 123 EEAETLMKLLHKVNSNL 139
           +E + LM +L KVN ++
Sbjct: 129 DEQKQLMSILIKVNRSM 145


>B9DWP9.1 B9DWP9_CLOK1 Putative uncharacterized protein
          Length = 147

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 104/136 (76%)

Query: 4   TPFSDLIREIGLXXXXXXXXRLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKEA 63
           +P+SDLIR I L         + +LGLN+QQG+MI YI EH+D+G+IQKDLA+ F R+ A
Sbjct: 12  SPYSDLIRRIALKIKFKSDENINKLGLNSQQGRMISYIYEHQDEGIIQKDLADVFQRRGA 71

Query: 64  SITSMLQGLEKKGYIKRVIPKENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTAE 123
           SITSMLQGLE+KGYI+R IPK++ERQK IY+L K   L+EEFN IF +VEKSIT++LT  
Sbjct: 72  SITSMLQGLERKGYIQRSIPKDDERQKNIYVLQKGAELIEEFNRIFFQVEKSITENLTDG 131

Query: 124 EAETLMKLLHKVNSNL 139
           E E L+ LL KVN NL
Sbjct: 132 EKECLLSLLIKVNKNL 147


>A5N2Z9.1 A5N2Z9_CLOK5 Transcriptional regulator
          Length = 145

 Score =  167 bits (423), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 104/136 (76%)

Query: 4   TPFSDLIREIGLXXXXXXXXRLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKEA 63
           +P+SDLIR I L         + +LGLN+QQG+MI YI EH+D+G+IQKDLA+ F R+ A
Sbjct: 10  SPYSDLIRRIALKIKFKSDENINKLGLNSQQGRMISYIYEHQDEGIIQKDLADVFQRRGA 69

Query: 64  SITSMLQGLEKKGYIKRVIPKENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTAE 123
           SITSMLQGLE+KGYI+R IPK++ERQK IY+L K   L+EEFN IF +VEKSIT++LT  
Sbjct: 70  SITSMLQGLERKGYIQRSIPKDDERQKNIYVLQKGAELIEEFNRIFFQVEKSITENLTDG 129

Query: 124 EAETLMKLLHKVNSNL 139
           E E L+ LL KVN NL
Sbjct: 130 EKECLLSLLIKVNKNL 145


>A6LZH7.1 A6LZH7_CLOB8 Transcriptional regulator, MarR family
          Length = 145

 Score =  164 bits (415), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 104/136 (76%)

Query: 4   TPFSDLIREIGLXXXXXXXXRLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKEA 63
           TP+S LIR I +        ++ +LGLN+QQG+MIGYI EH+D G+IQKDLA+ F R EA
Sbjct: 10  TPYSQLIRSIAIKMKLSSDEKVKKLGLNSQQGRMIGYIYEHQDSGIIQKDLAKVFQRTEA 69

Query: 64  SITSMLQGLEKKGYIKRVIPKENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTAE 123
           SITSMLQGLEKKGYI+R IPKENERQK IY+L K   L+E+FN++ AE E++I  +LT +
Sbjct: 70  SITSMLQGLEKKGYIERRIPKENERQKYIYVLPKGAELIEDFNKLVAEAEENIIANLTEQ 129

Query: 124 EAETLMKLLHKVNSNL 139
           E ETL+ LL KV+ NL
Sbjct: 130 EKETLLALLLKVDRNL 145


>Q0TS62.1 Q0TS62_CLOP1 Transcriptional regulator, MarR family
          Length = 141

 Score =  145 bits (367), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 96/137 (70%)

Query: 3   NTPFSDLIREIGLXXXXXXXXRLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKE 62
           NT +++L+  I          ++  LGLN+QQG++I YI EH+D+GLIQKDLA  F R  
Sbjct: 4   NTIYTNLVSTIARKLKFSADKKINNLGLNSQQGRVIQYIYEHQDEGLIQKDLANVFGRTT 63

Query: 63  ASITSMLQGLEKKGYIKRVIPKENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTA 122
           ASITSML+GLEK GYI+R IP  NERQK IY+  K   L+E FN+ F E+E+ +T SLT 
Sbjct: 64  ASITSMLKGLEKNGYIRREIPSNNERQKNIYVEKKGIDLIETFNKNFLEIEEDLTSSLTE 123

Query: 123 EEAETLMKLLHKVNSNL 139
           EE ET +K+L K+N+NL
Sbjct: 124 EEKETFLKILTKINTNL 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 675,142,725
Number of extensions: 23550677
Number of successful extensions: 88823
Number of sequences better than 1.0e-05: 350
Number of HSP's gapped: 89095
Number of HSP's successfully gapped: 350
Length of query: 139
Length of database: 3,060,696,203
Length adjustment: 103
Effective length of query: 36
Effective length of database: 2,090,331,658
Effective search space: 75251939688
Effective search space used: 75251939688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)