BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0007.p (329 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q87WK8.1 Q87WK8_PSESM Peptide ABC transporter, permease protein 218 8e-55 Q0EE64.1 Q0EE64_PSESF Permease of Peptide ABC transporter 218 9e-55 Q4ZNM7.1 Q4ZNM7_PSEU2 Binding-protein-dependent transport system... 216 2e-54 C4CKS9.1 C4CKS9_9CHLR ABC-type dipeptide/oligopeptide/nickel tra... 215 6e-54 Q48E35.1 Q48E35_PSE14 Peptide ABC transporter, permease protein 213 3e-53 >Q87WK8.1 Q87WK8_PSESM Peptide ABC transporter, permease protein Length = 315 Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 164/303 (54%), Gaps = 1/303 (0%) Query: 26 IRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFM 85 ++ L V+ + F ++R +PGDPA+++LG STP+AL ++ GLD P+W Q+L FM Sbjct: 14 LQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPDALANIRAQYGLDQPMWTQYLYFM 73 Query: 86 NTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLL 145 LF QGD G S++ +LI R +K Sbjct: 74 KNLF-QGDMGKSLLYKIDVLKLIGTRLEPTLFLVIGSVLLALLIAVPLATVAARNKGSWG 132 Query: 146 DHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFS 205 D+LIR+F LGMP FW+G++LILLFSVRL WFPV G G W LH + LP +T+A + Sbjct: 133 DNLIRVFTTTGLGMPAFWLGIMLILLFSVRLDWFPVSGYGSDWLDKLHHMVLPCLTIALA 192 Query: 206 QIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLI 265 LVR+LRA ML L++D V RA + + +HVL NS +P++ LL VNI +LI Sbjct: 193 LSAVLVRNLRASMLMELQADHVTAARARGVSEGALFRRHVLPNSLVPSINLLAVNIGWLI 252 Query: 266 GGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRT 325 GT+V+E ++ I GIG LL I RD+ V+QG+A+ A DPR Sbjct: 253 SGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312 Query: 326 KGK 328 K Sbjct: 313 NIK 315 >Q0EE64.1 Q0EE64_PSESF Permease of Peptide ABC transporter Length = 315 Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 164/303 (54%), Gaps = 1/303 (0%) Query: 26 IRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFM 85 ++ L V+ + F ++R +PGDPA+++LG STP+AL ++ GLD P+W Q+L FM Sbjct: 14 LQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPDALANIRAQYGLDQPMWTQYLYFM 73 Query: 86 NTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLL 145 LF QGD G S++ +LI R +K Sbjct: 74 KNLF-QGDMGKSLLYKIDVLKLIGTRLEPTLFLVIGSVLLALLIAVPLATVAARNKGSWG 132 Query: 146 DHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFS 205 D+LIR+F LGMP FW+G++LILLFSVRL WFPV G G W LH + LP +T+A + Sbjct: 133 DNLIRVFTTTGLGMPAFWLGIMLILLFSVRLDWFPVSGYGSDWLDKLHHMVLPCLTIALA 192 Query: 206 QIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLI 265 LVR+LRA ML L++D V RA + + +HVL NS +P++ LL VNI +LI Sbjct: 193 LSAVLVRNLRASMLMELQADHVTAARARGVSEGALFRRHVLPNSLVPSINLLAVNIGWLI 252 Query: 266 GGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRT 325 GT+V+E ++ I GIG LL I RD+ V+QG+A+ A DPR Sbjct: 253 SGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312 Query: 326 KGK 328 K Sbjct: 313 SIK 315 >Q4ZNM7.1 Q4ZNM7_PSEU2 Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 164/303 (54%), Gaps = 1/303 (0%) Query: 26 IRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFM 85 ++ L V+ + F ++R +PGDPA+M+LG STP+AL ++ GLD PLW Q++ FM Sbjct: 14 LQLLPVLFGISLVTFILVRSIPGDPARMLLGSRSTPQALANIRAQYGLDEPLWTQYVYFM 73 Query: 86 NTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLL 145 L QGD G S++ +LI+ R +K Sbjct: 74 KNL-VQGDMGKSLLYKIDVLKLISTRIEPTVFLVSGSVLLALLIAVPLATLAARNKGSWS 132 Query: 146 DHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFS 205 D+LIR+F LGMP FW+G++LILLFSV+LGWFPV G G W H L LP +T+A + Sbjct: 133 DNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFPVSGYGSDWLDKAHHLVLPCLTIALA 192 Query: 206 QIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLI 265 L+R+LRA ML L++D V RA + + +HVL NS +P++ LL VNI +LI Sbjct: 193 LSAVLIRNLRASMLVELQADHVTAARARGLSEGALFRRHVLPNSLVPSINLLAVNIGWLI 252 Query: 266 GGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRT 325 GT+V+E ++ I GIG LL I RD+ V+QG+A+ A DPR Sbjct: 253 SGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312 Query: 326 KGK 328 K Sbjct: 313 NIK 315 >C4CKS9.1 C4CKS9_9CHLR ABC-type dipeptide/oligopeptide/nickel transport system, permease component Length = 311 Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 173/308 (56%), Gaps = 1/308 (0%) Query: 19 KWLVIALIRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLW 78 ++++ LI+ + V+ + +FF+I +VPGDPA ++LG +TPE + + LGLD PL Sbjct: 3 RFVLRRLIQMVPVVFGLTAVIFFMIHLVPGDPAAIMLGTRATPENVAQLRRNLGLDEPLL 62 Query: 79 DQFLRFMNTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXX 138 Q++ F+ L T G G+SI +LI P Sbjct: 63 VQYMFFLRNLAT-GSLGDSIFYREPVLDLILDHLPTTLMLATSTIMLAVIITVPLATLAA 121 Query: 139 XHKDKLLDHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALP 198 H+D+L D ++R F + L MP FWVG+ L+LL +VR FP GG G+G+ L L LP Sbjct: 122 LHRDRLADQVVRGFLLVGLAMPSFWVGINLLLLLTVRYRIFPAGGFGDGFFDHLRHLFLP 181 Query: 199 AVTVAFSQIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLG 258 A+T+A S LVR+LR+ +++ L +D V T RA + +R + F HVLRNSA+ T+ +LG Sbjct: 182 ALTIALSISAVLVRNLRSSLIDTLTADHVRTARAKGLSSRAVFFWHVLRNSAMSTVTILG 241 Query: 259 VNISYLIGGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXX 318 +N+ YL+GGT+++EQV+ + G+G LL TSI RD+PV+QGI L A Sbjct: 242 LNLGYLMGGTVIIEQVFALPGLGQLLLTSIFGRDYPVVQGITLVYAVLVILVNLITDLVY 301 Query: 319 XXXDPRTK 326 DPR Sbjct: 302 AALDPRVS 309 >Q48E35.1 Q48E35_PSE14 Peptide ABC transporter, permease protein Length = 315 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 163/303 (53%), Gaps = 1/303 (0%) Query: 26 IRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFM 85 ++ L V+ + F ++R +PGDPA+++LG STP+AL ++ GLD PLW Q++ FM Sbjct: 14 LQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPQALANIRAQYGLDEPLWTQYVYFM 73 Query: 86 NTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLL 145 L QGD G S++ +LI R + Sbjct: 74 KNLL-QGDMGKSLLYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNNGSWG 132 Query: 146 DHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFS 205 D+LIR+F LGMP FW+G++LILLFSV+LGWFPV G G W +H + LP +T+A + Sbjct: 133 DNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFPVSGYGSDWLDKVHHMVLPCLTIALA 192 Query: 206 QIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLI 265 L+R+LRA ML L++D V RA + + +HVL NS +P++ LL VNI +LI Sbjct: 193 LSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVNIGWLI 252 Query: 266 GGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRT 325 GT+V+E ++ I GIG LL I RD+ V+QG+A+ A DPR Sbjct: 253 SGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312 Query: 326 KGK 328 K Sbjct: 313 NIK 315 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,592,168,798 Number of extensions: 58294364 Number of successful extensions: 224639 Number of sequences better than 1.0e-05: 5793 Number of HSP's gapped: 214491 Number of HSP's successfully gapped: 5933 Length of query: 329 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 193 Effective length of database: 1,779,438,163 Effective search space: 343431565459 Effective search space used: 343431565459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)