BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0006.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9LCD1.1 Q9LCD1_OCHAN Dipeptide transporter DppC homolog 220 1e-55 C1D4A9.1 C1D4A9_DEIDV Putative dipeptide/oligopeptide/nickel ABC... 216 2e-54 Q1GD18.1 Q1GD18_SILST Binding-protein-dependent transport system... 215 4e-54 A0NMG9.1 A0NMG9_9RHOB Binding-protein-dependent transport system... 213 1e-53 B7QPV8.1 B7QPV8_9RHOB Binding-protein-dependent transport system... 210 1e-52 >Q9LCD1.1 Q9LCD1_OCHAN Dipeptide transporter DppC homolog Length = 291 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 104/261 (39%), Positives = 167/261 (63%), Gaps = 1/261 (0%) Query: 13 RIWNTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGRDL 72 R W +P L +G+ + +L ++A+F P+++PY P Q+ A L PPS H GTD LGRD+ Sbjct: 21 RSW-SPPLKIGSAIMALLGLVAIFAPFIAPYDPNYQDFEAILVPPSLKHLFGTDNLGRDV 79 Query: 73 FTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLIV 132 F+R+++ AR DL + L +P G+ +G AGY G DA + + D +AFPF +++ Sbjct: 80 FSRVVFGARIDLVVGFLLTYVPMIYGVLIGAYAGYIGGRFDATLMRIIDVAMAFPFLVLI 139 Query: 133 IIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILRH 192 +++ G G + IYI +V W ++AR+ R R ++++ +A+ LG P RII H Sbjct: 140 VVILAILGPGIQNIYIAIFIVAWTMYARLARAEMMVERTKDYMVAAKVLGFPRSRIIFLH 199 Query: 193 LLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLSA 252 LPNV+ ++V +D + +V + L ++G+GI PP P+WG+MI++G+ F+ AWW++ Sbjct: 200 GLPNVINSSIVFSTSDFVLNIVLVSGLSFIGLGIQPPAPEWGSMIAEGRDFMRQAWWIAV 259 Query: 253 VPGFAVVYTGIALSLVGDGLA 273 +PGFA+V TG+AL L+GDGLA Sbjct: 260 LPGFAIVLTGMALVLIGDGLA 280 >C1D4A9.1 C1D4A9_DEIDV Putative dipeptide/oligopeptide/nickel ABC transporter, permease component Length = 285 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 164/251 (65%), Gaps = 3/251 (1%) Query: 31 IILAVFIPYL-SPYSPTEQNLSAFLQPPSAAHWLGTDQLGRDLFTRLIYAARTDLKIMVL 89 I+ A F P L +PYSPTE + SA L+PPSA+H GTD GRD+F+R++Y R D++I +L Sbjct: 35 ILAATFAPGLIAPYSPTEFDYSAILKPPSASHLFGTDNFGRDVFSRVVYGTRIDMQIALL 94 Query: 90 AEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLIVIIVAFASGAGERGIYIT 149 + PF G LG G+ G+W D + + D ++ FPF ++VI + G G +YI Sbjct: 95 TTLFPFVFGSLLGAFTGFIGRWPDMLVGRIADLVVVFPFLVLVIAIVAVLGPGLTNMYIA 154 Query: 150 FMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILRHLLPNVLPQAVVVLMTDM 209 VGW+ + R+VRG + ++ E+ +A+ LG R++LRH+LPN + A+V LMTDM Sbjct: 155 VSAVGWVAYWRLVRGEVLAQKEAEYAQAARVLGFSPSRVLLRHILPNAVTPAIVYLMTDM 214 Query: 210 -IGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLSAVPGFAVVYTGIALSLV 268 +G+L+ +LGYLG+G PPTP+WG M++DG+ F+ TAWW+S PG A+ G+ SL+ Sbjct: 215 SLGILLG-ASLGYLGLGAQPPTPEWGVMVADGKNFMVTAWWISGFPGLALTLAGVTFSLI 273 Query: 269 GDGLADIWRKK 279 GDGLAD R + Sbjct: 274 GDGLADALRPR 284 >Q1GD18.1 Q1GD18_SILST Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 164/273 (60%), Gaps = 1/273 (0%) Query: 8 AYRLKR-IWNTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTD 66 +YR+ R + P +VG ++ LVLI+ A+F P+++P+SP QNL L PPSA HW+GTD Sbjct: 24 SYRVTRMLMRNPLAVVGAVILLVLILAAIFAPWIAPHSPLGQNLGQRLLPPSAEHWMGTD 83 Query: 67 QLGRDLFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAF 126 +LGRD+F+R+IY AR L I+ L +I G+ +G ++GY+G W D I +TD ++ Sbjct: 84 ELGRDIFSRVIYGARITLLIVALVAVISAPLGLLIGAVSGYFGGWTDKIIMGVTDVFLSM 143 Query: 127 PFYLIVIIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGV 186 P ++ + A G G I + W +AR+ R + +FR E++++ + LG Sbjct: 144 PKLILALAFVAALGPGIENAIIAIAITSWPAYARIARAETLTFRNSEFISAMRLLGASHT 203 Query: 187 RIILRHLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITT 246 RII RH+LP +V + DM G+++ LG+LG+G PP P+WG MIS G+ FI Sbjct: 204 RIITRHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMISRGRAFILD 263 Query: 247 AWWLSAVPGFAVVYTGIALSLVGDGLADIWRKK 279 WW++ +PGFA++ + +GDGL D+ K Sbjct: 264 QWWVATMPGFAIIIVSLGFCFLGDGLRDVLDPK 296 >A0NMG9.1 A0NMG9_9RHOB Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 105/282 (37%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 5 SRMAYRLKRIWN-------TPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPP 57 SR+ L R W P +VG + LVLI++A+F P L+PYSP Q+L+ L PP Sbjct: 12 SRLQAYLGRAWRVFAALLRNPLAVVGGFIILVLIVMAIFAPLLAPYSPIGQDLANRLMPP 71 Query: 58 SAAHWLGTDQLGRDLFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAIS 117 SAAHW+GTD+LGRD+++R++Y AR L I+ + +I G+ +G ++GY+G W D + Sbjct: 72 SAAHWMGTDELGRDIYSRVVYGARITLMIVTMVAVIAAPIGLIVGAISGYFGGWTDRVLM 131 Query: 118 LLTDTLIAFPFYLIVIIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVAS 177 +TD ++ P ++ + A G G I + W +AR+ R + +FR E++A+ Sbjct: 132 GVTDIFLSMPKLILALAFVAALGPGIENAIIAIAITAWPAYARIARAETITFRDAEFIAA 191 Query: 178 AQTLGLPGVRIILRHLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMI 237 + G R+ILRH+LP ++ + DM G+++ LG+LG+G PP P+WG MI Sbjct: 192 VRLQGASSARVILRHVLPLCASSTIIRVTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMI 251 Query: 238 SDGQPFITTAWWLSAVPGFAVVYTGIALSLVGDGLADIWRKK 279 S G+ FI WW++ +PGFA++ + +GDGL D+ K Sbjct: 252 SRGRNFILDQWWVATMPGFAIILVSLGFCFLGDGLRDVLDPK 293 >B7QPV8.1 B7QPV8_9RHOB Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/279 (37%), Positives = 163/279 (58%), Gaps = 3/279 (1%) Query: 1 LHKGSRMAYRLKRIWNTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAA 60 L +G RM L R P ++G ++ L LI AVF P+++P+SP QNLS L PPS+ Sbjct: 21 LGRGYRMIRLLMR---NPLAVIGAVILLTLIFAAVFAPWIAPHSPLGQNLSQRLLPPSST 77 Query: 61 HWLGTDQLGRDLFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLT 120 HW+GTD+LGRD+F+R+IY AR L I+ L +I G+ +G ++GY+G W D + +T Sbjct: 78 HWMGTDELGRDIFSRVIYGARITLMIVALVAVIAAPLGLLIGAVSGYFGGWTDKVLMGVT 137 Query: 121 DTLIAFPFYLIVIIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQT 180 D ++ P ++ + A G G I + W +AR+ R + +FR E++++ + Sbjct: 138 DVFLSMPKLILALAFVAALGPGIENAIIAIAITSWPAYARIARAETLTFRNAEFISAMRL 197 Query: 181 LGLPGVRIILRHLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDG 240 LG RII H+LP +V + DM G+++ LG+LG+G PP P+WG MIS G Sbjct: 198 LGASHARIITGHVLPLCTSSMIVRVTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMISRG 257 Query: 241 QPFITTAWWLSAVPGFAVVYTGIALSLVGDGLADIWRKK 279 + FI WW++ +PGFA++ + +GDGL D+ K Sbjct: 258 RAFILDQWWVATMPGFAIIVVSLGFCFLGDGLRDVLDPK 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,705,213,869 Number of extensions: 70880581 Number of successful extensions: 290187 Number of sequences better than 1.0e-05: 6135 Number of HSP's gapped: 283386 Number of HSP's successfully gapped: 6184 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)