BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0005.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A2PBP2.1 A2PBP2_VIBCH Dipeptide transport ATP-binding protein DppD 183 1e-44 A6AI77.1 A6AI77_VIBCH Dipeptide transport ATP-binding protein DppD 183 1e-44 A3PFY3.1 A3PFY3_RHOS1 ABC transporter related 183 2e-44 Q3J6G4.1 Q3J6G4_RHOS4 ABC oligopeptide transporter, fused ATPase... 183 2e-44 B9KRB5.1 B9KRB5_RHOSK ABC transporter related 183 2e-44 >A2PBP2.1 A2PBP2_VIBCH Dipeptide transport ATP-binding protein DppD Length = 288 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 149/256 (58%), Gaps = 20/256 (7%) Query: 7 VLEIEALSLAAKSNEPLVHNVSFXXXXXXXXXXXXXXXXXXXXTLRAILGLLPRGVTQ-T 65 V ++E L ++H VSF T +I+GLLP+ + T Sbjct: 9 VKQLETEFLTDNGAVKILHGVSFDVKKGRTLGLVGESGCGKSVTAMSIMGLLPKPYGRVT 68 Query: 66 GGVI-----------KSEVSS------AMVFQDPRGALDPLCPVVKQLAEVV-YYRQQVS 107 GG I E+ + +++FQDP AL+P+ V KQL EV+ +R ++ Sbjct: 69 GGEILYRGKDLVKLPPKEMYAMRGDRISIIFQDPMTALNPVHTVGKQLMEVLALHRPELG 128 Query: 108 RKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALACKPGILLCDEPTTA 167 R R+ ALE+LE++ +P A KR D YP LSGG QR++IAMALACKP IL+CDEPTTA Sbjct: 129 RSTLRQYALEMLEKVRIPMADKRLDEYPHNLSGGMRQRVMIAMALACKPEILICDEPTTA 188 Query: 168 LDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQ 227 LDVTVQ I++ I LQQE G A++F+TH+L + A +C + VM AG++VEH D DL Sbjct: 189 LDVTVQASILDLIQDLQQETGMAVIFITHDLGVVAEVCDEVVVMYAGKVVEHADVFDLFD 248 Query: 228 HPSDPYTQMLIDSVLP 243 P PYT+ L+ S++P Sbjct: 249 RPQHPYTERLM-SLMP 263 >A6AI77.1 A6AI77_VIBCH Dipeptide transport ATP-binding protein DppD Length = 288 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 149/256 (58%), Gaps = 20/256 (7%) Query: 7 VLEIEALSLAAKSNEPLVHNVSFXXXXXXXXXXXXXXXXXXXXTLRAILGLLPRGVTQ-T 65 V ++E L ++H VSF T +I+GLLP+ + T Sbjct: 9 VKQLETEFLTDNGAVKILHGVSFDVKKGRTLGLVGESGCGKSVTAMSIMGLLPKPYGRVT 68 Query: 66 GGVI-----------KSEVSS------AMVFQDPRGALDPLCPVVKQLAEVV-YYRQQVS 107 GG I E+ + +++FQDP AL+P+ V KQL EV+ +R ++ Sbjct: 69 GGEILYRGKDLVKLPPKEMYAMRGDRISIIFQDPMTALNPVHTVGKQLMEVLALHRPELG 128 Query: 108 RKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALACKPGILLCDEPTTA 167 R R+ ALE+LE++ +P A KR D YP LSGG QR++IAMALACKP IL+CDEPTTA Sbjct: 129 RSTLRQYALEMLEKVRIPMADKRLDEYPHNLSGGMRQRVMIAMALACKPEILICDEPTTA 188 Query: 168 LDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQ 227 LDVTVQ I++ I LQQE G A++F+TH+L + A +C + VM AG++VEH D DL Sbjct: 189 LDVTVQASILDLIQDLQQETGMAVIFITHDLGVVAEVCDEVVVMYAGKVVEHADVFDLFD 248 Query: 228 HPSDPYTQMLIDSVLP 243 P PYT+ L+ S++P Sbjct: 249 RPQHPYTERLM-SLMP 263 >A3PFY3.1 A3PFY3_RHOS1 ABC transporter related Length = 539 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 151/255 (59%), Gaps = 19/255 (7%) Query: 5 QPVLEIEALSLAAKSNE---PLVHNVSFXXXXXXXXXXXXXXXXXXXXTLRAILGLLPRG 61 +PVL+++ L +A ++N+ V + T A++GLL + Sbjct: 2 EPVLDVKGLRVAFQTNDGEVQAVRGIDLSVMPGETVAIVGESGSGKSQTTMALMGLLAQN 61 Query: 62 VTQTG----------GVIKSEVSS------AMVFQDPRGALDPLCPVVKQLAEVVYYRQQ 105 TG G+ + E++ M+FQ+P +LDPL + QLAE + + + Sbjct: 62 GRATGSALYRGRELIGLSERELNKVRGDKITMIFQEPMTSLDPLYRIGDQLAEPLRFHRG 121 Query: 106 VSRKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALACKPGILLCDEPT 165 +S++ +R +ELL +G+PE +R D YP +LSGGQ QR++IAMALAC P IL+ DEPT Sbjct: 122 LSKREARPRIVELLRLVGIPEPERRIDSYPHELSGGQRQRVMIAMALACDPDILIADEPT 181 Query: 166 TALDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKAGEIVEHGDTIDL 225 TALDVT+Q QI+ + LQ+ LG A++F+TH+L I R+YVM+AGE+VE G+T L Sbjct: 182 TALDVTIQAQILTLLADLQKRLGMAILFITHDLGIVQRFADRVYVMQAGEVVETGETAAL 241 Query: 226 LQHPSDPYTQMLIDS 240 + PS PYT+ML+D+ Sbjct: 242 FEAPSHPYTRMLLDA 256 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 77 MVFQDPRGALDPLCPVVKQLAE-VVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYP 135 +VFQDP G+L P V + + E + + +S + R A E L +GL A++ +RYP Sbjct: 361 LVFQDPFGSLSPRMTVGRIITEGLKIHEPDLSTRERDRRAGEALAEVGLSPAMR--NRYP 418 Query: 136 SQLSGGQCQRIVIAMALACKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVT 195 + SGGQ QRI IA ++ KP +++ DEPT+ALD +VQ+QI++ + LQ G + +F++ Sbjct: 419 HEFSGGQRQRIAIARSMILKPRVIVLDEPTSALDRSVQKQIVDLLRDLQARHGLSYLFIS 478 Query: 196 HNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQHPSDPYTQMLIDSVL 242 H+LA+ L + VMK G IVE G T D+ P + YT+ L+ + L Sbjct: 479 HDLAVVRALADYILVMKEGRIVEEGQTADIFDRPQEAYTRTLMAAAL 525 >Q3J6G4.1 Q3J6G4_RHOS4 ABC oligopeptide transporter, fused ATPase subunits Length = 539 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 151/255 (59%), Gaps = 19/255 (7%) Query: 5 QPVLEIEALSLAAKSNE---PLVHNVSFXXXXXXXXXXXXXXXXXXXXTLRAILGLLPRG 61 +PVL+++ L +A ++N+ V + T A++GLL + Sbjct: 2 EPVLDVKGLRVAFQTNDGEVQAVRGIDLSVMPGETVAIVGESGSGKSQTTMALMGLLAQN 61 Query: 62 VTQTG----------GVIKSEVSS------AMVFQDPRGALDPLCPVVKQLAEVVYYRQQ 105 TG G+ + E++ M+FQ+P +LDPL + QLAE + + + Sbjct: 62 GRATGSALYRGRELIGLSERELNKVRGDKITMIFQEPMTSLDPLYRIGDQLAEPLRFHRG 121 Query: 106 VSRKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALACKPGILLCDEPT 165 +S++ +R +ELL +G+PE +R D YP +LSGGQ QR++IAMALAC P IL+ DEPT Sbjct: 122 LSKREARPRIVELLRLVGIPEPERRIDSYPHELSGGQRQRVMIAMALACDPDILIADEPT 181 Query: 166 TALDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKAGEIVEHGDTIDL 225 TALDVT+Q QI+ + LQ+ LG A++F+TH+L I R+YVM+AGE+VE G+T L Sbjct: 182 TALDVTIQAQILTLLADLQKRLGMAILFITHDLGIVQRFADRVYVMQAGEVVETGETAAL 241 Query: 226 LQHPSDPYTQMLIDS 240 + PS PYT+ML+D+ Sbjct: 242 FEAPSHPYTRMLLDA 256 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 5/168 (2%) Query: 77 MVFQDPRGALDPLCPVVKQLAE--VVYYRQQVSRKASRRIALELLERLGLPEALKRSDRY 134 +VFQDP G+L P V + + E ++ +R+ RR L E +GL A++ +RY Sbjct: 361 LVFQDPFGSLSPRMTVGRIITEGLKIHEPDLSTRERDRRAGAALAE-VGLSPAMR--NRY 417 Query: 135 PSQLSGGQCQRIVIAMALACKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFV 194 P + SGGQ QRI IA ++ KP +++ DEPT+ALD +VQ+QI++ + LQ G + +F+ Sbjct: 418 PHEFSGGQRQRIAIARSMILKPRVIVLDEPTSALDRSVQKQIVDLLRDLQARHGLSYLFI 477 Query: 195 THNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQHPSDPYTQMLIDSVL 242 +H+LA+ L + VMK G IVE G T D+ P + YT+ L+ + L Sbjct: 478 SHDLAVVRALADYILVMKEGRIVEEGQTADIFDRPQEAYTRTLMAAAL 525 >B9KRB5.1 B9KRB5_RHOSK ABC transporter related Length = 539 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 151/255 (59%), Gaps = 19/255 (7%) Query: 5 QPVLEIEALSLAAKSNE---PLVHNVSFXXXXXXXXXXXXXXXXXXXXTLRAILGLLPRG 61 +PVL+++ L +A ++N+ V + T A++GLL + Sbjct: 2 EPVLDVKGLRVAFQTNDGEVQAVRGIDLSVMPGETVAIVGESGSGKSQTTMALMGLLAQN 61 Query: 62 VTQTG----------GVIKSEVSS------AMVFQDPRGALDPLCPVVKQLAEVVYYRQQ 105 TG G+ + E++ M+FQ+P +LDPL + QLAE + + + Sbjct: 62 GRATGSALYRGRELIGLSERELNKVRGDKITMIFQEPMTSLDPLYRIGDQLAEPLRFHRG 121 Query: 106 VSRKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALACKPGILLCDEPT 165 +S++ +R +ELL +G+PE +R D YP +LSGGQ QR++IAMALAC P IL+ DEPT Sbjct: 122 LSKREARPRIVELLRLVGIPEPERRIDSYPHELSGGQRQRVMIAMALACDPDILIADEPT 181 Query: 166 TALDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKAGEIVEHGDTIDL 225 TALDVT+Q QI+ + LQ+ LG A++F+TH+L I R+YVM+AGE+VE G+T L Sbjct: 182 TALDVTIQAQILTLLADLQKRLGMAILFITHDLGIVQRFADRVYVMQAGEVVETGETAAL 241 Query: 226 LQHPSDPYTQMLIDS 240 + PS PYT+ML+D+ Sbjct: 242 FEAPSHPYTRMLLDA 256 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 77 MVFQDPRGALDPLCPVVKQLAE-VVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYP 135 +VFQDP G+L P V + + E + + +S + R A E L +GL A++ +RYP Sbjct: 361 LVFQDPFGSLSPRMTVGRIITEGLKIHEPGLSTRERDRRAGEALAEVGLSPAMR--NRYP 418 Query: 136 SQLSGGQCQRIVIAMALACKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVT 195 + SGGQ QRI IA ++ KP +++ DEPT+ALD +VQ+QI++ + LQ G + +F++ Sbjct: 419 HEFSGGQRQRIAIARSMILKPRVIVLDEPTSALDRSVQKQIVDLLRDLQARHGLSYLFIS 478 Query: 196 HNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQHPSDPYTQMLIDSVL 242 H+LA+ L + VMK G IVE G T D+ P + YT+ L+ + L Sbjct: 479 HDLAVVRALADYILVMKEGRIVEEGQTADIFDRPQEAYTRTLMAAAL 525 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,253,751,135 Number of extensions: 42730720 Number of successful extensions: 246932 Number of sequences better than 1.0e-05: 58556 Number of HSP's gapped: 241634 Number of HSP's successfully gapped: 60901 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)