BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0022.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKS6.1 B3KKS6_9BACI Response regulator receiver 352 2e-95 B1DF46.1 B1DF46_9BACL Two component transcriptional regulator, L... 291 4e-77 C0Z628.1 C0Z628_BREBN Two-component response regulator 262 1e-68 Q63DU2.1 Q63DU2_BACCZ Response regulator 247 4e-64 Q81T32.1 Q81T32_BACAN DNA-binding response regulator 244 4e-63 >B3KKS6.1 B3KKS6_9BACI Response regulator receiver Length = 214 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 178/216 (82%), Positives = 189/216 (87%), Gaps = 2/216 (0%) Query: 3 MEEAIKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVM 62 ME IKVLLVDDHEMVRIGLAAVLGTED RLAQEY+PDVVLMDLVM Sbjct: 1 MEAPIKVLLVDDHEMVRIGLAAVLGTEDGIEVVGEAGSGEEGIRLAQEYHPDVVLMDLVM 60 Query: 63 DGMDGIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRA 122 DGMDGIETTR+L+K +P+ KVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRA Sbjct: 61 DGMDGIETTRELMKQFPNLKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRA 120 Query: 123 AARGQSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLI 182 AARGQSVLESQVASKMMNRFR +EAPA+ +LT+REMEVL+LLAQG+SNQDIAD LI Sbjct: 121 AARGQSVLESQVASKMMNRFRH--PQNEAPAHNDLTDREMEVLRLLAQGKSNQDIADDLI 178 Query: 183 IGIKTVKFHVTNILAKLGVEDRTQAAIYAYKNGLAE 218 IGIKTVKFHVTNIL KLGVEDRTQAAIYAYKNGLAE Sbjct: 179 IGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGLAE 214 >B1DF46.1 B1DF46_9BACL Two component transcriptional regulator, LuxR family Length = 230 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 152/217 (70%), Positives = 180/217 (82%) Query: 2 EMEEAIKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLV 61 ++ E IKVLLVDDHEMVRIGLAAVL TE+ RLAQ Y PD+VLMDLV Sbjct: 14 QLNERIKVLLVDDHEMVRIGLAAVLDTEEGIEVVGEASNGYDGIRLAQAYKPDIVLMDLV 73 Query: 62 MDGMDGIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIR 121 MDGMDG+ETT++LL+LYP+CKVIVLTS++DD K+YPVIEAGAFSYLLKT+RA+E+ADAIR Sbjct: 74 MDGMDGVETTQKLLELYPECKVIVLTSFIDDSKLYPVIEAGAFSYLLKTARATEIADAIR 133 Query: 122 AAARGQSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQL 181 AAARGQSVLESQVA+KMMNR R + +A + +LTEREM+VLK +AQG SNQ+IAD+L Sbjct: 134 AAARGQSVLESQVAAKMMNRLRKPKQPVQAALHDDLTEREMDVLKRVAQGMSNQEIADEL 193 Query: 182 IIGIKTVKFHVTNILAKLGVEDRTQAAIYAYKNGLAE 218 IG+KTVKFH+TNI KL VEDRTQAAIYA+K G+AE Sbjct: 194 FIGVKTVKFHITNIFNKLDVEDRTQAAIYAHKQGIAE 230 >C0Z628.1 C0Z628_BREBN Two-component response regulator Length = 209 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 132/211 (62%), Positives = 163/211 (77%), Gaps = 3/211 (1%) Query: 7 IKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGMD 66 I+VLLVDDHEMVR+GLAA L TE+ R+ QE PDVVLMDLVM+G+ Sbjct: 2 IRVLLVDDHEMVRMGLAAYLSTEEDIEVVAEAGSGEEGVRMTQELLPDVVLMDLVMEGIG 61 Query: 67 GIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAARG 126 G+E TR++ + P KVIVLTS++DDEK+YPVIEAGAFSYLLKTSRA+E+A AIR+AA G Sbjct: 62 GVEATRRIRESCPSSKVIVLTSFIDDEKVYPVIEAGAFSYLLKTSRAAEIAKAIRSAAAG 121 Query: 127 QSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGIK 186 + VLES+VA K+M RFR E+ +++LT RE+EVLKL+ QG+SNQ+IAD+LIIGIK Sbjct: 122 EPVLESRVAGKIMARFRHG---QESHPHEQLTPRELEVLKLIGQGKSNQEIADELIIGIK 178 Query: 187 TVKFHVTNILAKLGVEDRTQAAIYAYKNGLA 217 TVK HV+NILAKL VEDRTQAAIY + + L Sbjct: 179 TVKTHVSNILAKLNVEDRTQAAIYVHTHSLG 209 >Q63DU2.1 Q63DU2_BACCZ Response regulator Length = 210 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/212 (56%), Positives = 160/212 (75%), Gaps = 3/212 (1%) Query: 7 IKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGMD 66 IKVLLVDDHEMVR+G++A L T+ LA + PD++LMDLVMDGMD Sbjct: 2 IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAENGRKGSELALQLRPDIILMDLVMDGMD 61 Query: 67 GIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAARG 126 G+E TR +++ +P+ K++V+TS+LDDEK+YPVIEAGA SYLLKTSRAS++ADA+RA G Sbjct: 62 GVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYDG 121 Query: 127 QSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGIK 186 ++VLE +V KMM+R R + E P ++ELTERE E+L L+A+G+SNQ+IAD+L I +K Sbjct: 122 ETVLEPKVTGKMMSRMR---QKKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALK 178 Query: 187 TVKFHVTNILAKLGVEDRTQAAIYAYKNGLAE 218 TVK HV+NIL KL V DRTQA IYA+++ L + Sbjct: 179 TVKTHVSNILNKLNVSDRTQAVIYAFRHQLTK 210 >Q81T32.1 Q81T32_BACAN DNA-binding response regulator Length = 210 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/212 (56%), Positives = 159/212 (75%), Gaps = 3/212 (1%) Query: 7 IKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGMD 66 IKVLLVDDHEMVR+G++A L T+ LA + PD++LMDLVMD MD Sbjct: 2 IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAENGRKGSELALQLRPDIILMDLVMDEMD 61 Query: 67 GIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAARG 126 G+E TR +++ +P+ K++V+TS+LDDEK+YPVIEAGA SYLLKTSRAS++ADA+RA G Sbjct: 62 GVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYDG 121 Query: 127 QSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGIK 186 ++VLE +V KMM+R R + E P ++ELTERE E+L L+A+G+SNQ+IAD+L I +K Sbjct: 122 ETVLEPKVTGKMMSRMR---QKKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALK 178 Query: 187 TVKFHVTNILAKLGVEDRTQAAIYAYKNGLAE 218 TVK HV+NIL KL V DRTQA IYA+++ L + Sbjct: 179 TVKTHVSNILNKLNVSDRTQAVIYAFRHQLTK 210 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 964,020,642 Number of extensions: 30677606 Number of successful extensions: 167195 Number of sequences better than 1.0e-05: 8901 Number of HSP's gapped: 163565 Number of HSP's successfully gapped: 8913 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)