BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0471.0020.p
         (215 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKS8.1 B3KKS8_9BACI Membrane protein-like protein                   216   8e-55
Q65F43.1 Q65F43_BACLD YvqF                                             71   5e-11
B4AG95.1 B4AG95_BACPU Protein LiaF                                     65   3e-09
A8FHA2.1 A8FHA2_BACP2 Hypothetical membrane protein                    65   3e-09
C0Z626.1 C0Z626_BREBN Conserved hypothetical membrane protein          65   5e-09

>B3KKS8.1 B3KKS8_9BACI Membrane protein-like protein
          Length = 214

 Score =  216 bits (551), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 148/210 (70%)

Query: 4   RNRMIAIGLIGVGCLMIFGRWLGFFSIVALLFLLLGIYRTTSGKVKQGYKLLGVGAVXXX 63
           RNR IA+GLI +G +M+FGRW GFF+IVALL +  G+ +   G VK+GY LLGVGAV   
Sbjct: 3   RNRWIAVGLISLGFIMLFGRWFGFFTIVALLLIFAGVLQIRQGHVKKGYILLGVGAVLLL 62

Query: 64  XXXXXXXXXXXXXXXGMFFVKSRRMQRRGGFMQKQSFSSRFDWDLSPWVMRSLSAWHVLG 123
                          G+F+ KS+R      ++QKQ+F S FDWD +PWVMRSLS WHVLG
Sbjct: 63  LEHLMLIIGVSLISLGIFYGKSKRAHTTTRYIQKQNFMSNFDWDRAPWVMRSLSVWHVLG 122

Query: 124 EADIDLSLAMAEDPETVMLFQGIFGDTDIHLSEDYGVEIEAFVLFGSIEFGSHRDTGMLN 183
           EAD+DLSLA+ E+ +TV++F G+ GD D+ + + YGVEIEAF+LFGSI     ++TG+LN
Sbjct: 123 EADVDLSLALPEERQTVLMFHGMLGDIDLMIPDYYGVEIEAFILFGSIHMDDRKETGILN 182

Query: 184 RLNWKSANYDSCAQKVKFNISYLMGDLDVR 213
           R+ ++S NY++   KVKF +SYL GDL++R
Sbjct: 183 RVKYQSPNYETSEYKVKFIVSYLGGDLNIR 212


>Q65F43.1 Q65F43_BACLD YvqF
          Length = 243

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%)

Query: 86  RRMQRRGGFMQKQSFSSRFDWDLSPWVMRSLSAWHVLGEADIDLSLAMAEDPETVMLFQG 145
           + +Q +    Q+  F        +P+ +  L+    +G+  IDLS A+  + E  ++  G
Sbjct: 114 KPLQEKNSPGQRSFFFGDVKLMKTPFDLNDLNISGFIGDVKIDLSKAIISEGENTIVITG 173

Query: 146 IFGDTDIHLSEDYGVEIEAFVLFGSIEFGSHRDTGMLNRLNWKSANYDSCAQKVKFNISY 205
           + GD DI++  D  V I +    G I+    R +G+ N++  ++ NY+  A++VK +IS 
Sbjct: 174 LIGDVDIYIPSDLEVSISSSAFVGDIDVIGGRKSGIGNQIYSETENYEQSARRVKISISL 233

Query: 206 LMGDLDVR 213
            +GD+DVR
Sbjct: 234 FIGDVDVR 241


>B4AG95.1 B4AG95_BACPU Protein LiaF
          Length = 241

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 59/104 (56%)

Query: 110 PWVMRSLSAWHVLGEADIDLSLAMAEDPETVMLFQGIFGDTDIHLSEDYGVEIEAFVLFG 169
           P+ +  L+    +G+  IDLS A+  + E+ ++  G+ GD DI + +D  V + A    G
Sbjct: 136 PFQLSDLTISGFIGDVKIDLSKAIIAEEESTIVISGLIGDVDIFVPQDIEVCVSASAAIG 195

Query: 170 SIEFGSHRDTGMLNRLNWKSANYDSCAQKVKFNISYLMGDLDVR 213
            ++    + +G  +++   + NYD   +KVK +IS L+GD+DVR
Sbjct: 196 DMKIIDEKRSGFGSKVYVMTDNYDESKRKVKISISLLIGDVDVR 239


>A8FHA2.1 A8FHA2_BACP2 Hypothetical membrane protein
          Length = 241

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 59/104 (56%)

Query: 110 PWVMRSLSAWHVLGEADIDLSLAMAEDPETVMLFQGIFGDTDIHLSEDYGVEIEAFVLFG 169
           P+ +  L+    +G+  IDLS A+  + E+ ++  G+ GD DI + +D  V + A    G
Sbjct: 136 PFQLSDLTISGFIGDVKIDLSKAIIAEEESTIVISGLIGDVDIFVPQDIEVCVSASAAIG 195

Query: 170 SIEFGSHRDTGMLNRLNWKSANYDSCAQKVKFNISYLMGDLDVR 213
            ++    + +G  +++   + NYD   +KVK +IS L+GD+DVR
Sbjct: 196 DMKIIDEKRSGFGSKVYVMTDNYDESKRKVKISISLLIGDVDVR 239


>C0Z626.1 C0Z626_BREBN Conserved hypothetical membrane protein
          Length = 288

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query: 116 LSAWHVLGEADIDLSLAMAEDPETVMLFQGIFGDTDIHLSEDYGVEIEAFVLFGSIEFGS 175
           L  WH +G+  IDLS A+    E  ++ +G  GD  I++  D  V + A +  G +E  S
Sbjct: 189 LHVWHGIGDVVIDLSRAVLMRDEAFLVVEGWVGDVTIYVPIDLPVSVTAGLSIGDLEVLS 248

Query: 176 HRDTGMLNRLNWKSANYDSCAQKVKFNISYLMGDLDVR 213
           HR  G+   +  +S  YD   QKV  +IS L+GD+ V+
Sbjct: 249 HRQGGINRSVKIRSDQYDEALQKVNLHISLLVGDIKVK 286


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,155,873,010
Number of extensions: 42909852
Number of successful extensions: 117058
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 117067
Number of HSP's successfully gapped: 26
Length of query: 215
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 85
Effective length of database: 1,835,964,253
Effective search space: 156056961505
Effective search space used: 156056961505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)